Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma14g00107 | ATGGCTGAAGGTATTGAATCCTTCGACCATGTCCCTCAACAAAGCCGGCGCGACAAGCTCCGGGAACATTCCGACCACCGTTCCACTTTCCTCCCTTTCTACGACGACCCTTCATCCTTAATCTCCCCCCCATCCGACTCCACCCATCGTTTCCAATTCCACCACCACCCTTTTTTCGACCCCCAAATCCAATCCTCTCTCTTACCCGACATCCATCAACAAAACCATTGCTTCACCTCCGAGCCTCTCTCCCTCTCCCTCTCCTCTCAGCCCTTCCTCGCCGCCCCTATTCCCCCCGCCCTCCCTCTCGGCCCCTTCACCGGCTACGCTTCCATTTTAAAAGGCTCCAGGTTTTTGAAGCCTGCCCACCAGTTGCTAGAGGAGCTTTGCGATGTGGTTGGCCTTCATCCCGCCTTCCCCTCCTCTTCCTCCCTTAACTCTCCTCCTTCTCCTTCTCCCTCTCCCTCTGCTTTCATGGATGATCCTTCCTCTGACTCTCCAATTCTCGACCACCATCCCCTTGCTTCCTCTCATTCTGCCCCTCCTATTAAATCCACCCTTCTCTCAATGCTCGATGAGATTTACAGGAAATATAAGCAGTACTATCAACAAGTTCAGGAAGTAATGACATCTTTTGAGTACATCTCCGGCCTCGGGAATGCAGCGCCCTACGCGAACCAGGCCATTAAAGTGATGTACAAGCATTTCAAGTGCTTGAAAAATGCAATTCTTGACCAACTTCAATTCAATAAGAAGACTCGTGGTGACTACAGTCAAAGATCCGGTCAGAACCCGGGATTTCTCGATCATCAGCCTGTTTGGCGACCGCAACGGGGGCTTCCCGAACGAGCAGTCACCGTTCTTCGTGCTTGGTTGTTCGAACATTTTTTGCATCCTTATCCTTCTGATACAGACAAGCTTATGTTGGCAAAACAGACTGGCCTGTCTCGTAGTCAGGTATCTAACTGGTTCATTAATGCAAGAGTTAGGCTTTGGAAGCCAATGGTTGAAGAAATATACATGCTTGAGACCAAGCAAACGCAGAAGAATTTGCATAGAGATGATCGTGACCCCTGCAACAGGCTAAACGATCATCATCCAACAAACTTGCTTGCCATCGATAACCCCTCTAAATCCACTCAAGAAATTCAAGATACTCCTACCAAACGTACCCGAAACAAACTTCACGACGTGCCAATGGGAGATAACGACGAGCCCTTGAACGTGTCTTACAACGTTTCGAGCCATCCCCATGTAGGCTCAAATGCAAATATGGGGGGGAACAACAATGGAGTTTCGCTAACTCTTGGTCTTCACCAGAACAACAACAACAACGGCATTGGTGGTGGCTTTTCAGAACCCTTTCCTGTTGGGTTCCCCGTTGCGGCGACTCGACGGTTCGGGCTGGGAATTCAAGGCAATAGTGATGGGTATGTAATGGGAGGACATTTTGGTAGAGATGTTGTTGGAGGGCAGCTGTTACATGACTTTGTAGGGTGA | 1500 | 49.53 | MAEGIESFDHVPQQSRRDKLREHSDHRSTFLPFYDDPSSLISPPSDSTHRFQFHHHPFFDPQIQSSLLPDIHQQNHCFTSEPLSLSLSSQPFLAAPIPPALPLGPFTGYASILKGSRFLKPAHQLLEELCDVVGLHPAFPSSSSLNSPPSPSPSPSAFMDDPSSDSPILDHHPLASSHSAPPIKSTLLSMLDEIYRKYKQYYQQVQEVMTSFEYISGLGNAAPYANQAIKVMYKHFKCLKNAILDQLQFNKKTRGDYSQRSGQNPGFLDHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPSDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIYMLETKQTQKNLHRDDRDPCNRLNDHHPTNLLAIDNPSKSTQEIQDTPTKRTRNKLHDVPMGDNDEPLNVSYNVSSHPHVGSNANMGGNNNGVSLTLGLHQNNNNNGIGGGFSEPFPVGFPVAATRRFGLGIQGNSDGYVMGGHFGRDVVGGQLLHDFVG | 499 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 468152 | 471592 | + | CmaCh14G001070.1 | Cma14g00107 | 307090 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma14g00107 | 499 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 64 | 444 | - | - | |
Cma14g00107 | 499 | CDD | homeodomain | 274 | 335 | IPR001356 | GO:0003677 | |
Cma14g00107 | 499 | SUPERFAMILY | Homeodomain-like | 276 | 341 | IPR009057 | - | |
Cma14g00107 | 499 | Pfam | Homeobox KN domain | 291 | 330 | IPR008422 | GO:0003677|GO:0006355 | |
Cma14g00107 | 499 | MobiDBLite | consensus disorder prediction | 385 | 401 | - | - | |
Cma14g00107 | 499 | Gene3D | - | 277 | 339 | - | - | |
Cma14g00107 | 499 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cma14g00107 | 499 | PANTHER | BEL1-LIKE HOMEODOMAIN PROTEIN 9 | 64 | 444 | - | - | |
Cma14g00107 | 499 | Pfam | Associated with HOX | 112 | 243 | IPR006563 | - | |
Cma14g00107 | 499 | MobiDBLite | consensus disorder prediction | 379 | 404 | - | - | |
Cma14g00107 | 499 | ProSiteProfiles | 'Homeobox' domain profile. | 271 | 334 | IPR001356 | GO:0003677 | |
Cma14g00107 | 499 | SMART | prehox3 | 107 | 245 | IPR006563 | - | |
Cma14g00107 | 499 | MobiDBLite | consensus disorder prediction | 141 | 179 | - | - | |
Cma14g00107 | 499 | SMART | HOX_1 | 274 | 338 | IPR001356 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma03g00397 | Cma14g00107 | CCT | |
Cma03g00397 | Cma14g00107 | ECH | |
Cma06g00271 | Cma14g00107 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma14g00107 | Cma-Chr14:468152 | Cma20g00147 | Cma-Chr20:726212 | 5.86E-68 | dispersed | |
Cma14g00107 | Cma-Chr14:468152 | Cma03g00397 | Cma-Chr3:4419767 | 6.41E-114 | wgd | |
Cma14g00107 | Cma-Chr14:468152 | Cma06g00271 | Cma-Chr6:1331793 | 0 | wgd | |
Cma14g00107 | Cma-Chr14:468152 | Cma07g01019 | Cma-Chr7:5289253 | 4.71E-63 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36162 | PF07526 | POX | 2.80E-30 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma14g00107 | - | - | cmax:111481510 | 937.176 |