Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00142 ATGGATCCACGCTTTACACGACAAGCTGGTTCCACGAATGAAATTCTTATAGGTAATCGTCCCTTCGCGGTTCAAGCACAAGAGAATGCTCTTGGAAGGCCCATGTTTCAGGATACCGTATTGAGTCATAACTTTGAAGAATTTAATTGCTTTCCTCTCGATCCATCACCGAATAACATGGCCTCAAGTTCCAGTATTAGAACCTCATCTTCTAATGAGGCGAGCCATGAGGAAGATTATCTGGAAGATTACGATTTCTCTGATGCTGTTTTGAGATTCATAAATCAGATTCTCATGGAAGAAGATATGGAGGACAAGACTTGCATGCTTCAAGATTCTTTGGATCTTCAAGCTGCTGAGAAATCATTCTACGAGGTCCTTGGAAAAAAGTATCCTCCTTCTCCAGAACCGAATAGATCTCTGGCCAATCAATACAGTGATAGCTTCTATGAAGAACTTTGTGGAGATAGTATTAATTGCCTGAATAGTTATCGTAATACTTTTTATTATGGTGATGATAACCCTTTTCAAACTCTGGGTGAGGATGTATTTCAAATCAGAAGCACTTTAGATGATATCATTTCTCCATCATCTCATAGCTCCTCGAATAGTATTATTAGTGGGGCTGATGGGTGGGTGGACTTCTCGAATAATACAATTCTAGTCCCTGAGCCTAATAACAGAAGCCAATCCATTTGGCAGTTTCAAAAAGGGTTTGAAGAGGCTAGCAAATTTTTACCTGGTGAAAACAACTTGTGTCTTGATTTTGAGGTAAATGAGCCAGCAACTCAGGGTCCGGAGGAGGAAACGAGCGAGATATATTTGAAGGCAGGAAGAAAGGATCAGAAGAGTGTTTTGTCACTTGAATCACGTGGAAGAAAGAATCCTCATGATGAGGATGGAGATTTGGAAGAAGAGAGATGCCGCAAGCAAGCAGCTCTATTTACAGAGTCAACCTTGCGATCTAAGATGTTTGATATTGTGTTGCTTTGTAGTGCAGGGGAGGGGCGTGAACGGTTAGTTTCATTTCGACAGGAATTACAGAATGCTAAAATCAAAAGCATGCTGCAGAATGGGCAACTAAAAGAGTTTAGAGGTGGGAGGGGTCGTCGGAAGAAGCATAGTGGGAAAAAGGAGGTTGTGGATTTGAGAACTCTTCTAATTAGCTGTGCTCAAGCTATTGCAGCTGATGACCATAGGAATGCCAGTGAGCTTCTAAAGAAGATCAGGCAACATGCTTCTCCTTTTGGGGATGGAAATCAGAGGTTGGCTAATTGTTTTGCTGATGGTCTGGAGGCACGCTTGGCAGGTACTGGTAGCCAGATTTACAAAGGTCTAGTTAATAAAAGAACATCTGCTGCCGATGAATTGAAAGCTTACCACTTGTACCTTGCTGCATGCCCATTTAGAAAGATCTCTAATTTTACTTCAAACAGGACTATAATGATTGCTGCAGAGAATGCAACGAAGCTTCATGTCATAGATTTTGGTATCCTTTACGGTTTCCAGTGGCCTACTTTAATCCAGAGATTGTCATGGAGAGAAGGTGGACCTCCAAAGCTTCGAATTACTGGAATAGAATTTCCCCAGCCTGGATTTCGTCCTGCGGAGAGAGTTGAGGAGACAGGTCGTCGCTTGGCGGCCTATGCAGAGAGTTTCAACGTGCCATTTGAGTATAATGCTATAGCAAAAAAATGGGAAAATATTTCTGTGGAAGAACTCAATATCCATCAAGATGAGTTCCTCGTTGTGAACTGTTTGTATCGAGCAAAAAATTTGTCTGATGAGAGTGTTGCCACAGAGAGTGCCAGAAGTTCTGTTTTTAGATTGATACACAAAATTAAACCCAACTTATTCATCAGTGGCGTTGTCAACGGGGCATACAATGCACCTTTCTTCGTTACCCGATTTCGAGAGGCATTGTTTCACTTTTCTGCTATCTTTGATATGCTTGAAACTGTTGTACCTCGTGAGGATTGGGAGAGAATGCTGTTGGAGAGAGAGATCTTTGGCAGGGAGGCTTTAAATGTTATAGCATGTGAGGGATGGGAGAGAGTGGAAAGACCAGAAACATACAAGCAGTGGCAATTTTGGATCATGAGGGCTGGATTTGTGCAACTGCCATTTTATCCTGAGATTTTTGAGAGAGCAGTTGAAAAGGTGCGGTCAAGTTACCACAGAGATTTTTTGATTGATGAAGATAGTAGATGGATACTGCAGGGATGGAAAGGTCGAATTATATATGCCATTTCTGCATGGAAACCTGCTGCAGAGTAA 