Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01138 ATGTTGGATTGTAAGGATCCTGCTATTAAGCTTTTTGGCCGGAATATCCCTCTTTCCGACGACGTTGAAGCTCCGGCGGTTCATTCCCATGACTTCAGTTCTGAGAAACATGCAGAACCCAGGAAGGACGCAAGCGTAGATGATCTTGAGAAACCTGTTGATGGCTCAGATGATTCAAGAAATCTGGAGTGCGGGCAAGAGGGAAGCGTGAATCCCAAAACGCCGTCTATAGATGAAGAAACTGCGAGACCCATTAATGGAGAACCAGAGAGTGAAAGGCTTAATTCAGAGAGAACCCCAAAGAAACCTGATAAATTGCTTCCATGTCCTCGCTGCAAAAGCATGGACACAAAGTTTTGTTACTACAACAATTACAATGTCAATCAACCTCGCCATTTTTGTAAGGCTTGTCAAAGATACTGGACCGCTGGAGGCATCATGAGGAACGTGCCGGTTGGAGCCGGTCGCCGGAAGAGTAAAAACTCTGCTTCTTATTACCGTCACATCACAATCTCTGAGGCTCTTGAAGCTGCTGAAATTGAGGCTTCAAATGGAACCCACAAACCAAAATTCATTGGTAACTGTGGCAGAGTCCTCAGTTTCAATTTGGATGCACCCAGTTCTATCCCTAAAGGGTGTGATAAAAGCTCGAGTTTGTCCTCTATGGCAGTTCAAACACCATCAGAATTGAAAACCAACGGCTTCCCTTCTCAAATTTCTTGTCTTTCTGGAGTTCCGTGGCCTTTGGTTTGGAATTCAACAGTTTCTCCACCCTTCGGCCCTCCAGGATTTCCCTTTTCTTTTCTTCCAGCAACTACTTGGAGCTGTGGGGTTCCAGGACCATGGAACACCCCGTGGTTTTCACCACAAGATTCCACAGAACAAAAATCTAAAGCTTCTCCAACACTGGGAAAGCATCAAAGAGACAATGAAATGGCGAAAGAAGATGCCATTTCAAGTAAAGAAGAGGGGGTTAAGCAGAGAAATGGATGTGTATTAACCCCAAAGACTTTAAGGATTGATGACCCAAGTGAGGCTGCAAAAAGTTCCATATGGGCAACGCTTGGGATAAAGAATGAATCAATGAGTGGGGGAAGAAATCTGTTCAAACCCTTTCAACCCAAGGGCCACGAGAAGGTTCCTGTTTCTAAAAACGCCTCAGTGTTGCAGGCAAACCCTGCAGCCTTTTCGAGATCTCTCGTCTTTCATGAGAGCTCTTGA 1221 45.45 MLDCKDPAIKLFGRNIPLSDDVEAPAVHSHDFSSEKHAEPRKDASVDDLEKPVDGSDDSRNLECGQEGSVNPKTPSIDEETARPINGEPESERLNSERTPKKPDKLLPCPRCKSMDTKFCYYNNYNVNQPRHFCKACQRYWTAGGIMRNVPVGAGRRKSKNSASYYRHITISEALEAAEIEASNGTHKPKFIGNCGRVLSFNLDAPSSIPKGCDKSSSLSSMAVQTPSELKTNGFPSQISCLSGVPWPLVWNSTVSPPFGPPGFPFSFLPATTWSCGVPGPWNTPWFSPQDSTEQKSKASPTLGKHQRDNEMAKEDAISSKEEGVKQRNGCVLTPKTLRIDDPSEAAKSSIWATLGIKNESMSGGRNLFKPFQPKGHEKVPVSKNASVLQANPAAFSRSLVFHESS 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8406675 8408886 + CmaCh13G011380.1 Cma13g01138 306965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01138 406 MobiDBLite consensus disorder prediction 301 323 - -
Cma13g01138 406 MobiDBLite consensus disorder prediction 24 61 - -
Cma13g01138 406 ProSiteProfiles Zinc finger Dof-type profile. 107 161 IPR003851 GO:0003677|GO:0006355
Cma13g01138 406 MobiDBLite consensus disorder prediction 83 103 - -
Cma13g01138 406 Pfam Dof domain, zinc finger 105 161 IPR003851 GO:0003677|GO:0006355
Cma13g01138 406 PANTHER CYCLIC DOF FACTOR 1 1 405 - -
Cma13g01138 406 MobiDBLite consensus disorder prediction 287 326 - -
Cma13g01138 406 MobiDBLite consensus disorder prediction 14 103 - -
Cma13g01138 406 ProSitePatterns Zinc finger Dof-type signature. 109 145 IPR003851 GO:0003677|GO:0006355
Cma13g01138 406 MobiDBLite consensus disorder prediction 62 76 - -
Cma13g01138 406 PANTHER CYCLIC DOF FACTOR 2 1 405 IPR045174 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00141 Cma13g01138 CCT
Cma10g00196 Cma13g01138 CCT
Cma11g00141 Cma13g01138 ECH
Cma10g00196 Cma13g01138 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01017 Cma-Chr11:5512350 Cma13g01138 Cma-Chr13:8406675 1.40E-87 dispersed
Cma13g01138 Cma-Chr13:8406675 Cma14g00586 Cma-Chr14:2908640 7.90E-66 dispersed
Cma01g00791 Cma-Chr1:4266501 Cma13g01138 Cma-Chr13:8406675 0 wgd
Cma10g00196 Cma-Chr10:882611 Cma13g01138 Cma-Chr13:8406675 9.53E-114 wgd
Cma11g00141 Cma-Chr11:757756 Cma13g01138 Cma-Chr13:8406675 1.33E-106 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36154 PF02701 zf-Dof 5.10E-32 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01138 - - cmos:111431399 802.357