Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00100 ATGGCGCCTCCGGAAGTTTCCCAATCCGACATTGATTTGGAACAGGGGAATCATCGGCGGTCTGTTAGTGGTAGTGATTTGAGCGCCGATTGTAGCGTCTATTTCTCTGACGCCGATGAGGGTTCGTGTCCCTCTCAGTTTTTGTCGACCAACGGAGGTTCTTATGATGAGTTTAGGTTTTCTTTTGTTTCTCAGCCGGAGGTTGGGGTTGCTCCGGATTCTCGCCGAGTTTCGTCGGTGGAGGTTCATTCGGTGGAGGTTGAAAATGAAAATGGGATTTCTGAAATCAAGGTGCATTTGGCTAAAGTAGAGAGGGATTGCAGGATTTGTCATTTGGGTTTGGAGAGTAATAGCCAAGAGTCTGGAATCCCAGTCGAATTGGGTTGTTCGTGCAAGGATGATTTGGCTGTTGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATTAAAGGAAACAAGACATGTGAGATTTGCCATTCCATTGCACAAAACATTGTCGAACCAAATGAGGTTGAGTTAACAGAGCAGTCTAATGAATCCAACAACGCCTCCTCAACAACTGCAGTTGCTGCATCAACTCCCCCATCAGACACCCAAAGCTTCTGGCGTGGGCACCGGTTTCTGAATTTTCTGCTTGCTTGTATGGTATTTGCTTTTGTTGTATCTTGGCTGTTTCACTTCAACGTGCCCACATAG 696 46.41 MAPPEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCPSQFLSTNGGSYDEFRFSFVSQPEVGVAPDSRRVSSVEVHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQESGIPVELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHSIAQNIVEPNEVELTEQSNESNNASSTTAVAASTPPSDTQSFWRGHRFLNFLLACMVFAFVVSWLFHFNVPT 231
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
14 436891 440091 + CmaCh14G001000.1 Cma14g00100 307083
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00100 231 MobiDBLite consensus disorder prediction 1 25 - -
Cma14g00100 231 Pfam RING-variant domain 107 158 IPR011016 GO:0008270
Cma14g00100 231 PANTHER ZINC FINGER, RING-CH-TYPE 8 230 - -
Cma14g00100 231 SUPERFAMILY RING/U-box 104 161 - -
Cma14g00100 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 167 IPR013083 -
Cma14g00100 231 SMART ringv_2 106 159 IPR011016 GO:0008270
Cma14g00100 231 PANTHER OS01G0850200 PROTEIN 8 230 - -
Cma14g00100 231 MobiDBLite consensus disorder prediction 172 197 - -
Cma14g00100 231 CDD RING_CH-C4HC3_MARCH 107 159 - -
Cma14g00100 231 ProSiteProfiles Zinc finger RING-CH-type profile. 99 165 IPR011016 GO:0008270
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cma07g01034 Cma14g00100 CCT
Cma07g01034 Cma14g00100 ECH
Cma06g00260 Cma14g00100 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01899 Cma-Chr11:12587588 Cma14g00100 Cma-Chr14:436891 7.32E-26 dispersed
Cma13g00092 Cma-Chr13:684315 Cma14g00100 Cma-Chr14:436891 3.85E-41 dispersed
Cma03g00037 Cma-Chr3:319971 Cma14g00100 Cma-Chr14:436891 3.98E-09 transposed
Cma07g01264 Cma-Chr7:7013501 Cma14g00100 Cma-Chr14:436891 2.90E-08 transposed
Cma14g00100 Cma-Chr14:436891 Cma15g00118 Cma-Chr15:544739 1.22E-47 wgd
Cma14g00100 Cma-Chr14:436891 Cma04g02928 Cma-Chr4:19321576 6.40E-74 wgd
Cma14g00100 Cma-Chr14:436891 Cma06g00260 Cma-Chr6:1296853 1.46E-149 wgd
Cma14g00100 Cma-Chr14:436891 Cma07g01034 Cma-Chr7:5397563 6.84E-59 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00100 - - csv:101218915 385.185