Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00157 ATGAATTTCTCCTCCATTCCTCCTTATCTTGATCCTTCCAACTGGCACCAGCAACTCACCCACCAACTGCCAACCACCACCACCACCACCACCGGAGCCAGCTCTCAGCTCCTACCTCCACCCCCTCCTCCGCCTCCTCCCCCACCCCCCCATGGCGTCGGTGCTCCCACTTCCATCCGCCCCGGTTCGATGGCCGAGCGAGCTCGAATGGCTAATATTCCCATGCCTGAGGCAGCATTGAAATGCCCAAGATGTGATTCAACCAACACTAAGTTCTGCTACTTCAACAATTACAGCCTCACTCAACCTCGCCACTTTTGTAAGACATGTCGAAGGTACTGGACCAGAGGTGGGACGCTGCGAAGCGTTCCAGTCGGGGGCGGGTGCCGGAGGAACAAAAGAAGCAAAGGGAGAAGTTCCAAGTCGCCGCCGGCCAGTTCCGACCGACAACAAACCTGTGGTTCAGGGAATTCCTCATCAAGTGCAATAGCTTCCAACAACAGTGGAGGCCTTTCCCCACAGATTCCACCTCTCCGCTTTATGGCCCCTCTCCACCAACAACTCAGCGACTTCGACATCGGTGGCTTCAACTATGGCGGTGGCCTCTCAGCTCCGGCCACTGTTACCGGCGATCTGAATTTCCAATTGGGCAACACTAATTTAGGTGGAGGAACAAGCATTGGATCTCTGTTGGGATTTGACCAACAATGGCGGCTCCAGCAACAAGTTCCTCCTCAATTCCCCTTCTTCTCCGGGTTAGACCCCTTCGACGGTGGTAGCAGTAGCGGCGGTGACGGACCCAGCTGGGAAATGAGGCAAAAATTACCATCAAGCTCAAGGAATTTAACCCAAATGGGGAATTCAGTAAAAATGGAAGAAACCCCAGATCAAGGTAATAACATTGGAAGAACATTAGTTGGCAATGAACAATATTGGAGCAGTGGATCAATGGGATGGTCGGATCCTTCTGGTTTCAGTTNTTCATCTTCAACAAGAAACCCATTGTAG 1008 52.38 MNFSSIPPYLDPSNWHQQLTHQLPTTTTTTTGASSQLLPPPPPPPPPPPPHGVGAPTSIRPGSMAERARMANIPMPEAALKCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGTLRSVPVGGGCRRNKRSKGRSSKSPPASSDRQQTCGSGNSSSSAIASNNSGGLSPQIPPLRFMAPLHQQLSDFDIGGFNYGGGLSAPATVTGDLNFQLGNTNLGGGTSIGSLLGFDQQWRLQQQVPPQFPFFSGLDPFDGGSSSGGDGPSWEMRQKLPSSSRNLTQMGNSVKMEETPDQGNNIGRTLVGNEQYWSSGSMGWSDPSGFSXSSSTRNPL 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 642222 643809 + CmaCh14G001570.1 Cma14g00157 307140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00157 335 MobiDBLite consensus disorder prediction 1 72 - -
Cma14g00157 335 MobiDBLite consensus disorder prediction 1 35 - -
Cma14g00157 335 MobiDBLite consensus disorder prediction 248 335 - -
Cma14g00157 335 ProSiteProfiles Zinc finger Dof-type profile. 80 134 IPR003851 GO:0003677|GO:0006355
Cma14g00157 335 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 4 330 IPR045174 GO:0003700|GO:0006355
Cma14g00157 335 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 4 330 - -
Cma14g00157 335 ProSitePatterns Zinc finger Dof-type signature. 82 118 IPR003851 GO:0003677|GO:0006355
Cma14g00157 335 MobiDBLite consensus disorder prediction 36 55 - -
Cma14g00157 335 MobiDBLite consensus disorder prediction 121 178 - -
Cma14g00157 335 Pfam Dof domain, zinc finger 79 134 IPR003851 GO:0003677|GO:0006355
Cma14g00157 335 MobiDBLite consensus disorder prediction 139 173 - -
Cma14g00157 335 MobiDBLite consensus disorder prediction 272 335 - -
Cma14g00157 335 SUPERFAMILY Formin homology 2 domain (FH2 domain) 39 49 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00431 Cma14g00157 CCT
Cma03g00431 Cma14g00157 ECH
Cma06g00304 Cma14g00157 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02639 Cma-Chr4:17995394 Cma14g00157 Cma-Chr14:642222 1.72E-57 dispersed
Cma14g00157 Cma-Chr14:642222 Cma15g00398 Cma-Chr15:1778177 1.16E-46 dispersed
Cma01g00595 Cma-Chr1:3123663 Cma14g00157 Cma-Chr14:642222 5.23E-66 wgd
Cma13g00133 Cma-Chr13:909757 Cma14g00157 Cma-Chr14:642222 1.63E-53 wgd
Cma14g00157 Cma-Chr14:642222 Cma02g00812 Cma-Chr2:4795103 5.91E-44 wgd
Cma14g00157 Cma-Chr14:642222 Cma20g00412 Cma-Chr20:1971141 9.52E-42 wgd
Cma14g00157 Cma-Chr14:642222 Cma03g00431 Cma-Chr3:4562700 5.69E-50 wgd
Cma14g00157 Cma-Chr14:642222 Cma04g00219 Cma-Chr4:1060358 9.44E-47 wgd
Cma14g00157 Cma-Chr14:642222 Cma04g01188 Cma-Chr4:6067895 1.03E-54 wgd
Cma14g00157 Cma-Chr14:642222 Cma06g00304 Cma-Chr6:1443954 1.77E-135 wgd
Cma14g00157 Cma-Chr14:642222 Cma07g00977 Cma-Chr7:4730534 9.91E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36166 PF02701 zf-Dof 6.20E-32 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00157 - - cpep:111791192 489.189