Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00001 ATGTCACCTGTGCAAACGCTGCTACTTTTGGCTTTCTTCTGCGCTGGAATCCACACAACCAGTTCTTTAACTGATCCCACAGATCTTGCGGCTCTGGAAGCCCTGAGAAGCGATTGGGAAAATACACCGCCAAGCTGGGGAGCATCAAATGATCCGTGTGGAACTCCTTGGGAAGGAGTGAGTTGCACCAATTCAAGAGTAACTGCACTGAGATTATCAACTATGGGCCTAAAAGGTAAACTTGGTGGTGACATTGGAATGCTGACTGGACTAAAATCATTGGACCTTTCGTTCAATGTAAATCTTACTGGTACAATCTCTCCAAGATTAGGGGATCTGCAGAATTTGAGTATCTTGATCCTGGCTGGGTGTGGGTTCAGTGGCAATATTCCTGAAGCACTGGGCAATCTTTCGGAGCTTTCCTTCTTGGCTTTAAATTCTAACAAATTCACTGGTACCATACCGCCGTCTCTGGGAAAACTCTCCAAACTCTATTGGCTGGACCTGGCTGAGAATCAATTGACAGGTAGCATCCCAGTCTCCACTTCCACATCTCCTGGTTTGGACCTCCTTCTGAATGCTAAACACTTTCATTTCAACAAAAACCAGTTATCAGGTTCCATTTCACCTCAACTTTTTAGCTCTGAAATGGTATTAATACACATATTATTTGATGGAAATCAATTTTCTGGGAGAATACCACAAACATTGGGACTTGTTCAGACCCTTGAGGTTCTGCGACTCGACCGGAATTCTCTAACAGGACCAGTCCCATCAAATCTGAACAACCTAACAAATATCAATGAATTGAATTTAGCCGGCAATAAGTTGACGGGTCCACTGCCAAACCTAACTCAAATGAGCTCACTAAATTACGTGGACCTTAGTAACAACTCATTTGATTCATCGCCAGCTCCAGAATGGTTCTCAAGTCTACAATTTCTCACCACTCTGATCGTGGAGTACGGGTCAATACGAGGATCTGTGCCACAAGGAGTGTTTAGTTTACCACAGATACAACAAATAAAACTGAAGAACAATGAATTCAATGACACATTAGATATGGGTGACAAAGTGAGCGAACAGTTGCAGCTCGTTGATTTGGAAAATAACAATATTTCCCATCTTACCCTCGGTTCAAGATATACCAAAACTTTGATGCTGATAGGGAATCCTGTGTGTAGCACTGATGCTACCCTTCCAAACACGAACTACTGCCAGCGTCAAAACCAACCGGTGACATCCTATTCTACCAGCCTTGCCAGCTGTGGAAGTAAGTCATGTTCTTCTGATCAGAAGCTAAGCCCTCAGAGTTGTGAATGTGCCTATCCATTTGAAGGGACTTTATACTTTAGAGCACCCTCGTTCAGGGCATTGTCCAATGTGACTTTGTTTCATTCATTGGAAATGAGCCTTTGGAAAAAACTGGACCTTACGCCTGGTTCAGTTTTTATTCAAAACCCTTTTTTCAATGTTGACGATTATCTTCAGCTGCAGCTTGCACTTTTTCCACCTGAGGAAAAGTATTTTAGTAGGTCAGATATTCAGAGGATTGGGTTTGACCTGAGTAATCAAACCTACAAGCCTCCCAAAGAATTTGGGCCATTTTATTTCATTGCATCTCCCTACGATTTTGAAGTCACGGCTAGGGAAACTTCAGTCAGCCCGGGAGTGATAATTGGGGTAGCTATTGGTTGTACCTTTCTCGTTCTAGGTCTGATTGGGGTTGGAATATATGCAATTTGGCAAAAGAAACGTGCAGAAAGGGCCATTGGATTGAGTCGGCCATTTGCTTCTTGGGCACCAAGTGGAAACGATAGTGGAGGTGCACCACAGCTGAAGGGAGCCAGATGGTTTTCTTATGATGAACTTAAAAAATGCACAAATAATTTCTCCATGAGCAATGAGATAGGATCTGGAGGATATGGCAAGGTATACAGAGGAATGCTTGTGGATGGACAAGTAGTTGCGGTCAAAAGAGCTCAGCAAGGGTCAATGCAAGGTGGCCTTGAGTTCAAGACAGAAATCGAACTGCTTTCACGAGTTCATCACAAGAACCTTCTTGGCCTCGTGGGATTTTGTTTTGAACAAGGAGAACAGATGCTTGTTTATGAATTTATGCCTAATGGAACACTGAGAGATAGCCTATCTGGAAAATCTGGCATCAATCTTGATTGGAAGAGAAGACTTCGTATTGCACTTGGGTCTGCTAGAGGACTGACTTATTTACATGAACTTGCTAATCCTCCCATAATCCATAGAGACATTAAGTCCACCAATATTCTATTGGATGAGCATTTGAATGCAAAAGTTGCAGATTTTGGCTTGTCCAAGCTTGTCTCAGACAGTGAAAAGGGACACGTTTCCACTCAAGTTAAAGGAACGTTGGGTTACTTGGATCCTGAATATTACATGACTCAACAATTAACTGAGAAAAGTGATGTATATAGCTTTGGAGTGGTTATGTTGGAATTGTTAACTGCTAAGCTGCCCATCGAGAAAGGAAAGTACGTAGTTCGTGAGGTGCGTATGTTAATGAATAAAAATGAAGAAGAACATTATGGTCTGAAGCCGATAATGGATGCAACCATGATAAACAGTGCAACCACTATTATTGGGCTTGGAAGGTTCTTGGAGTTGGCCATGCAATGCGTTGAAGAATCAGCTACAGAGCGTCCCACAATGTGCGAAGTGGTGAAGGCGATTGAAAGTATTTTGCAGAACGATGGAATTAATACTAACACAACATCTGCATCTTCATCTGCAACCGACTTTGGGGCTTCCAGAACCGCTCCTAGGCATCCCTACAATGATCCTATACCAAAAAAGGACGCTAATGACAGCAGTGCTTTTGATTACAGCGGTGGATACACTCTTTCTACTAAAGTGGAACCCAAATAG 2901 42.71 