Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma13g01152 | ATGATAGCCAATACGGCCACCTCGGCCTCCCTCTCTCTTCCTTCTTCGGAGCCTTACTCGTGCTTAGAAAATGGAAGCAGCAACAGCAACAGCAACAGCAACAAGAGGAAAAGAAGGCCTGCGGGCACCCCAGATCCTGATGCAGAGGTGGTGTCTCTCTCCCCAAAAACACTTCTAGAATCGGACCGGTACGTGTGCGAGATCTGCAACCAGGGGTTCCAGAGGGACCAGAACCTACAGATGCACAGACGGCGGCATAAGGTGCCTTGGAAGCTGTTGAAGAGGGAGAGTCCTGTTGTGCGGAAAAGGGTTTTCGTTTGCCCGGAGCCCAGCTGTCTGCACCACGACCCTTGCCACGCCCTCGGCGATCTGGTTGGCATCAAGAAGCACTTCCGAAGAAAGCACAGCAACCACAAGCAGTGGGTTTGTGAAAAGTGCTCCAAGGCCTACGCCGTTCAGTCTGATTACAAGGCCCATCTCAAAACCTGTGGCACCCGTGGCCACTCTTGCGATTGCGGCCGCGTTTTCTCTAGGGTGGAGAGCTTTATAGAGCACCAAGATGCTTGCAATATGGGGCATCTCCGGCAAGAATCCCAAACCCTCCACCCCGCGTGTTTGTCCCGAACGGCTTCCAGTCGAAGCCCACCCAGCGACACTAACTTCACGGCGCCACCCACTGCCATCTTCTTAGCCCCCACCGACGATTCCATCAACAACAACAACAATAATAATAATAATAATCATAGCCATCACAATCTAGACCTCAAACTCTCAACTACTTCATCAAATGAAGGTTCTTCCACGCAACTACAGCTTTTGATCGGGTCGTGTGATTTTGGGGACAAGAAGAAAAGGGTGCAGTTGTTGGATAATGAGAAAGGTGGGGGCCGGGGGGCGGGGGGTGTTAGAGAAGAAGCGCGGGAGGAGCTAAGAGTGGCAATGGCGGAGAAGGCGTACGCGGAGGAGGCTAGGCAACAGGTGAAGCGGCAGATAGAAATGGCAGAGGAAGAATTCGTGAACGCAAAGAGGATGAGGCAACAGGCACAGGTGGAGTTAGATAAGGCTACAGCTCTTAAACAAGCGGCAATAAAACAGATAAACTCAACCCTTCTTGAGATCACTTGTCAAGCATGCCAGAAGCAATTTCAAGCCAAGCCCACAACTACTACTACTACTGCACCCGCTGACCATGACACTTCCGTAGCATTCAGTTACGTATCCTCAGTCATTACAACCGAAGGTGAAGTAGAGAAAGATCAAGCAACCCTTATACCTAATTAA | 1281 | 51.68 | MIANTATSASLSLPSSEPYSCLENGSSNSNSNSNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRESPVVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKAYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGHLRQESQTLHPACLSRTASSRSPPSDTNFTAPPTAIFLAPTDDSINNNNNNNNNNHSHHNLDLKLSTTSSNEGSSTQLQLLIGSCDFGDKKKRVQLLDNEKGGGRGAGGVREEAREELRVAMAEKAYAEEARQQVKRQIEMAEEEFVNAKRMRQQAQVELDKATALKQAAIKQINSTLLEITCQACQKQFQAKPTTTTTTAPADHDTSVAFSYVSSVITTEGEVEKDQATLIPN | 426 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 8463470 | 8465560 | + | CmaCh13G011520.1 | Cma13g01152 | 306979 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma13g01152 | 426 | MobiDBLite | consensus disorder prediction | 206 | 262 | - | - | |
Cma13g01152 | 426 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 64 | 86 | IPR013087 | - | |
Cma13g01152 | 426 | Coils | Coil | 303 | 365 | - | - | |
Cma13g01152 | 426 | Gene3D | Classic Zinc Finger | 119 | 190 | - | - | |
Cma13g01152 | 426 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Cma13g01152 | 426 | SUPERFAMILY | beta-beta-alpha zinc fingers | 63 | 161 | IPR036236 | - | |
Cma13g01152 | 426 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 66 | 86 | IPR013087 | - | |
Cma13g01152 | 426 | SMART | c2h2final6 | 105 | 135 | IPR013087 | - | |
Cma13g01152 | 426 | SMART | c2h2final6 | 64 | 86 | IPR013087 | - | |
Cma13g01152 | 426 | SMART | c2h2final6 | 141 | 168 | IPR013087 | - | |
Cma13g01152 | 426 | Gene3D | Classic Zinc Finger | 41 | 104 | - | - | |
Cma13g01152 | 426 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Cma13g01152 | 426 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 16-LIKE | 13 | 417 | - | - | |
Cma13g01152 | 426 | Pfam | Zinc finger, C2H2 type | 64 | 86 | IPR013087 | - | |
Cma13g01152 | 426 | PANTHER | OS03G0310200 PROTEIN | 13 | 417 | IPR039288 | GO:0009630 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00749 | Cma-Chr1:4020016 | Cma13g01152 | Cma-Chr13:8463470 | 0 | dispersed | |
Cma04g02152 | Cma-Chr4:15062482 | Cma13g01152 | Cma-Chr13:8463470 | 4.47E-141 | dispersed | |
Cma13g01152 | Cma-Chr13:8463470 | Cma18g00089 | Cma-Chr18:406361 | 8.10E-161 | dispersed | |
Cma13g01152 | Cma-Chr13:8463470 | Cma13g00972 | Cma-Chr13:7575429 | 1.88E-167 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36158 | PF00096 | zf-C2H2 | 0.004 | CL0361 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma13g01152 | K25871 | - | csv:101209426 | 627.091 |