Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01145 ATGATCTTGCCATCTCTTGTTTATCTTCATTTGGTCCATGAATATGATGATGATGACAAGCTTTTTTTCTGTGATCAACACCAATCTCTTCTGCACCAATCCCCTTGGCTTGTTATGAAAACAGACAACTATTTTGTCCCCTCTCTCTTTTTGATCCCATCATTCGAGAAAGAACTTCATGATCTTTTCCCAAATAAATATACAGTTTTCCACTTCTTGGGTCGATATCTGATTCATCCCGTGAATTCAGTTTGGGGACTGATTACGAGATATTATCAGGCTTACTTGGCTAGAGCTAGTGAAAGAATAGGCATTCAGATTAGAGTGTTTGATACAGGAACTGGACCTTTTCAACACATCTTGGATCAGGTTTTGGACTGTACCCTGAAGGAGAATCTGTTGCCACAAACGGAAAGGCGAACAAATGTCGTCGGTCTGGCTGGTAATCAAAAGTCAAAGGCCGTGCTCATAACTTCCTTGAGCGCTGGTTACTTCGAGAAGTTGAAAGATATTTACTGTTCATGGTCGACCTTTGGATATGTGGCTCAAGGTCTTGGCGGTCTGAAACCATGGATATTGTACAATCCCGAGAATCGTACTGCACCGAATCCACCCTGCCGACGAGCCATGTCCATGGAGCCCTGTTTCCATGCACCTCCTTTCTATGACTGCAAGGCTAAGAAGGGAGTGGACACTGGCAAACTTGTTCCTCATGTGAGGCATTGCGAGGACATGGCCTGGGGGCTTAAGTTGGTTGATCAACAGGATTGA 771 44.1 MILPSLVYLHLVHEYDDDDKLFFCDQHQSLLHQSPWLVMKTDNYFVPSLFLIPSFEKELHDLFPNKYTVFHFLGRYLIHPVNSVWGLITRYYQAYLARASERIGIQIRVFDTGTGPFQHILDQVLDCTLKENLLPQTERRTNVVGLAGNQKSKAVLITSLSAGYFEKLKDIYCSWSTFGYVAQGLGGLKPWILYNPENRTAPNPPCRRAMSMEPCFHAPPFYDCKAKKGVDTGKLVPHVRHCEDMAWGLKLVDQQD 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8426670 8430577 - CmaCh13G011450.1 Cma13g01145 306972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01145 256 PANTHER GALACTOSIDE 2-ALPHA-L-FUCOSYLTRANSFERASE 173 256 - -
Cma13g01145 256 PANTHER GALACTOSIDE 2-ALPHA-L-FUCOSYLTRANSFERASE 3 172 - -
Cma13g01145 256 Pfam Xyloglucan fucosyltransferase 173 225 IPR004938 GO:0008107|GO:0016020|GO:0042546
Cma13g01145 256 Pfam Xyloglucan fucosyltransferase 3 172 IPR004938 GO:0008107|GO:0016020|GO:0042546
Cma13g01145 256 PANTHER FUCOSYLTRANSFERASE 2-RELATED 173 256 IPR004938 GO:0008107|GO:0016020|GO:0042546
Cma13g01145 256 PANTHER FUCOSYLTRANSFERASE 2-RELATED 3 172 IPR004938 GO:0008107|GO:0016020|GO:0042546
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01674 Cma-Chr4:8413327 Cma13g01145 Cma-Chr13:8426670 1.87E-112 dispersed
Cma13g01145 Cma-Chr13:8426670 Cma16g00475 Cma-Chr16:2401539 1.73E-84 dispersed
Cma01g00798 Cma-Chr1:4301842 Cma13g01145 Cma-Chr13:8426670 3.13E-158 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01145 K13681 - csv:101219153 466.848