Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01140 ATGCACTTCCCCTCTGCCTTCCCCCATTACCTTCCCTCTCCGCCATTTTCCCTCTCCGCCATCCTCTTTCCGCCATCCTCTTTCCGCCATCCCCTTCCCTTTCTTCTTCATCATATTCTTGTTCTTGTTCTTGTTCTTGTTCTTCTTCATTCACTTCCCCCTTCTCGGGTTAAGCTGAAAATAAAAAAATTGGAGAGCACTGGTAGCAGGCAAGTGACCTTCTCTAAGAGAAAAAATGGGATTATGAAGAAAGCTAAGGAGCTGGCTATACTCTGCGATATTGATATCGTTCTCCTCATGTTTTCGCCAACTGGAAAGCCGACGCTATATCAAGGTGAACGCAGCAGCATCGAGGAGGTCATTACAAAATTTGCTGAATTGACTCCACAGGAGAGGGCAAAAAGGAAACTGGAAAGCCTTGAAGCGCTGAAGAAAACATTCAAGAAGTTAGACCACGATGTAAACATAAAAGATTTTGTGGGTTCAAGCTATTGGAGGAATCCTGATAGTATCAGCAATATACAACAGCTCCAACAGATGGAAGGTTTAATAAGGGAGTCCCTAAACCAGACACGTCTACACAAGGAAAATTTAAGGAGACACCAACTTCTCTCACAGGAATTCACGGGCCAGTATCCGGGTGGTGAGATGTCCTTACCTTTGTTAATGGACGAAATGCAAGGCATTCAACCCCTGTTATGGCTTCCCAACTATGGGACTCAACAGATTACTTTGCCAAATGAGCCTAACTTTCTGCAACCAGGTGATGTTGAATGCTCATTTCCAAGCTATCCCAGTTACTACAACCCTGGGAAGCAAATTGAAGCTGGAGTATCTGGTCAAGTTGATAGCATGCCACAGGGTGATGGGGGTTTAAATGAATTAAGTGGAACTTCTTGCTCAACACTGCAACTTGGTGAGCAATATCAATACCCCCCTACATGTGATGGTTCCAGCTTCCAAGATGAAAAGAGACTGAACCTTGAGATGGAGATGAACTTGCATGGAAATTATGTGGACAACCAACTAAATGGGAAGTTGGACCTCTCAAGATCTCTATATGATGATGAGCAGCATCCTTGGGGTTCTATACCAGGGCCTTGTAGCATTCCAATGTACCAAAGCAGCAATGCCTACCACCACCATATCTCAGGTGGGTTTCTTTCGCTGGTTTTGAGGGGCTTCTTCCTGGTTTTCGTTTTCTTGTTGCGTACTCGATTCTGCTTAAACAGAGATTTAAATTGGTGCCATTCTTTTGTGGGGCTCTTCTATTTTATGCTGACAATCTCTGGACGGCCGTTTGATTTCTCCCGCGCCATGGCTTGTTCGTTGAAGACTGGTCTCTCTGTTTCAGGGCTGAAGGATCGTTCGTGTTACTCTAATTCATCTGGGGTTTCTGGGTTTTCTACTTCTGTTTGTGCTTCCAGTTTAAAAGTGTCAAAGCAGCCGGGGTTTCCTGTTTTGAGCGTCGATTTCTTGGGGAATGCTGTAGTGATTTCGGATCGAAATGGTATTAGAAACTCGAACGCTGAATCCCCAAATAGACTGACCGTTTATGCACAGGCATCGATTTGTGTAAGCCGAGCTCGGAGATGGTGGGAAAAAACCCTGAAACCTAACATGGTTGAGATCCACTCTGCACAAGCCCTTGTGGATGTATTGCTTGATGCTGGCGATAGATTAGCCATTATTGACTTCTATTCCCCTGGCTGTGGAGGTTGCAAAGCCCTTCATCCCAAGATCTGTCAACTGGCTGAATTGAACCCTGATGCAATTTTTCTGAAAGTTAACTTTGAGGAGCTCAAAACCATGTGCCAAGCTCTCCATATTCGTGTTCTTCCTTTCTTTAGATTCTATAGAGGTGGAGAAGGTCGTGTCTGTAGCTTCAGCTGTACAAATGCAACTATTAAGAAATTCAAGGATGCATTGGCTAAACACGGAAGCGACCGGAGTAGCATCCTTCCAGCCAAAGGATTAGACGAATCGGAGCTCGAACGGTTAGCAATGGCAGGTGAATTATCATCATCAAATCTGAAGGAAAGAACATTGGAGGATGTAGTTATGAAAGAAATGGATTGTTATGGTTCTTGGGGAACATCAGGCAATAAAATGGAAGTCATGGAAGAGAACAACCTGATTCTTAAGTGCGTGCCTTGCCCATTCCCCTGCTTTTGCCAAGCTGTGAAGAACTGTAATTGCCCGTCTCTTTCAGTTTTCTAA 2220 44.46 MHFPSAFPHYLPSPPFSLSAILFPPSSFRHPLPFLLHHILVLVLVLVLLHSLPPSRVKLKIKKLESTGSRQVTFSKRKNGIMKKAKELAILCDIDIVLLMFSPTGKPTLYQGERSSIEEVITKFAELTPQERAKRKLESLEALKKTFKKLDHDVNIKDFVGSSYWRNPDSISNIQQLQQMEGLIRESLNQTRLHKENLRRHQLLSQEFTGQYPGGEMSLPLLMDEMQGIQPLLWLPNYGTQQITLPNEPNFLQPGDVECSFPSYPSYYNPGKQIEAGVSGQVDSMPQGDGGLNELSGTSCSTLQLGEQYQYPPTCDGSSFQDEKRLNLEMEMNLHGNYVDNQLNGKLDLSRSLYDDEQHPWGSIPGPCSIPMYQSSNAYHHHISGGFLSLVLRGFFLVFVFLLRTRFCLNRDLNWCHSFVGLFYFMLTISGRPFDFSRAMACSLKTGLSVSGLKDRSCYSNSSGVSGFSTSVCASSLKVSKQPGFPVLSVDFLGNAVVISDRNGIRNSNAESPNRLTVYAQASICVSRARRWWEKTLKPNMVEIHSAQALVDVLLDAGDRLAIIDFYSPGCGGCKALHPKICQLAELNPDAIFLKVNFEELKTMCQALHIRVLPFFRFYRGGEGRVCSFSCTNATIKKFKDALAKHGSDRSSILPAKGLDESELERLAMAGELSSSNLKERTLEDVVMKEMDCYGSWGTSGNKMEVMEENNLILKCVPCPFPCFCQAVKNCNCPSLSVF 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8413237 8420458 + CmaCh13G011400.1 Cma13g01140 306967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01140 739 Coils Coil 130 150 - -
