Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00047 ATGAACAACACCGCCCAGCCGGGAAACATGGCCGCCGGATCCCCGCCATGGCTGAACACCGGCGACAACTCTTGGCAAATTACAGCCTCCACTCTCGTCGGACTTCAGAGCATGCCTGGCCTTGTGATTCTCTACGCCAGCATCGTCAAAAAGAAATGGGCCGTCAATTCTGCCTTTATGGTCCTCTACGCCTTCGCCGCCGTTCTAATTTGTTGGGTCCTCGTCGGTTACCGAATGGCATTTGGCGACCAGCTGGTTCCTCTGTGGGGCAAGGGGATTCCAGCTCTGACCCAAAGTTACCTAATTGACCGAGCCGATATCCCTGAGAGTGGCAATACAAACAACGATGGAAGGGTAACGCTCAGAATTGAACCCAATATTCCGATGGCTTCGCTCGTGTATTTCCAGTTCACTTTTGCTGCGATTACGGTGATTTTACTGGCTGGCTCTGTTCTTGCAAGAATGAACATCAAAGCTTGGATGGCGTTTGTTCCTCTTTGGGTAATTTTCGCATACACCGTCGGAGCATATTCTGTTTGGGGCGGAGGGTTTCTCTTTCAATGGGGCGTAATTGATTACTCCGGCGGCTACGTGATCCATCTCTCTTCAGGGATTGCTGGCCTGACCGCCGCTTATTGGGTTGGGCCGAGGATTAAGAGTGACAGGGAGAGGTTTCCGCCCAATAACGTACTGCTGATGCTGGCCGGAGCAGGGCTGCTGTGGATGGGATGGTCTGGATTTAACGGCGGGGCGCCGCACTCGGCGAACGTTGTCGCGTCGATAGCAGTGCTGAATACGAACGTGAGCGCCGCGACGAGCCTTCTGGTGTGGACCATTTTGGATGTGTTGTACTTTGGGAAGCCATCGGTGATTGGAGCCATTCAGGGTATGATGACTGGCTTGGCTTGCGTTACTCCCGGCGCAGGGGTAGTGCAGACGTGGGCGGCTATGATAATGGGGATTCTGGGAGGGAGCATTCCATGGGTATCCATGATGGTCCTTCATAAAAAATTGAGTTTCTTGCAAAAGGCTGACGACACGCTCGGCGTATTTCACACGCACGCGGTGGCGGGATTGATGGGCGGGCTTTTAACGGGGCTTTTAGCCGAGCCCACTCTATGCGATCTATACCTACCGATAACCGGCACACGGGGAGCCTTTTACGGCAAAAACGGCGGCGTTCAATTCCTGAAACAACTGGCCGGCTCCGCGTTTATTATAGGATGGAACATAGTGTCGACGACCATAATACTCCTCTTTATTCGGCTGTTTATGCCATTGAGGATGCCTGATGAGGCACTTATGATCGGCGATGACGCCGTCCACGGAGAGGAGGCTTATGCTCTTTGGGGCGACGGCGAGAAATTCGATCCCAGAAGGCACGGCACTGCGGGGAACAATATTGAAGAAGGAACGGCCTCGCCTTATATTCATGGTGCTAGAGGAGTAATCATCGAGTTGTAA 1464 53.14 MNNTAQPGNMAAGSPPWLNTGDNSWQITASTLVGLQSMPGLVILYASIVKKKWAVNSAFMVLYAFAAVLICWVLVGYRMAFGDQLVPLWGKGIPALTQSYLIDRADIPESGNTNNDGRVTLRIEPNIPMASLVYFQFTFAAITVILLAGSVLARMNIKAWMAFVPLWVIFAYTVGAYSVWGGGFLFQWGVIDYSGGYVIHLSSGIAGLTAAYWVGPRIKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPHSANVVASIAVLNTNVSAATSLLVWTILDVLYFGKPSVIGAIQGMMTGLACVTPGAGVVQTWAAMIMGILGGSIPWVSMMVLHKKLSFLQKADDTLGVFHTHAVAGLMGGLLTGLLAEPTLCDLYLPITGTRGAFYGKNGGVQFLKQLAGSAFIIGWNIVSTTIILLFIRLFMPLRMPDEALMIGDDAVHGEEAYALWGDGEKFDPRRHGTAGNNIEEGTASPYIHGARGVIIEL 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 204352 206182 + CmaCh14G000470.1 Cma14g00047 307030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00047 487 PANTHER AMMONIUM TRANSPORTER 2 10 484 - -
Cma14g00047 487 PANTHER AMMONIUM TRANSPORTER MEP2 10 484 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cma14g00047 487 SUPERFAMILY Ammonium transporter 17 429 - -
Cma14g00047 487 Gene3D Ammonium transporter AmtB like domains 2 450 IPR029020 -
Cma14g00047 487 ProSitePatterns Ammonium transporters signature. 192 217 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cma14g00047 487 TIGRFAM amt: ammonium transporter 22 447 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cma14g00047 487 PRINTS Rhesus blood group protein signature 136 152 IPR002229 GO:0005887
Cma14g00047 487 PRINTS Rhesus blood group protein signature 231 249 IPR002229 GO:0005887
Cma14g00047 487 PRINTS Rhesus blood group protein signature 262 284 IPR002229 GO:0005887
Cma14g00047 487 PRINTS Rhesus blood group protein signature 317 335 IPR002229 GO:0005887
Cma14g00047 487 PRINTS Rhesus blood group protein signature 355 371 IPR002229 GO:0005887
Cma14g00047 487 Pfam Ammonium Transporter Family 25 447 IPR024041 GO:0008519|GO:0016020|GO:0072488
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00216 Cma14g00047 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00406 Cma-Chr5:1788453 Cma14g00047 Cma-Chr14:204352 3.35E-177 dispersed
Cma08g01041 Cma-Chr8:6522942 Cma14g00047 Cma-Chr14:204352 1.16E-15 dispersed
Cma14g00047 Cma-Chr14:204352 Cma02g01713 Cma-Chr2:9641402 4.89E-19 dispersed
Cma14g00047 Cma-Chr14:204352 Cma06g00216 Cma-Chr6:1102589 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00047 K03320 - csv:101207321 882.863