Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00107 ATGGCTGAAGGTATTGAATCCTTCGACCATGTCCCTCAACAAAGCCGGCGCGACAAGCTCCGGGAACATTCCGACCACCGTTCCACTTTCCTCCCTTTCTACGACGACCCTTCATCCTTAATCTCCCCCCCATCCGACTCCACCCATCGTTTCCAATTCCACCACCACCCTTTTTTCGACCCCCAAATCCAATCCTCTCTCTTACCCGACATCCATCAACAAAACCATTGCTTCACCTCCGAGCCTCTCTCCCTCTCCCTCTCCTCTCAGCCCTTCCTCGCCGCCCCTATTCCCCCCGCCCTCCCTCTCGGCCCCTTCACCGGCTACGCTTCCATTTTAAAAGGCTCCAGGTTTTTGAAGCCTGCCCACCAGTTGCTAGAGGAGCTTTGCGATGTGGTTGGCCTTCATCCCGCCTTCCCCTCCTCTTCCTCCCTTAACTCTCCTCCTTCTCCTTCTCCCTCTCCCTCTGCTTTCATGGATGATCCTTCCTCTGACTCTCCAATTCTCGACCACCATCCCCTTGCTTCCTCTCATTCTGCCCCTCCTATTAAATCCACCCTTCTCTCAATGCTCGATGAGATTTACAGGAAATATAAGCAGTACTATCAACAAGTTCAGGAAGTAATGACATCTTTTGAGTACATCTCCGGCCTCGGGAATGCAGCGCCCTACGCGAACCAGGCCATTAAAGTGATGTACAAGCATTTCAAGTGCTTGAAAAATGCAATTCTTGACCAACTTCAATTCAATAAGAAGACTCGTGGTGACTACAGTCAAAGATCCGGTCAGAACCCGGGATTTCTCGATCATCAGCCTGTTTGGCGACCGCAACGGGGGCTTCCCGAACGAGCAGTCACCGTTCTTCGTGCTTGGTTGTTCGAACATTTTTTGCATCCTTATCCTTCTGATACAGACAAGCTTATGTTGGCAAAACAGACTGGCCTGTCTCGTAGTCAGGTATCTAACTGGTTCATTAATGCAAGAGTTAGGCTTTGGAAGCCAATGGTTGAAGAAATATACATGCTTGAGACCAAGCAAACGCAGAAGAATTTGCATAGAGATGATCGTGACCCCTGCAACAGGCTAAACGATCATCATCCAACAAACTTGCTTGCCATCGATAACCCCTCTAAATCCACTCAAGAAATTCAAGATACTCCTACCAAACGTACCCGAAACAAACTTCACGACGTGCCAATGGGAGATAACGACGAGCCCTTGAACGTGTCTTACAACGTTTCGAGCCATCCCCATGTAGGCTCAAATGCAAATATGGGGGGGAACAACAATGGAGTTTCGCTAACTCTTGGTCTTCACCAGAACAACAACAACAACGGCATTGGTGGTGGCTTTTCAGAACCCTTTCCTGTTGGGTTCCCCGTTGCGGCGACTCGACGGTTCGGGCTGGGAATTCAAGGCAATAGTGATGGGTATGTAATGGGAGGACATTTTGGTAGAGATGTTGTTGGAGGGCAGCTGTTACATGACTTTGTAGGGTGA 1500 49.53 MAEGIESFDHVPQQSRRDKLREHSDHRSTFLPFYDDPSSLISPPSDSTHRFQFHHHPFFDPQIQSSLLPDIHQQNHCFTSEPLSLSLSSQPFLAAPIPPALPLGPFTGYASILKGSRFLKPAHQLLEELCDVVGLHPAFPSSSSLNSPPSPSPSPSAFMDDPSSDSPILDHHPLASSHSAPPIKSTLLSMLDEIYRKYKQYYQQVQEVMTSFEYISGLGNAAPYANQAIKVMYKHFKCLKNAILDQLQFNKKTRGDYSQRSGQNPGFLDHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPSDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIYMLETKQTQKNLHRDDRDPCNRLNDHHPTNLLAIDNPSKSTQEIQDTPTKRTRNKLHDVPMGDNDEPLNVSYNVSSHPHVGSNANMGGNNNGVSLTLGLHQNNNNNGIGGGFSEPFPVGFPVAATRRFGLGIQGNSDGYVMGGHFGRDVVGGQLLHDFVG 499
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
14 468152 471592 + CmaCh14G001070.1 Cma14g00107 307090
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00107 499 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 64 444 - -
Cma14g00107 499 CDD homeodomain 274 335 IPR001356 GO:0003677
Cma14g00107 499 SUPERFAMILY Homeodomain-like 276 341 IPR009057 -
Cma14g00107 499 Pfam Homeobox KN domain 291 330 IPR008422 GO:0003677|GO:0006355
Cma14g00107 499 MobiDBLite consensus disorder prediction 385 401 - -
Cma14g00107 499 Gene3D - 277 339 - -
Cma14g00107 499 MobiDBLite consensus disorder prediction 1 23 - -
Cma14g00107 499 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 9 64 444 - -
Cma14g00107 499 Pfam Associated with HOX 112 243 IPR006563 -
Cma14g00107 499 MobiDBLite consensus disorder prediction 379 404 - -
Cma14g00107 499 ProSiteProfiles 'Homeobox' domain profile. 271 334 IPR001356 GO:0003677
Cma14g00107 499 SMART prehox3 107 245 IPR006563 -
Cma14g00107 499 MobiDBLite consensus disorder prediction 141 179 - -
Cma14g00107 499 SMART HOX_1 274 338 IPR001356 GO:0003677
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cma03g00397 Cma14g00107 CCT
Cma03g00397 Cma14g00107 ECH
Cma06g00271 Cma14g00107 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00107 Cma-Chr14:468152 Cma20g00147 Cma-Chr20:726212 5.86E-68 dispersed
Cma14g00107 Cma-Chr14:468152 Cma03g00397 Cma-Chr3:4419767 6.41E-114 wgd
Cma14g00107 Cma-Chr14:468152 Cma06g00271 Cma-Chr6:1331793 0 wgd
Cma14g00107 Cma-Chr14:468152 Cma07g01019 Cma-Chr7:5289253 4.71E-63 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36162 PF07526 POX 2.80E-30 No_clan Cma TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00107 - - cmax:111481510 937.176