Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01146 ATGGCCGTTGCTTCGTTATGTCAATCCACTATGCAACCCCAGGTGAGTGGCTTTATCGGAGGCCTCACTTTTCAGAAACCAGCTCTTTCTCAACCTACCTCTCTTCCCTTTTCGAGGAGGAGGTTCAGAAATGTGGCAAAAGCTTCAGCTCGGGTTGATAAATACTCAAAATCTGATATAATCGTCTCTCCCTCCATCCTCTCTGCTAACTTTGCAAAATTGGGAGAGCAGGTGAAAGCAGTGGAACTGGCAGGTTGTGATTGGATTCATGTTGACGTAATGGATGGTCGTTTTGTTCCAAATATCACAATTGGACCTCTTGTCGTTGATGCTCTACGCCCTGTGACAGATCTTCCTTTAGATGTGCATTTGATGATTGTGGAGCCCGAGCAGCGTGTGCCAGACTTTATAAAGGCTGGTGCCGATATTGTCAGCGTTCATTGTGAGCAATCTTCCACAATCCATCTGCACCGTACCCTTAATCAAATAAAAAGTCTTGGAGCTAAAGCTGGAGTGGTCCTAAATCCTGCTACTTCACTCACCACAATAGAATATGTCCTTGACGTGGTTGATTTAGTCTTAATTATGTCGGTAAATCCTGGTTTTGGTGGGCAAAGCTTTATTGAGAGCCAAGTGAAGAAAATCTCAGAATTAAGAAGATTATGTGCTGAAAAGGGAGTGAACCCATGGATTGAAGTGGACGGTGGAGTCGGTCCGGGCAATGCATACAAGGTCATTGAGGCTGGAGCCAATGCTTTAGTTGCAGGTTCTGCTGTTTTTGGAGCTAAAGATTATGCTGAGGCTGATAATAGTATTGTTGTGTTATTCATTGCCATAGAGAATTTGCAGCTGAATATATCAGAAGGTTGTGTTCTTCAAGCTCTTATCTCAGACATGGTTGCCATCTCCACAGAAGAAGCCTGTAGATTGCCACTTGAAGATTTGTTATGTACTATAACATCCGAGTACAAATTCCATAATATAAACTTGGGAGAAATATCTATTACGGTTCATGAGCATTTTCGGTCTGAGTCGGGTTTGCAACATGCCAAACCGGCAGTCCTTTTAACGGTTCATGAGACATCCGTAAGCATTGGTATCTCTGAGCAATGCTGTGATCCATGTGTGCAAGTTGTGGTGTTCTGGATGAACCGTATAAAGTGTTTGAAGAAACACTTTTGTCTTGGTCTAGCATTATCACTGGGTTTGCGGAACAGGAAGGGAATCGCGTTTTGTATAGGTCCTGGTTCATCGGTTATGGATTGCAAGGAGCTCAATTTGAACGAAGATTGTGGTGCCTGTGGTAGCGGGGTAAAAAATGGAGGAGATGCGTTTATAGACAGGAGCAAAGTGAGGATTTTGCTGTGCGATAATGATTCAAAAAGTTCAGAAGAGGTTTTCAAGCTTCTTTTGAAATGTTCCTACCAGGTCATTTCCGTGAGCTCAGCTAGACAGGTCATCGATGCTTTGAATGCGGAGGGACCTGAAATTGATATTATACTCTCAGAAGTTGACCTGCCAATGGCCAAAGGTATGAAAATGTTGAAGTATATCACCCGGGATAAAGAGCTCCGGCGCATTCCTGTTATCATGATGTCAACACAAGATGAAGTCCCTATTGTCGTTAAGTGCTTGAGGCTTGGAGCAGCCGACTATCTTGTAAAGCCTTTACGGACAAATGAGCTATTAAACTTGTGGACGCATATGTGGAGAAGAAGACGCATGCTTGGACTGGCAGAAAAAAACATTTTGAACTATGAATTTGATTTGGTGGCATCAGACCCAAGTGATGCCAACACAAATAGTACTACTTTGTTCTCGGATGACACTGATGACAAGTCACGTAGGAGCACAAATCCAGAGATGGGAGTTGCAACACTCCAGGAAGATGAGTCTGGTATTGCTGCCGCACTGGTAGAACCTCCTGCTGTTCATACAGTGGAACATCAGCCAGATGTACCTGGAATTAGCGAGCGCCGAATCGGGCAAACATCCTCATGCCCCAGAAAGAGTGAACTAAAGATTGGGGAATCATCCGCATTCTTTACGTATGTCAAATCAAGAAGTGTGAAGACTAAGGCAGTAGACGTTGAGGACAATGGCAAACGACTTTGGCTGGATGAAAATCATCAAGAAAAAACTGGTCAGCCTGTAGTTCGTCTTCCCCCAATACCAGAAAGTGTGGAGGCCCTGGAAAGCCATTCACAAGGAGACGAAATCCCAAGTAGTACTAGTTTTCCTGATTCTTTTTCTGTGGAGAGATCTTGTACGCCACCTGCTGGCTCAGGAGTTCACAAGGAAAGGAGCTTCAATGAAGAAAATTGCTCTCAAGTGCATGTGCAACCGCCAAATGGATCTCAACTTGATATTTCAGGCCTACCTGTGCAAACACAAACTGCTTATCCTTTCTATACGCCAGAAGGTATGATGTCGGCGCAACTGTACCACAAGAACTTGCACGATATGCATAATCATGCGGCAATGATGTCACAGTACGGTCATTTTCATCATTGCCCTCCCAATGTAAGTGGGGTGGCATCTTATCCTTATTACCCCATGAATATATGTTTACAACCTGGTCAAATGCCCGCTGCTAATAATACTCATTCATGGCCATCTTTTGGAAATGCATTGTCCAATGAAGCGAAATCAAACAAATTTGATAGAAGAGAGGCAGCACTGATTAAATTTAGGCAGAAAAGGAAAGAGCGGTGTTTTGATAAGAAGATTAGGTATGTTAATAGGAAGCGACTTGCAGAAAGGAGGCCCCGTGTGCGGGGTCAGTTTGTGAGAAAGGTAAATGGTGTCAATGTAGATCTTAATGGACAACCTGCATCTGCTGATGATGTCGAGGATGAAGACGAGGAGGAGCAACTATCAAGGGATTTCTCTCATGAGGATGATGGGAAGCAAGCAAGTGCGCATGTTTACTGCATGCACTCATTGTTGGCAGGAGATCCAATTCTGCTGTTACTACATGATCATTTGCTTGCACCAGGTCCTAGTAGCCCTATGTTCCAGAGCACAGCCAGCAACTTGAATTGTAAAGTCCCATATTTGTTTGGGATGCTATTGTTTTACTGGAGGAAATGTGAACCTGCATTTACGAAAATCATATGTATTTACAAATCCAATATACTGGTGCATAAGATAAGCTTCCCAGGAAGTTGGTCTGGTTGGTTGGAGCAATGGCGCAGGAGGAGGAAGAGGGAGTGGAAGCTTCCATCTCAGTGGGATTTAGAGATGATATTTGTTATGAGTAGGTTGTTGTTTCGTTTGATCCAGATGATGGAGACTGAGGCGAGGTGGGTTTGGTTTAGAATGTGCAGCAGAGGCCACTGGAGACCTGCCGAAGACGACAAGCTTCGGGAGCTGGTGGAGCGATACGGGCCTCATAACTGGAACGCCATAGCTCAAAAGCTTCAAGGAAGATCCGGGAAGAGCTGCCGGCTGAGATGGTTCAATCAGTTGGATCCTCGAATCAACAGAAGCCCGTTCACAGAAGAGGAAGAGGAGAGGCTAATGGCGTCCCACAGGGTTCATGGGAACAGATGGGCCATTATTGCAAGGCTGTTTCCTGGCCGCACTGACAACGCCGTCAAGAACCACTGGCATGTCATCATGGCTCGCAAGTCCAGGGACAGCTCCAAAGCCAAAGCCAAAGCCAAAGCCAAAGCCAAAGCCATAACCAAAACCCAAACCCTAAGCCCATCATCTCAAAGTCACCTTCTCTTGTCTTCCTTTCTGCAAACGTCATGTCCACCAAACAACGCTTCCCTCTTTCTCAACCACTCTCTATATCCAAACCCCATTTCTTCATTCATCCCCAAACCAACTGATAGAAGCGTGGAGTTTTACGACTTTCTCCACCTAAACGCTGAGTCCATTAACGCAAGTGAAGTGATAGACAACTCAAGAAAAGAGGATTATGAAGAGGTGAACCAAGAAGCCACTGCCACCGCCGCCCGCCCGCTATTTCCGTTCATTGATTTCTTTTCTGCCCAAACCTCCAACTCCGTCTCATCCTCACATAATTAA 4038 44.95 MAVASLCQSTMQPQVSGFIGGLTFQKPALSQPTSLPFSRRRFRNVAKASARVDKYSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKAGVVLNPATSLTTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISELRRLCAEKGVNPWIEVDGGVGPGNAYKVIEAGANALVAGSAVFGAKDYAEADNSIVVLFIAIENLQLNISEGCVLQALISDMVAISTEEACRLPLEDLLCTITSEYKFHNINLGEISITVHEHFRSESGLQHAKPAVLLTVHETSVSIGISEQCCDPCVQVVVFWMNRIKCLKKHFCLGLALSLGLRNRKGIAFCIGPGSSVMDCKELNLNEDCGACGSGVKNGGDAFIDRSKVRILLCDNDSKSSEEVFKLLLKCSYQVISVSSARQVIDALNAEGPEIDIILSEVDLPMAKGMKMLKYITRDKELRRIPVIMMSTQDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILNYEFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEMGVATLQEDESGIAAALVEPPAVHTVEHQPDVPGISERRIGQTSSCPRKSELKIGESSAFFTYVKSRSVKTKAVDVEDNGKRLWLDENHQEKTGQPVVRLPPIPESVEALESHSQGDEIPSSTSFPDSFSVERSCTPPAGSGVHKERSFNEENCSQVHVQPPNGSQLDISGLPVQTQTAYPFYTPEGMMSAQLYHKNLHDMHNHAAMMSQYGHFHHCPPNVSGVASYPYYPMNICLQPGQMPAANNTHSWPSFGNALSNEAKSNKFDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGQPASADDVEDEDEEEQLSRDFSHEDDGKQASAHVYCMHSLLAGDPILLLLHDHLLAPGPSSPMFQSTASNLNCKVPYLFGMLLFYWRKCEPAFTKIICIYKSNILVHKISFPGSWSGWLEQWRRRRKREWKLPSQWDLEMIFVMSRLLFRLIQMMETEARWVWFRMCSRGHWRPAEDDKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARKSRDSSKAKAKAKAKAKAITKTQTLSPSSQSHLLLSSFLQTSCPPNNASLFLNHSLYPNPISSFIPKPTDRSVEFYDFLHLNAESINASEVIDNSRKEDYEEVNQEATATAARPLFPFIDFFSAQTSNSVSSSHN 1345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8431403 8443034 + CmaCh13G011460.1 Cma13g01146 306973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01146 1345 Gene3D - 1111 1162 - -
Cma13g01146 1345 Pfam Ribulose-phosphate 3 epimerase family 62 260 IPR000056 GO:0005975|GO:0016857
Cma13g01146 1345 ProSiteProfiles Response regulatory domain profile. 452 570 IPR001789 GO:0000160
Cma13g01146 1345 Pfam CCT motif 890 932 IPR010402 GO:0005515
Cma13g01146 1345 SMART sant 1162 1210 IPR001005 -
Cma13g01146 1345 SMART sant 1110 1159 IPR001005 -
Cma13g01146 1345 MobiDBLite consensus disorder prediction 647 669 - -
Cma13g01146 1345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1111 1157 IPR017930 -
Cma13g01146 1345 PANTHER TWO-COMPONENT RESPONSE REGULATOR 423 950 IPR045279 GO:0009736
Cma13g01146 1345 CDD RPE 61 272 IPR000056 GO:0005975|GO:0016857
Cma13g01146 1345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1158 1212 IPR017930 -
Cma13g01146 1345 MobiDBLite consensus disorder prediction 729 791 - -
Cma13g01146 1345 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR1 423 950 - -
Cma13g01146 1345 SUPERFAMILY CheY-like 449 577 IPR011006 -
Cma13g01146 1345 MobiDBLite consensus disorder prediction 940 968 - -
Cma13g01146 1345 MobiDBLite consensus disorder prediction 736 756 - -
Cma13g01146 1345 Hamap Ribulose-phosphate 3-epimerase [rpe]. 59 275 IPR026019 GO:0004750|GO:0006098
Cma13g01146 1345 ProSiteProfiles CCT domain profile. 890 932 IPR010402 GO:0005515
Cma13g01146 1345 MobiDBLite consensus disorder prediction 774 791 - -
Cma13g01146 1345 SMART REC_2 451 566 IPR001789 GO:0000160