Cma13g01140 739 CDD TRX_family 557 644 - -
Cma13g01140 739 PANTHER THIOREDOXIN, MITOCHONDRIAL 440 707 - -
Cma13g01140 739 SUPERFAMILY SRF-like 56 148 IPR036879 GO:0003677|GO:0046983
Cma13g01140 739 Gene3D Glutaredoxin 531 645 - -
Cma13g01140 739 ProSiteProfiles Thioredoxin domain profile. 532 675 IPR013766 -
Cma13g01140 739 PANTHER THIOREDOXIN-LIKE 1-2, CHLOROPLASTIC 440 707 - -
Cma13g01140 739 PRINTS MADS domain signature 91 112 IPR002100 GO:0003677|GO:0046983
Cma13g01140 739 PRINTS MADS domain signature 56 76 IPR002100 GO:0003677|GO:0046983
Cma13g01140 739 PRINTS MADS domain signature 76 91 IPR002100 GO:0003677|GO:0046983
Cma13g01140 739 Pfam Thioredoxin 556 629 IPR013766 -
Cma13g01140 739 Gene3D - 67 149 IPR036879 GO:0003677|GO:0046983
Cma13g01140 739 SUPERFAMILY Thioredoxin-like 530 647 IPR036249 -
Cma13g01140 739 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 64 108 IPR002100 GO:0003677|GO:0046983
Cma13g01140 739 CDD MADS_SRF_like 56 135 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cma13g01140 739 ProSiteProfiles MADS-box domain profile. 54 114 IPR002100 GO:0003677|GO:0046983
Cma13g01140 739 SMART madsneu2 54 113 IPR002100 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01140 - - - cmax:111495072 657.907
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01140 Cma-Chr13:8413237 Cma18g01139 Cma-Chr18:9209632 2.45E-69 dispersed
Cma01g00794 Cma-Chr1:4288858 Cma13g01140 Cma-Chr13:8413237 1.87E-142 transposed
Cma06g01738 Cma-Chr6:10627661 Cma13g01140 Cma-Chr13:8413237 1.40E-69 transposed
Cma14g01089 Cma-Chr14:7496714 Cma13g01140 Cma-Chr13:8413237 8.56E-63 transposed
Cma01g00792 Cma-Chr1:4274400 Cma13g01140 Cma-Chr13:8413237 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g568 Blo04g00776 Blo16g00183 . . . Bpe13g00297 . . Cmo13g01195 . . . . . . Cpe20g00014 . . . . . . . . . . . . . . . Cone2ag0839 Cone16ag0176 . . Lsi02g00083 Csa01g00562 Chy12g01531 Cme12g01980 . . . . . . . . Sed08g2081 . . Cma13g01140 . Car13g00971 . . . Bhi08g01145 Tan05g2429 . . Hepe07g2500 . . Cla04g01189 Cam04g1246 Cec01g1757 Cco01g1802 Clacu04g1274 Cmu04g1253 Cre01g1546 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023289 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36155 PF00085 Thioredoxin 1.30E-12 CL0172 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01140 Cma_Chr13 FPKM 12.028829 12.80466 4.582819 3.88176 3.227583 2.581677 2.484919 4.968878 4.050914 4.61461