Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00032 ATGAATAACATAAACCAATCGATAAATACAGTGGCCGGCGGATCTTGTGAGAAGAGAACCAATGGTTTGGGTATGGAAGCTCCGAAATTCAAGTCTCTTCAGCCGCCTCCATTCCCCATGTCTCCTTCTTCTTACCTTTCCGCTTTCTCTTCTGGTTTAAGCCCCACTGAGCTTCTCAATTCCCCTCTCTTCTCCTTTGGTCTTTTTCCTTCTCCTACTACTGGTTCCTTCAACTTGAGAAATGATTACGATGATGCCGACCACCACGAAATGAAGGCAGATGCCAAAAATTACTCCTATTCTTCGTTTAACCCTCAAACAAGATCCTCTGTTTCGTCTTATTTTCAGTCCTCTTCTTCCAACGTGACTCTACCGAATCCAGGCGGTTTGTCGTGTGATGAAAGTGGAGCGAAATCTGAAGTCGTTGCCACAGATATGGCGGCAGCTCAATCAAACCCAGTTTCTCAGCTACCTGTTTATAACAGAGAACAGAAAAAATCGGAGAACGATGGATATAACTGGAGAAAATATGGGCAAAAACAAGTGAAAGGAAGCGAAAATCCACGAAGTTATTACAAGTGCACTTTTCCCAATTGCCCAACAAAGAAGAAAGTTGAAAGATCTTTAGATGGCCAAATCACTGAGATTGTTTACAAGGGAAGCCATAATCACGCCAAGCCCCAGCCCACAAGACGTTCCGGTAACTCCGCCGTTTACGACCCATCGGCGGCGGAATCCACCTTGCTGCTGGAGGATTCCTCCGTCTCAGTGGGGGACGATGAAGTCGAACCCAATTCGCCGTTTAGCAACTCGGTGGACGACAATGAAAATGAACCGGAATCTAAAAGATGGAAAGGGGAAAATGAAAATGAGGGATTTTCTGGGGGTGGAAGCAGAACAGTGAAAGAGCCAAGAATTGTGGTTCAAACAACGAGCGAAATTGACATACTGCCTGATGGCTATAGATGGAGGAAATACGGACAAAAAGTGGTCAAAGGAAATCCAAATCCGAGGAGCTACTACAAGTGCACATCTTTAGGGTGCCCTGTAAGGAAACACATAGAGCGGGCGGCCAACGACACGAGGGCCGTGATCACTACCTACGAAGGCAAACACAACCACGAAGTCCCTGCAGCACGCGGCGGCGGTGGAAGCTTCTATAACGCGGTCAATCGACCTGTACCTGCCAGCATTCCAATGCCAGTGAGGCCATCCGCTGCCGTCAGCCATTCCTTCCCGACAAATTTTCCGGCCTCCTTCCTGGCTGGAAATATAAACATGTCAGAAATAGGAGCACGAGCAGCACCATCATCATTCCCGTTTCAGACATCACAAGGAGTGCCCCCAAGTTTTCAAGTTTCAGGATTTGGAACAGCCGCCAAGGAAGAGGCCGAAGACAACATGTTCTTCAACTCATTTCTATCTTAG 1428 47.27 MNNINQSINTVAGGSCEKRTNGLGMEAPKFKSLQPPPFPMSPSSYLSAFSSGLSPTELLNSPLFSFGLFPSPTTGSFNLRNDYDDADHHEMKADAKNYSYSSFNPQTRSSVSSYFQSSSSNVTLPNPGGLSCDESGAKSEVVATDMAAAQSNPVSQLPVYNREQKKSENDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEIVYKGSHNHAKPQPTRRSGNSAVYDPSAAESTLLLEDSSVSVGDDEVEPNSPFSNSVDDNENEPESKRWKGENENEGFSGGGSRTVKEPRIVVQTTSEIDILPDGYRWRKYGQKVVKGNPNPRSYYKCTSLGCPVRKHIERAANDTRAVITTYEGKHNHEVPAARGGGGSFYNAVNRPVPASIPMPVRPSAAVSHSFPTNFPASFLAGNINMSEIGARAAPSSFPFQTSQGVPPSFQVSGFGTAAKEEAEDNMFFNSFLS 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 149735 152271 - CmaCh14G000320.1 Cma14g00032 307015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00032 475 SUPERFAMILY WRKY DNA-binding domain 165 227 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma14g00032 475 ProSiteProfiles WRKY domain profile. 163 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma14g00032 475 MobiDBLite consensus disorder prediction 1 16 - -
Cma14g00032 475 MobiDBLite consensus disorder prediction 275 289 - -
Cma14g00032 475 MobiDBLite consensus disorder prediction 217 240 - -
Cma14g00032 475 SUPERFAMILY WRKY DNA-binding domain 309 377 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma14g00032 475 Gene3D WRKY domain 154 228 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma14g00032 475 Gene3D WRKY domain 302 378 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma14g00032 475 MobiDBLite consensus disorder prediction 160 189 - -
Cma14g00032 475 Pfam WRKY DNA -binding domain 169 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma14g00032 475 Pfam WRKY DNA -binding domain 319 375 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma14g00032 475 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 20 453 IPR044810 GO:0003700
Cma14g00032 475 MobiDBLite consensus disorder prediction 254 299 - -
Cma14g00032 475 MobiDBLite consensus disorder prediction 254 274 - -
Cma14g00032 475 ProSiteProfiles WRKY domain profile. 312 377 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma14g00032 475 SMART WRKY_cls 317 376 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma14g00032 475 SMART WRKY_cls 168 226 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma14g00032 475 MobiDBLite consensus disorder prediction 1 34 - -
Cma14g00032 475 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 20 453 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00709 Cma-Chr2:4293272 Cma14g00032 Cma-Chr14:149735 3.40E-94 dispersed
Cma10g00467 Cma-Chr10:2113706 Cma14g00032 Cma-Chr14:149735 2.66E-15 dispersed
Cma11g00458 Cma-Chr11:2235976 Cma14g00032 Cma-Chr14:149735 1.30E-16 dispersed
Cma13g00029 Cma-Chr13:373134 Cma14g00032 Cma-Chr14:149735 2.23E-111 dispersed
Cma14g00032 Cma-Chr14:149735 Cma15g00248 Cma-Chr15:1187701 1.11E-79 dispersed
Cma14g00032 Cma-Chr14:149735 Cma01g00711 Cma-Chr1:3726739 3.27E-116 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36160 PF03106 WRKY 7.80E-25 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00032 K13424 - csv:101205651 730.709