Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma14g00100 | ATGGCGCCTCCGGAAGTTTCCCAATCCGACATTGATTTGGAACAGGGGAATCATCGGCGGTCTGTTAGTGGTAGTGATTTGAGCGCCGATTGTAGCGTCTATTTCTCTGACGCCGATGAGGGTTCGTGTCCCTCTCAGTTTTTGTCGACCAACGGAGGTTCTTATGATGAGTTTAGGTTTTCTTTTGTTTCTCAGCCGGAGGTTGGGGTTGCTCCGGATTCTCGCCGAGTTTCGTCGGTGGAGGTTCATTCGGTGGAGGTTGAAAATGAAAATGGGATTTCTGAAATCAAGGTGCATTTGGCTAAAGTAGAGAGGGATTGCAGGATTTGTCATTTGGGTTTGGAGAGTAATAGCCAAGAGTCTGGAATCCCAGTCGAATTGGGTTGTTCGTGCAAGGATGATTTGGCTGTTGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATTAAAGGAAACAAGACATGTGAGATTTGCCATTCCATTGCACAAAACATTGTCGAACCAAATGAGGTTGAGTTAACAGAGCAGTCTAATGAATCCAACAACGCCTCCTCAACAACTGCAGTTGCTGCATCAACTCCCCCATCAGACACCCAAAGCTTCTGGCGTGGGCACCGGTTTCTGAATTTTCTGCTTGCTTGTATGGTATTTGCTTTTGTTGTATCTTGGCTGTTTCACTTCAACGTGCCCACATAG | 696 | 46.41 | MAPPEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCPSQFLSTNGGSYDEFRFSFVSQPEVGVAPDSRRVSSVEVHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQESGIPVELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHSIAQNIVEPNEVELTEQSNESNNASSTTAVAASTPPSDTQSFWRGHRFLNFLLACMVFAFVVSWLFHFNVPT | 231 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 436891 | 440091 | + | CmaCh14G001000.1 | Cma14g00100 | 307083 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma14g00100 | 231 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Cma14g00100 | 231 | Pfam | RING-variant domain | 107 | 158 | IPR011016 | GO:0008270 | |
| Cma14g00100 | 231 | PANTHER | ZINC FINGER, RING-CH-TYPE | 8 | 230 | - | - | |
| Cma14g00100 | 231 | SUPERFAMILY | RING/U-box | 104 | 161 | - | - | |
| Cma14g00100 | 231 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 167 | IPR013083 | - | |
| Cma14g00100 | 231 | SMART | ringv_2 | 106 | 159 | IPR011016 | GO:0008270 | |
| Cma14g00100 | 231 | PANTHER | OS01G0850200 PROTEIN | 8 | 230 | - | - | |
| Cma14g00100 | 231 | MobiDBLite | consensus disorder prediction | 172 | 197 | - | - | |
| Cma14g00100 | 231 | CDD | RING_CH-C4HC3_MARCH | 107 | 159 | - | - | |
| Cma14g00100 | 231 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 99 | 165 | IPR011016 | GO:0008270 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma07g01034 | Cma14g00100 | CCT | |
| Cma07g01034 | Cma14g00100 | ECH | |
| Cma06g00260 | Cma14g00100 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma11g01899 | Cma-Chr11:12587588 | Cma14g00100 | Cma-Chr14:436891 | 7.32E-26 | dispersed | |
| Cma13g00092 | Cma-Chr13:684315 | Cma14g00100 | Cma-Chr14:436891 | 3.85E-41 | dispersed | |
| Cma03g00037 | Cma-Chr3:319971 | Cma14g00100 | Cma-Chr14:436891 | 3.98E-09 | transposed | |
| Cma07g01264 | Cma-Chr7:7013501 | Cma14g00100 | Cma-Chr14:436891 | 2.90E-08 | transposed | |
| Cma14g00100 | Cma-Chr14:436891 | Cma15g00118 | Cma-Chr15:544739 | 1.22E-47 | wgd | |
| Cma14g00100 | Cma-Chr14:436891 | Cma04g02928 | Cma-Chr4:19321576 | 6.40E-74 | wgd | |
| Cma14g00100 | Cma-Chr14:436891 | Cma06g00260 | Cma-Chr6:1296853 | 1.46E-149 | wgd | |
| Cma14g00100 | Cma-Chr14:436891 | Cma07g01034 | Cma-Chr7:5397563 | 6.84E-59 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma14g00100 | - | - | csv:101218915 | 385.185 |