Cma13g01146 1345 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 1. 89 103 IPR000056 GO:0005975|GO:0016857
Cma13g01146 1345 CDD SANT 1165 1205 IPR001005 -
Cma13g01146 1345 CDD SANT 1114 1155 IPR001005 -
Cma13g01146 1345 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 193 215 IPR000056 GO:0005975|GO:0016857
Cma13g01146 1345 MobiDBLite consensus disorder prediction 599 619 - -
Cma13g01146 1345 SUPERFAMILY Homeodomain-like 1111 1204 IPR009057 -
Cma13g01146 1345 Pfam Response regulator receiver domain 453 564 IPR001789 GO:0000160
Cma13g01146 1345 ProSiteProfiles Myb-like domain profile. 1111 1157 IPR001005 -
Cma13g01146 1345 Gene3D Aldolase class I 50 273 IPR013785 -
Cma13g01146 1345 Gene3D - 451 659 - -
Cma13g01146 1345 Gene3D - 1164 1235 - -
Cma13g01146 1345 MobiDBLite consensus disorder prediction 946 961 - -
Cma13g01146 1345 ProSiteProfiles Myb-like domain profile. 1158 1208 IPR001005 -
Cma13g01146 1345 Pfam Myb-like DNA-binding domain 1114 1174 - -
Cma13g01146 1345 SUPERFAMILY Ribulose-phoshate binding barrel 55 272 IPR011060 -
Cma13g01146 1345 TIGRFAM rpe: ribulose-phosphate 3-epimerase 62 268 IPR026019 GO:0004750|GO:0006098
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00801 Cma-Chr1:4313087 Cma13g01146 Cma-Chr13:8431403 0 dispersed
Cma02g00633 Cma-Chr2:3824657 Cma13g01146 Cma-Chr13:8431403 9.92E-51 dispersed
Cma04g02415 Cma-Chr4:16673682 Cma13g01146 Cma-Chr13:8431403 6.42E-60 dispersed
Cma04g02963 Cma-Chr4:19469501 Cma13g01146 Cma-Chr13:8431403 9.00E-47 dispersed
Cma09g01074 Cma-Chr9:5652819 Cma13g01146 Cma-Chr13:8431403 2.02E-59 dispersed
Cma13g01146 Cma-Chr13:8431403 Cma18g01143 Cma-Chr18:9224789 5.94E-59 dispersed
Cma14g02156 Cma-Chr14:14772231 Cma13g01146 Cma-Chr13:8431403 3.66E-13 dispersed
Cma15g00082 Cma-Chr15:380686 Cma13g01146 Cma-Chr13:8431403 6.82E-46 dispersed
Cma15g00633 Cma-Chr15:2992749 Cma13g01146 Cma-Chr13:8431403 3.41E-59 dispersed
Cma20g01060 Cma-Chr20:7992156 Cma13g01146 Cma-Chr13:8431403 4.89E-52 dispersed
Cma01g00752 Cma-Chr1:4047368 Cma13g01146 Cma-Chr13:8431403 2.39E-67 transposed
Cma01g00799 Cma-Chr1:4305771 Cma13g01146 Cma-Chr13:8431403 1.04E-152 wgd
Cma11g00131 Cma-Chr11:701417 Cma13g01146 Cma-Chr13:8431403 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36157 PF00834 Ribul_P_3_epim 5.90E-86 CL0036 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01146 K12127 - csv:101220107 974.541