MSPVQTLLLLAFFCAGIHTTSSLTDPTDLAALEALRSDWENTPPSWGASNDPCGTPWEGVSCTNSRVTALRLSTMGLKGKLGGDIGMLTGLKSLDLSFNVNLTGTISPRLGDLQNLSILILAGCGFSGNIPEALGNLSELSFLALNSNKFTGTIPPSLGKLSKLYWLDLAENQLTGSIPVSTSTSPGLDLLLNAKHFHFNKNQLSGSISPQLFSSEMVLIHILFDGNQFSGRIPQTLGLVQTLEVLRLDRNSLTGPVPSNLNNLTNINELNLAGNKLTGPLPNLTQMSSLNYVDLSNNSFDSSPAPEWFSSLQFLTTLIVEYGSIRGSVPQGVFSLPQIQQIKLKNNEFNDTLDMGDKVSEQLQLVDLENNNISHLTLGSRYTKTLMLIGNPVCSTDATLPNTNYCQRQNQPVTSYSTSLASCGSKSCSSDQKLSPQSCECAYPFEGTLYFRAPSFRALSNVTLFHSLEMSLWKKLDLTPGSVFIQNPFFNVDDYLQLQLALFPPEEKYFSRSDIQRIGFDLSNQTYKPPKEFGPFYFIASPYDFEVTARETSVSPGVIIGVAIGCTFLVLGLIGVGIYAIWQKKRAERAIGLSRPFASWAPSGNDSGGAPQLKGARWFSYDELKKCTNNFSMSNEIGSGGYGKVYRGMLVDGQVVAVKRAQQGSMQGGLEFKTEIELLSRVHHKNLLGLVGFCFEQGEQMLVYEFMPNGTLRDSLSGKSGINLDWKRRLRIALGSARGLTYLHELANPPIIHRDIKSTNILLDEHLNAKVADFGLSKLVSDSEKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSFGVVMLELLTAKLPIEKGKYVVREVRMLMNKNEEEHYGLKPIMDATMINSATTIIGLGRFLELAMQCVEESATERPTMCEVVKAIESILQNDGINTNTTSASSSATDFGASRTAPRHPYNDPIPKKDANDSSAFDYSGGYTLSTKVEPK 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 353 6934 - CmaCh14G000010.1 Cma14g00001 306984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00001 966 ProSiteProfiles Protein kinase domain profile. 631 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma14g00001 966 Gene3D Ribonuclease Inhibitor 25 182 IPR032675 -
Cma14g00001 966 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 938 - -
Cma14g00001 966 SMART serkin_6 631 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma14g00001 966 ProSitePatterns Protein kinases ATP-binding region signature. 637 659 IPR017441 GO:0005524
Cma14g00001 966 MobiDBLite consensus disorder prediction 911 966 - -
Cma14g00001 966 ProSitePatterns Serine/Threonine protein kinases active-site signature. 751 763 IPR008271 GO:0004672|GO:0006468
Cma14g00001 966 Gene3D Transferase(Phosphotransferase) domain 1 707 929 - -
Cma14g00001 966 Gene3D Ribonuclease Inhibitor 284 432 IPR032675 -
Cma14g00001 966 Pfam Protein tyrosine and serine/threonine kinase 633 901 IPR001245 GO:0004672|GO:0006468
Cma14g00001 966 CDD STKc_IRAK 637 905 - -
Cma14g00001 966 Gene3D Phosphorylase Kinase; domain 1 605 706 - -
Cma14g00001 966 PANTHER LRR RECEPTOR-LIKE KINASE 1 938 - -
Cma14g00001 966 SUPERFAMILY Protein kinase-like (PK-like) 616 916 IPR011009 -
Cma14g00001 966 MobiDBLite consensus disorder prediction 911 927 - -
Cma14g00001 966 Gene3D Ribonuclease Inhibitor 183 283 IPR032675 -
Cma14g00001 966 SUPERFAMILY L domain-like 52 414 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00009 Cma-Chr13:181558 Cma14g00001 Cma-Chr14:353 2.23E-160 dispersed
Cma14g00001 Cma-Chr14:353 Cma17g00118 Cma-Chr17:586539 7.29E-23 dispersed
Cma14g01087 Cma-Chr14:7404971 Cma14g00001 Cma-Chr14:353 0 transposed
Cma20g01007 Cma-Chr20:6446245 Cma14g00001 Cma-Chr14:353 0 transposed
Cma14g00001 Cma-Chr14:353 Cma03g00280 Cma-Chr3:3750096 8.76E-163 wgd
Cma14g00001 Cma-Chr14:353 Cma06g00176 Cma-Chr6:881424 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69038 PF07714 PK_Tyr_Ser-Thr 5.20E-47 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00001 - - csv:101220026 1701.41