Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01135 ATGTTTTTTGGTTCCTGGAAATCGAGCACAAGAGAGACGTTTGAAGGAGCTTTTGTTTTTTACACAAGAATGGGTGATCACATGGTTTTGTGTGTGGACCGCCTCAGTAAGCCTGAAAGTTTGCAGTCGCTACCGGGAACTACTGCTCCAGGTTCTTCTTTTGAATCTTCATCTTCTCAAAATTCAGAGCCACCTGTTTGTGCTATTTCTGTTGAAGATGTGGATGAACATGATGTATCTGAAGAAGACCCCCTCATTCAGTCAGTTGAATGTCGAATATGTCAGGAAGAGGATAGTATTAAGAATTTGGAGATTCCTTGTGCGTGCAGTGGCAGCTTGAAGTATGCTCACAGGAAATGTGTCCAGCGATGGTGCAATGAGAAGGGAGATATAAATTGTGAAATTTGTCATCAGAATTATCAGCCTGGTTATACCTTGCCCGTACCACCCCCTCGCTCGGAAGATGCTACCATTGATATGAGTGAAGGTTGGCCGGTCTCTGAAACTGCTTTAGATTTGCATGATCCACGACTTTTGGCTATGGCAGCAGCAGAACGCCACTTTCTTGAGGCAGAATACGATGAATATGCAGATGCGAGTGCAAATGGAACAGCGTTTTGCCGATCTGCTGCTCTGATTTTATTGGCTCTTTTACTGTTGAGGCACGCTCTGTACCTTACAAATGGTGATGGAGAAGATGATGCTTACACTTTTTTCTCGCTTTTATTGCTACGAGCTGTCGGATTTCTTCTTCCCTGCTACATTATGGCATGGGCTATCAGCATACTACAGCGTCGAAGACAAAGACAGGAAGCTGCAGCGCTTGCAGCAACTGAAGTTGCATTTATGCTGCAGGCAGCACAAGGTCAGAGCCTCCAGTTTACCATTGCTCCAGGGCCTGTAGTAACGCCTCATCAAGAGCCACTCCAATAA 933 45.23 MFFGSWKSSTRETFEGAFVFYTRMGDHMVLCVDRLSKPESLQSLPGTTAPGSSFESSSSQNSEPPVCAISVEDVDEHDVSEEDPLIQSVECRICQEEDSIKNLEIPCACSGSLKYAHRKCVQRWCNEKGDINCEICHQNYQPGYTLPVPPPRSEDATIDMSEGWPVSETALDLHDPRLLAMAAAERHFLEAEYDEYADASANGTAFCRSAALILLALLLLRHALYLTNGDGEDDAYTFFSLLLLRAVGFLLPCYIMAWAISILQRRRQRQEAAALAATEVAFMLQAAQGQSLQFTIAPGPVVTPHQEPLQ 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8398281 8401641 - CmaCh13G011350.1 Cma13g01135 306962

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01135 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 142 IPR013083 -
Cma13g01135 310 Pfam RING-variant domain 91 136 IPR011016 GO:0008270
Cma13g01135 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 24 297 - -
Cma13g01135 310 SUPERFAMILY RING/U-box 88 141 - -
Cma13g01135 310 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 24 297 IPR033275 -
Cma13g01135 310 CDD RING_CH-C4HC3_MARCH 91 137 - -
Cma13g01135 310 SMART ringv_2 90 137 IPR011016 GO:0008270
Cma13g01135 310 MobiDBLite consensus disorder prediction 42 65 - -
Cma13g01135 310 Pfam Protein of unknown function (DUF3675) 142 260 IPR022143 -
Cma13g01135 310 ProSiteProfiles Zinc finger RING-CH-type profile. 83 143 IPR011016 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01135 - - - csv:101217964 500.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00476 Cma-Chr1:2408638 Cma13g01135 Cma-Chr13:8398281 2.67E-106 dispersed
Cma01g00788 Cma-Chr1:4252161 Cma13g01135 Cma-Chr13:8398281 1.31E-166 dispersed
Cma13g01135 Cma-Chr13:8398281 Cma15g00953 Cma-Chr15:5118284 9.42E-49 dispersed
Cma13g01135 Cma-Chr13:8398281 Cma18g01151 Cma-Chr18:9251784 1.32E-87 wgd
Cma13g01135 Cma-Chr13:8398281 Cma04g01657 Cma-Chr4:8349479 1.06E-95 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g554 Blo04g00770 . . . . . . . Cmo13g01189 . . . . . . Cpe20g00017 . . . . . . . . . . . . . . . Cone2ag0845 Cone16ag0170 . . Lsi02g00075 Csa01g00552 Chy12g01538 Cme12g01990 . . . Bda14g00852 . Bpe15g00601 Bma03g00831 . . . . Cma13g01135 . Car13g00966 . . . Bhi08g01164 Tan05g2438 . Lac10g0079 Hepe07g2507 . . Cla04g01196 Cam04g1255 Cec01g1766 Cco01g1813 Clacu04g1285 Cmu04g1261 Cre01g1554 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000419 4 6 4 4 3 3 6 3 3 3 3 3 6 3 3 6 3 6 6 3 3 3 3 3 3 3 3 12 6 2 122
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01135 Cma_Chr13 FPKM 36.301178 39.683731 17.972246 17.726278 21.728655 19.316921 22.089586 11.377632 12.013845 10.12747