Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01152 ATGATAGCCAATACGGCCACCTCGGCCTCCCTCTCTCTTCCTTCTTCGGAGCCTTACTCGTGCTTAGAAAATGGAAGCAGCAACAGCAACAGCAACAGCAACAAGAGGAAAAGAAGGCCTGCGGGCACCCCAGATCCTGATGCAGAGGTGGTGTCTCTCTCCCCAAAAACACTTCTAGAATCGGACCGGTACGTGTGCGAGATCTGCAACCAGGGGTTCCAGAGGGACCAGAACCTACAGATGCACAGACGGCGGCATAAGGTGCCTTGGAAGCTGTTGAAGAGGGAGAGTCCTGTTGTGCGGAAAAGGGTTTTCGTTTGCCCGGAGCCCAGCTGTCTGCACCACGACCCTTGCCACGCCCTCGGCGATCTGGTTGGCATCAAGAAGCACTTCCGAAGAAAGCACAGCAACCACAAGCAGTGGGTTTGTGAAAAGTGCTCCAAGGCCTACGCCGTTCAGTCTGATTACAAGGCCCATCTCAAAACCTGTGGCACCCGTGGCCACTCTTGCGATTGCGGCCGCGTTTTCTCTAGGGTGGAGAGCTTTATAGAGCACCAAGATGCTTGCAATATGGGGCATCTCCGGCAAGAATCCCAAACCCTCCACCCCGCGTGTTTGTCCCGAACGGCTTCCAGTCGAAGCCCACCCAGCGACACTAACTTCACGGCGCCACCCACTGCCATCTTCTTAGCCCCCACCGACGATTCCATCAACAACAACAACAATAATAATAATAATAATCATAGCCATCACAATCTAGACCTCAAACTCTCAACTACTTCATCAAATGAAGGTTCTTCCACGCAACTACAGCTTTTGATCGGGTCGTGTGATTTTGGGGACAAGAAGAAAAGGGTGCAGTTGTTGGATAATGAGAAAGGTGGGGGCCGGGGGGCGGGGGGTGTTAGAGAAGAAGCGCGGGAGGAGCTAAGAGTGGCAATGGCGGAGAAGGCGTACGCGGAGGAGGCTAGGCAACAGGTGAAGCGGCAGATAGAAATGGCAGAGGAAGAATTCGTGAACGCAAAGAGGATGAGGCAACAGGCACAGGTGGAGTTAGATAAGGCTACAGCTCTTAAACAAGCGGCAATAAAACAGATAAACTCAACCCTTCTTGAGATCACTTGTCAAGCATGCCAGAAGCAATTTCAAGCCAAGCCCACAACTACTACTACTACTGCACCCGCTGACCATGACACTTCCGTAGCATTCAGTTACGTATCCTCAGTCATTACAACCGAAGGTGAAGTAGAGAAAGATCAAGCAACCCTTATACCTAATTAA 1281 51.68 MIANTATSASLSLPSSEPYSCLENGSSNSNSNSNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRESPVVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKAYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGHLRQESQTLHPACLSRTASSRSPPSDTNFTAPPTAIFLAPTDDSINNNNNNNNNNHSHHNLDLKLSTTSSNEGSSTQLQLLIGSCDFGDKKKRVQLLDNEKGGGRGAGGVREEAREELRVAMAEKAYAEEARQQVKRQIEMAEEEFVNAKRMRQQAQVELDKATALKQAAIKQINSTLLEITCQACQKQFQAKPTTTTTTAPADHDTSVAFSYVSSVITTEGEVEKDQATLIPN 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8463470 8465560 + CmaCh13G011520.1 Cma13g01152 306979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01152 426 MobiDBLite consensus disorder prediction 206 262 - -
Cma13g01152 426 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Cma13g01152 426 Coils Coil 303 365 - -
Cma13g01152 426 Gene3D Classic Zinc Finger 119 190 - -
Cma13g01152 426 MobiDBLite consensus disorder prediction 1 37 - -
Cma13g01152 426 SUPERFAMILY beta-beta-alpha zinc fingers 63 161 IPR036236 -
Cma13g01152 426 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Cma13g01152 426 SMART c2h2final6 105 135 IPR013087 -
Cma13g01152 426 SMART c2h2final6 64 86 IPR013087 -
Cma13g01152 426 SMART c2h2final6 141 168 IPR013087 -
Cma13g01152 426 Gene3D Classic Zinc Finger 41 104 - -
Cma13g01152 426 MobiDBLite consensus disorder prediction 1 51 - -
Cma13g01152 426 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 13 417 - -
Cma13g01152 426 Pfam Zinc finger, C2H2 type 64 86 IPR013087 -
Cma13g01152 426 PANTHER OS03G0310200 PROTEIN 13 417 IPR039288 GO:0009630
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00749 Cma-Chr1:4020016 Cma13g01152 Cma-Chr13:8463470 0 dispersed
Cma04g02152 Cma-Chr4:15062482 Cma13g01152 Cma-Chr13:8463470 4.47E-141 dispersed
Cma13g01152 Cma-Chr13:8463470 Cma18g00089 Cma-Chr18:406361 8.10E-161 dispersed
Cma13g01152 Cma-Chr13:8463470 Cma13g00972 Cma-Chr13:7575429 1.88E-167 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36158 PF00096 zf-C2H2 0.004 CL0361 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01152 K25871 - csv:101209426 627.091