Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00042 ATGGGAAAAACCCACAACCCTCTGAGTGAGTTTCAGGTAAACCCACTTCAGTTCATGCAGTTTCCCGTAGCAATAACAGCTGATTGGGGCTCTAAATCACCTAATAAGAGCAGAAAGTGGAAGGGCCAACAATGGAGAAGCTGTTCTTCATACCTGACTGCTCTCTTTTTTGCTCATCTTTTGGCTTTTTCCCTTCAACCGGTCACTGGCCAGATGTGGGACGGAGTGGCTGTTACACAAGGAGATTTTCAAGCTCTTCAAGCTATAAAACACGAACTCATCGACCTTAAAGGAGCTTTGCGTAGCTGGAATGGCAGTACTGGAGCTTGTTCCGGGCAGTGGGCAGGAATCAAGTGTGTGAAGGGGCAGGTCATTGCTATACAGCTTCCATGGAAGGCTCTTGCCGGCCGGATTTCCGACAGGATTGGGCAGCTCCGGGAACTTAGAAAGCTCAGCCTCCACGATAATGTGATCTCCGGCACAGTCCCTCGGTCGCTCGGCCTCCTTCCAAATCTCAGAGGAATTTATCTTTTCAACAACAGATTCTCAGGTTCTATTCCTCCTACAATTGGTAATCTTCCCCTTCTTCAAACTCTTGATTTGAGCAACAATTTGCTCACAGGAGAAATTCCTTCTGGTCTAGCAAATTCTACCAAATTGATTAGAGTTAATCTGAGTTACAATTCATTGTCGGGATCTATCCCAAGTAGCTTTACGCAGTCGTTTTCTCTTACAATTCTCGCCCTTCAGCACAATAATATTTCTGGGACCGTCCCAGATTCTTGGGGTGGTCGAACTTGCCCACTTGCTGTTATAACGCTTGATCATAATGTAATATCTGGGGCAATTCCAGCTTCCTTGAGTAAACTGGAATGGCTTCAAGAGATTTCCATCAGTGAAAACAAGATCTCTGGGGCTATACCGGGTGGAATAGGCAAGCTGAAGAGACTTCGCCTTTTGGATCTGTCGAACAACGCCATTAATGGTGGCTTCCCTTCAAGTTTCTCTAATCTATCCTCTCTTGAATTATTGAATGTTGAAAATAATCGCCTCGAAAGCCAGATTCCAGGAGATATTGATAGATTGCAGAATCTCTCAGTGGTCAAGCTTGGGAAGAATCGATTTAGTGGTGAGATTCCTGCAAGTTTGGGGAACATTTCTGCTATTACCCAACTTGATTTCTCTGAAAATAACTTCACGGGACAGATACCAACATCGCTGACCAGTTTGTTGAATCTGACCTCTTTCAACGTCTCTTACAACAATCTCTCTGGCCCTGTCCCGGTTCTCCTATCAAATAAGTTCAATGCGAGCTCTTTTGTAGGGAACCTTCAACTGTGTGGTTTTAGTGCTTCAACTCCATGTCAACCTGCATCCTCTCCACAGAATATTACAACTCCATCATCTGAGGTCCGGAAACCGCATCGCCGCCGCAAACTCAGTGTGAAGGACATAATTCTGATAGCCGCTGGAGCTCTGTTGGTGCTTCTTCTTCTTCTCTGCTCAATTTTGCTCTGTTGTTTGTTATCAAAAAGAGCTGCTGCTAGAAAGAATGACAAAACGGCTGGCAAGCAAGCGACAGCGAGAAGCATCGAGAAGGAAGCACCAGGCAGCACCGAAGTGGGGACGGGCGAAGCCGGAGGAAAACTAGTTCATTTTGATGGGCCATTTGTTTTCACTGCTGATGATCTTCTGTGTGCGACTGCGGAGATCATGGGAAAGAGTACATATGGAACAGCATATAAAGCAACATTAGAAGATGGTAATGAAGTTGCAGTGAAAAGATTGAGGGAAAAAACAACAAAAGGGCAGAAGGAATTTGAAACTGAAGTTGTGGCACTAGGAAAAATTAGACACCCAAATCTACTTGCTCTTAGAGCTTACTACATAGGCCCCAAAGGAGAGAAGCTTCTTGTCTTTGATTACATGCCTCGAGGAAGTCTATCTTCCTTCCTTCATGCTCGCGGGCCGGAAACCACGGTCGATTGGCCAATGAGGATGAAAATAGCGATCGGAATCACGCAAGGCTTGAACTACCTCCACACAGAGGAGAATCTAATTCATGGGTACCTCACGTCCAGCAACATTCTGCTGGATGATCAGACCAATGCTCGCATTGCAGATTTTGGGCTTCCTAAGCTCATGACTTCAGCTGCAGCCACAAATGTGATTGCCACTGCAGGAACACAGGGCTACAATGCACCAGAGCTAACAAAAACCAAAAAAACCACAACAAAGACAGATGTCTACAGCCTTGGAGTCATAATATTGGAACTTTTGACAGGAAAATCTCCTGGAGAAGCCATGGATGGAATGGATTTACCTCAGTGGGTGGCCTCAATAGTAAAGGAGGAGTGGACAAATGAAGTGTTTGATCTGGAGCTTATGAAAGACGCACCAAATATTGGTGATGAACTGCTGAACACCTTAAAACTAGCCCTGCATTGTGTCGATCCATCACCAGCTGCTCGGCCGGACATTCAGCAAATTCTCCAGCAACTGGAAGAAATTAAGACTTCTACTTCTGGTGAGGATAGCGCCAAAACTCAACCAGCAACTGAATAG 2565 45.42 