2277 41.9 MDPRFTRQAGSTNEILIGNRPFAVQAQENALGRPMFQDTVLSHNFEEFNCFPLDPSPNNMASSSSIRTSSSNEASHEEDYLEDYDFSDAVLRFINQILMEEDMEDKTCMLQDSLDLQAAEKSFYEVLGKKYPPSPEPNRSLANQYSDSFYEELCGDSINCLNSYRNTFYYGDDNPFQTLGEDVFQIRSTLDDIISPSSHSSSNSIISGADGWVDFSNNTILVPEPNNRSQSIWQFQKGFEEASKFLPGENNLCLDFEVNEPATQGPEEETSEIYLKAGRKDQKSVLSLESRGRKNPHDEDGDLEEERCRKQAALFTESTLRSKMFDIVLLCSAGEGRERLVSFRQELQNAKIKSMLQNGQLKEFRGGRGRRKKHSGKKEVVDLRTLLISCAQAIAADDHRNASELLKKIRQHASPFGDGNQRLANCFADGLEARLAGTGSQIYKGLVNKRTSAADELKAYHLYLAACPFRKISNFTSNRTIMIAAENATKLHVIDFGILYGFQWPTLIQRLSWREGGPPKLRITGIEFPQPGFRPAERVEETGRRLAAYAESFNVPFEYNAIAKKWENISVEELNIHQDEFLVVNCLYRAKNLSDESVATESARSSVFRLIHKIKPNLFISGVVNGAYNAPFFVTRFREALFHFSAIFDMLETVVPREDWERMLLEREIFGREALNVIACEGWERVERPETYKQWQFWIMRAGFVQLPFYPEIFERAVEKVRSSYHRDFLIDEDSRWILQGWKGRIIYAISAWKPAAE 758
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 584353 586629 - CmaCh14G001420.1 Cma14g00142 307125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00142 758 PANTHER SCARECROW-LIKE PROTEIN 9 35 755 - -
Cma14g00142 758 MobiDBLite consensus disorder prediction 285 305 - -
Cma14g00142 758 Pfam GRAS domain family 383 754 IPR005202 -
Cma14g00142 758 ProSiteProfiles GRAS family profile. 374 754 IPR005202 -
Cma14g00142 758 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 35 755 IPR005202 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00294 Cma14g00142 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00142 Cma-Chr14:584353 Cma20g00670 Cma-Chr20:3070596 3.46E-69 dispersed
Cma01g00616 Cma-Chr1:3211473 Cma14g00142 Cma-Chr14:584353 0 wgd
Cma13g00118 Cma-Chr13:798320 Cma14g00142 Cma-Chr14:584353 0 wgd
Cma14g00142 Cma-Chr14:584353 Cma02g00793 Cma-Chr2:4707257 0 wgd
Cma14g00142 Cma-Chr14:584353 Cma20g00394 Cma-Chr20:1888552 0 wgd
Cma14g00142 Cma-Chr14:584353 Cma06g00294 Cma-Chr6:1409245 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36164 PF03514 GRAS 8.10E-115 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00142 - - csv:101205887 1271.53