Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00061 ATGGAAGGACATCATCCCCATCACCTTATTCCGCTCCACCACCAGCAACAGTTTCAACTCCGTCCACCGTCGCATCTCCACCAGAGCCTCACCGTCTCCGCCGATCCAACCCTAGCCGCCCCCGACAGATTCCCTCAATGGAGCCTTCAGGAAACAAAGGAGTTTTTGACGATCAGAGCCGAGCTGGATCGGACTTTCATGGAAACCAAACGAAACAAGCTCTTGTGGGAAATTACATCCTCCAAAATGAAGGAAAAGGGTTTCAATCGCAGCGCTGAACAGTGTAAATGTAAATGGAAAAACCTCGTTACTCATTATAAGGGTTGTGAAACAATGGAGCCAGAAAATTTAAGGCAACAATTTCCATTCTACACAGAACTAAAAGCAATTTTCGGAGCAAGAATGCAAAGGATGTTCATGGCGGAGGCGGAGAGCGGTGGGAGTGGATCGAAGAAGAAGATGAAGACATTATCGTCCGATGACGAGGAAGAAAACGAAGACAGTAACGGCGACGGGGGCGAGACGAAGGTTAACAGCAGGAAGAGGAAGAAGGTTAAAGGCACGACGATGGCGACAGACGGCGGAGGGGGAAGCGGTAGCCGTTTGAAAGAAATATTGGAAGATTTCATGAATCAACAAATGCAAATGGAGGTGCAGTGGAGGGAGGCATTTGAGGCAAGGGAAAAGGAGAGGGAAATGAGGGAAATGGAGTGGAGAAGGAACATGGAAGCTTTAGAACATGAGAGGATAATGTTGGAAAGAAGTTGGAGGGAAAGAGAAGAACAAAGGAGAATAAGAGAGGAAATTAGGGGTGAGAAAAGAGATGCCTTAATCACAGCCTTGTTAAACAAGATTAGAAGAGATGATCATATGTAG 876 46.69 MEGHHPHHLIPLHHQQQFQLRPPSHLHQSLTVSADPTLAAPDRFPQWSLQETKEFLTIRAELDRTFMETKRNKLLWEITSSKMKEKGFNRSAEQCKCKWKNLVTHYKGCETMEPENLRQQFPFYTELKAIFGARMQRMFMAEAESGGSGSKKKMKTLSSDDEEENEDSNGDGGETKVNSRKRKKVKGTTMATDGGGGSGSRLKEILEDFMNQQMQMEVQWREAFEAREKEREMREMEWRRNMEALEHERIMLERSWREREEQRRIREEIRGEKRDALITALLNKIRRDDHM 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 265014 266339 - CmaCh14G000610.1 Cma14g00061 307044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00061 291 Pfam Myb/SANT-like DNA-binding domain 46 130 IPR044822 -
Cma14g00061 291 PANTHER TRANSCRIPTION FACTOR MYB FAMILY-RELATED 1 288 - -
Cma14g00061 291 ProSiteProfiles Myb-like domain profile. 47 103 IPR001005 -
Cma14g00061 291 PANTHER - 1 288 - -
Cma14g00061 291 Gene3D - 47 108 - -
Cma14g00061 291 MobiDBLite consensus disorder prediction 142 200 - -
Cma14g00061 291 CDD GT1 45 110 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00346 Cma14g00061 CCT
Cma06g00225 Cma14g00061 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00068 Cma-Chr5:288554 Cma14g00061 Cma-Chr14:265014 5.05E-13 dispersed
Cma14g00061 Cma-Chr14:265014 Cma04g01418 Cma-Chr4:7250979 2.46E-14 dispersed
Cma04g00583 Cma-Chr4:2963403 Cma14g00061 Cma-Chr14:265014 3.94E-43 transposed
Cma14g00061 Cma-Chr14:265014 Cma03g00346 Cma-Chr3:4145982 1.44E-50 wgd
Cma14g00061 Cma-Chr14:265014 Cma06g00225 Cma-Chr6:1153663 7.41E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36161 PF13837 Myb_DNA-bind_4 2.80E-17 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00061 - - csv:101211490 374.015