MGKTHNPLSEFQVNPLQFMQFPVAITADWGSKSPNKSRKWKGQQWRSCSSYLTALFFAHLLAFSLQPVTGQMWDGVAVTQGDFQALQAIKHELIDLKGALRSWNGSTGACSGQWAGIKCVKGQVIAIQLPWKALAGRISDRIGQLRELRKLSLHDNVISGTVPRSLGLLPNLRGIYLFNNRFSGSIPPTIGNLPLLQTLDLSNNLLTGEIPSGLANSTKLIRVNLSYNSLSGSIPSSFTQSFSLTILALQHNNISGTVPDSWGGRTCPLAVITLDHNVISGAIPASLSKLEWLQEISISENKISGAIPGGIGKLKRLRLLDLSNNAINGGFPSSFSNLSSLELLNVENNRLESQIPGDIDRLQNLSVVKLGKNRFSGEIPASLGNISAITQLDFSENNFTGQIPTSLTSLLNLTSFNVSYNNLSGPVPVLLSNKFNASSFVGNLQLCGFSASTPCQPASSPQNITTPSSEVRKPHRRRKLSVKDIILIAAGALLVLLLLLCSILLCCLLSKRAAARKNDKTAGKQATARSIEKEAPGSTEVGTGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSTYGTAYKATLEDGNEVAVKRLREKTTKGQKEFETEVVALGKIRHPNLLALRAYYIGPKGEKLLVFDYMPRGSLSSFLHARGPETTVDWPMRMKIAIGITQGLNYLHTEENLIHGYLTSSNILLDDQTNARIADFGLPKLMTSAAATNVIATAGTQGYNAPELTKTKKTTTKTDVYSLGVIILELLTGKSPGEAMDGMDLPQWVASIVKEEWTNEVFDLELMKDAPNIGDELLNTLKLALHCVDPSPAARPDIQQILQQLEEIKTSTSGEDSAKTQPATE 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 179836 182976 + CmaCh14G000420.1 Cma14g00042 307025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00042 854 MobiDBLite consensus disorder prediction 519 543 - -
Cma14g00042 854 Gene3D Ribonuclease Inhibitor 81 191 IPR032675 -
Cma14g00042 854 Gene3D Ribonuclease Inhibitor 274 459 IPR032675 -
Cma14g00042 854 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 23 842 - -
Cma14g00042 854 Pfam Leucine rich repeat N-terminal domain 81 119 IPR013210 -
Cma14g00042 854 Pfam Leucine Rich Repeat 196 214 IPR001611 GO:0005515
Cma14g00042 854 Gene3D Phosphorylase Kinase; domain 1 572 643 - -
Cma14g00042 854 CDD STKc_IRAK 572 837 - -
Cma14g00042 854 PRINTS Leucine-rich repeat signature 196 209 - -
Cma14g00042 854 PRINTS Leucine-rich repeat signature 314 327 - -
Cma14g00042 854 ProSiteProfiles Protein kinase domain profile. 566 837 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma14g00042 854 Gene3D Ribonuclease Inhibitor 192 273 IPR032675 -
Cma14g00042 854 SUPERFAMILY Protein kinase-like (PK-like) 570 838 IPR011009 -
Cma14g00042 854 SMART LRR_typ_2 314 337 IPR003591 -
Cma14g00042 854 SMART LRR_typ_2 145 169 IPR003591 -
Cma14g00042 854 SMART LRR_typ_2 410 433 IPR003591 -
Cma14g00042 854 SMART LRR_typ_2 193 217 IPR003591 -
Cma14g00042 854 SMART LRR_typ_2 338 362 IPR003591 -
Cma14g00042 854 Pfam Leucine rich repeat 269 327 IPR001611 GO:0005515
Cma14g00042 854 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 23 842 - -
Cma14g00042 854 Pfam Protein tyrosine and serine/threonine kinase 570 834 IPR001245 GO:0004672|GO:0006468
Cma14g00042 854 Gene3D Transferase(Phosphotransferase) domain 1 644 852 - -
Cma14g00042 854 SUPERFAMILY L domain-like 101 447 - -
Cma14g00042 854 MobiDBLite consensus disorder prediction 833 854 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00322 Cma14g00042 CCT
Cma06g00213 Cma14g00042 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00042 Cma-Chr14:179836 Cma03g00702 Cma-Chr3:5732636 2.92E-57 dispersed
Cma14g00042 Cma-Chr14:179836 Cma04g00125 Cma-Chr4:592508 0 wgd
Cma14g00042 Cma-Chr14:179836 Cma04g01090 Cma-Chr4:5610847 0 wgd
Cma14g00042 Cma-Chr14:179836 Cma06g00213 Cma-Chr6:1087094 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69042 PF07714 PK_Tyr_Ser-Thr 1.50E-41 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00042 - - bhj:120090401 1417.14