Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00167 ATGGGAGAAGAAGCAGCTGCTTTGGCTGCAGTTACAAATGAGCCGTTGGGGAAAGAGAGCGCTCCGAGTACCGAATTGAAGCGGGACCATCAGTGTCTTGATGAAGATACGGAGCCCGAGGCTTTTCACAACAAGAAGCAGGCTAAAGAAGTGTCGAATGAAGATGTTCGTTCAGAAGTTTCGAATCCCGTAATTTCTCCGAAAGGGAATAATTTCCAAGATATTACCAGCCAACCTGAGGAGCAAAAAAATACCAACCAAGTTGAGCGTGGGGACCTTACCTCGGCTTGTTCGGGTAATTCAAGCTCGGAGGACATCTCTAGCAATGGAGTTCGTTGCCAGAATGACACGTCTCGAAATGACGTTGATATGTGTGATGTTGATGAGGTCTCTCGGTTTGTGATTGAAATACCCAAGCATGCTAGTTCAACTGGAATTAGAAAAATTACGTTCAAGTTCAGCAAAAAAAAGGACAAAAATGCCGCATCCATGTCAGCAGACAAAGTTTGTTCATATGGGAACTTCGACAAGGACTGTAAACCAGAACCTTCACTGGTGGACGATGCTTGTACGGAGACATCTGCACATAGCTGGGAAGGCATTGCTGAGAGCAGCAGGTATCCTTTAGGTTCAAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCAAACAATTACCCGTCAAATGTTAAAAAGCTACTGTCGACTGGTATACTTGACGGAGCTCGAGTCAAGTATATATCTACGACAAGCGAGATGAAGCTACATGGTATTATAAATGGCGGAGGTTATATGTGCGGATGTTCAATATGCAATTTTACAACTATCCTCAGTGCTTATGAGTTTGAGCAGCACGCTGGTTTCAAGACTAGACATCCAAATAATCATATATACCTGGAGAATGGGAGGCCAATTTATAGTGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTAAGGAAGTAGCGGGTTCATGTATTAACGTGGATTCATTTGAGGTTTGGAAAGCAAATTTCCACCAGAACAGTGCAATTATTGAAGTGGAAAATGATGATGTGAAGGTTCCTAAGTTGTCACATCCCATTGACAGGCCAATCCCTAATTTATCCAACCCAGTTATGCAACAGAAGAAAACGGCAGAAAAAGGCACAAAAAGAAGGGATAATGATCTTCACAGGCTACTTTTCATGCCAAATGGGCTTCCAGATGGGGCTGAGCTGGCATACTTTGTTAAAGGACAGGCTACAAGCAAGGAAATGGCATACTCTGTACTCACTGTAATCGAGAGCCGTTTCACAAATTTGAAACAGATCAGCCCTTCACAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAGCCCTACCGCCACATTTATATTACAAATGGACTTACGCTTCATGATATAGCCATTTCCTTGGCTAGTGGGCAAAAACTTACCACAGGAGATAGTGATGATATGTGCGCTGCATGTGGTAATGGAGGGGATTTGATTTTCTGTGATCGCTGCCCTCGAGCTTTCCATACAGGCTGCCTGCATCTACAGAATGTTCCTGAAGGAGTTTGGTCTTGCCCAAACTGTAGAGATAAAGTGGGTTCCAATTTGAAGGCTCCTTCCGGAGGTTCTTTGAGTTTTTCAAAACCAATTGTATTTAGGTTGACACGAGTTGTTAAAGCACCTGAATATGAAATTGGTGGTTGTGTTGTTTGCAGATACAACTTCTCACAATCTTGTAGGCGACATGATTTCAGTGCTGCTAAATTTGATGATCGAACTGTACTTCTTTGTGATCAATGTGAAAGAGAATTCCATGTAGGCTGTCTGCGGGATAGTGGATTATGTGATCTGAAGGAACTTCCCAAGGACAAGTGGTTCTGCTGTGACGAGTGCAGTAATATCCATGTGGCTTTTCAGAATACAGTTTTGAACGGGGCACAGATCATTCCAGATTCCTTATCAGATTTAATAATTAGGAAGCATGTTGGAAAAGGATTACCAGTTGATGGAGCTCTTAATGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTTCCCAGAAGATCTTCCTTTTCTTTCAAGGGCAACTGCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATTCCTGTTATGGTTTATGGGAGAAATATATCTGGGCAAGAGTTTGGAGGAATGTATTGCGTTGTTTTAATTGTGAGATCGATAGTTGTATCGGCTGGTCTTCTTAGGATATTTGGTCGTGAAGTTGCTGAGCTTCCTATTGTTGCAACAAGTAGAGAACATCAGGGCAGGGGTTATTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTGAACGTGCAAAACCTTGTACTCCCTGCAGCCGAGGATGCTGAATCAATTTGGACTAAGAAATTGGGCTTCAGAAAGATGAGTGAAGAACAATTGATGAAGTATATGAGGGAGGTCCAGCTGACGATCTTCAACGGAACATCGATGCTAGAGAAGAGGAATTTTCGAGTGTTTTCTGTGTCTACGAATGAGACCGCCAATTATTTGCCGGAGGCTCCGATTTTGATTCCTGATGGACCATGGAAGCAGATTGGTGGAGGAGTTACTGCTGCGAAGGGGTTCAAAGCTGCGGGGCTCTATGGCGGGTTACGTGCATTGGGAGAGAAACCCGACCTTGCACTCGTTACTTGCGATGTTGATGCCATTTCTGCCGGAGCATTTACAAAGAATGTAGTTGCTGCAGCACCAGTGTTATACTGTAAAAAAGCATTGAACGATTTGGAAACGGTAGGTTATCTTGCATATCGGCTTCAAATTATGTTTAACAAGTTCACTGATTTTCCTCCTTTTATATGGCCATACCAGGCACGTGCAGTGTTAATAAATGCTGGTCAAGCCAATGCCGCCACGATCCTTCAAATAAGGCCAGAGGAAGTTCTAGTTGAATCTACAGGGGTGATTGGTCATAGAATCAAAAAGGATGCACTTTTGAATTCTCTTCCAAAACTAGTCAGATCTCTTTCATCTTCAGTTGAAGGTGCAGCTTCTGCAGCAGTGGCGATAACGACAACCGATCTTGTCAGTAAAAGCGTGGCAATCGAGTCCCAAGTTGGGGGCTCAACCATAAGAATTGGAGGAATGGCGAAAGGTTCGGGAATGATTCACCCGAGTATGGCTACTATGCTCGGTGTTGTAACAACGGATGCTGTGGTTGCTAGTGATGTTTGGAGAAAGATGGTGCAAATTTCTGTTGATCGAAGCTTCAATCAGATTACGGTGGATGGGGATACAAGTACCAACGACACTGTCATTGCTCTGTCGAGTGGCTTGTCGGGGTCTCGTTCTAATATAATTTCGTCACTGAAAAGTCGAGAAGCAGGACAGCTTCAAGAATGCCTTGATGTGGTGATGCAAGGCCTTGCCAAGTCAATAGCCTGGGATGGTGAAGGAGCAACCTGTCTGATTGAGGTTGCAGTGAATGGTGCAAGTTCAGAAGCCGAAGCAGCGAAAATTGCTCGTTCGGTGGCAGGCTCGTCGCTCTCAGCTATATATGGCCGAGATCCAAACTGGGGACGCATAGCAGCAGCTGCCGGGTACGCAGGGGTAGCGTTTGAGCAGAAGAAACTCAAAGTGTCGCTAGGAAACATTCTCCTCATGGACGGAGGAGAACCTCAATCTTTTGACAGGGCTGCGGCTAGTAACTATCTCAGAAGCGCTGGAGAAACCCATGGTACTGTCAAAATTTACATTTCTATAGGTGATGGGCACGAAGAAGGACGGGCATGGGGTTGCGACTTGAGTTACGACTATGTCAAGATAAATGCAGAGTATACTACATAG 3882 44.05 MGEEAAALAAVTNEPLGKESAPSTELKRDHQCLDEDTEPEAFHNKKQAKEVSNEDVRSEVSNPVISPKGNNFQDITSQPEEQKNTNQVERGDLTSACSGNSSSEDISSNGVRCQNDTSRNDVDMCDVDEVSRFVIEIPKHASSTGIRKITFKFSKKKDKNAASMSADKVCSYGNFDKDCKPEPSLVDDACTETSAHSWEGIAESSRYPLGSNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYISTTSEMKLHGIINGGGYMCGCSICNFTTILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSCINVDSFEVWKANFHQNSAIIEVENDDVKVPKLSHPIDRPIPNLSNPVMQQKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQATSKEMAYSVLTVIESRFTNLKQISPSQFEAHAGMAARRQPYRHIYITNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDRCPRAFHTGCLHLQNVPEGVWSCPNCRDKVGSNLKAPSGGSLSFSKPIVFRLTRVVKAPEYEIGGCVVCRYNFSQSCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVAFQNTVLNGAQIIPDSLSDLIIRKHVGKGLPVDGALNDVRWQILSGKSRFPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGRGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQLMKYMREVQLTIFNGTSMLEKRNFRVFSVSTNETANYLPEAPILIPDGPWKQIGGGVTAAKGFKAAGLYGGLRALGEKPDLALVTCDVDAISAGAFTKNVVAAAPVLYCKKALNDLETVGYLAYRLQIMFNKFTDFPPFIWPYQARAVLINAGQANAATILQIRPEEVLVESTGVIGHRIKKDALLNSLPKLVRSLSSSVEGAASAAVAITTTDLVSKSVAIESQVGGSTIRIGGMAKGSGMIHPSMATMLGVVTTDAVVASDVWRKMVQISVDRSFNQITVDGDTSTNDTVIALSSGLSGSRSNIISSLKSREAGQLQECLDVVMQGLAKSIAWDGEGATCLIEVAVNGASSEAEAAKIARSVAGSSLSAIYGRDPNWGRIAAAAGYAGVAFEQKKLKVSLGNILLMDGGEPQSFDRAAASNYLRSAGETHGTVKIYISIGDGHEEGRAWGCDLSYDYVKINAEYTT 1293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 673119 685990 + CmaCh14G001670.1 Cma14g00167 307150

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00167 1293 MobiDBLite consensus disorder prediction 57 118 - -
Cma14g00167 1293 Gene3D - 689 849 - -
Cma14g00167 1293 Gene3D - 878 1162 - -
Cma14g00167 1293 ProSitePatterns Zinc finger PHD-type signature. 495 534 IPR019786 -
Cma14g00167 1293 SUPERFAMILY FYVE/PHD zinc finger 585 635 IPR011011 -
Cma14g00167 1293 Hamap Arginine biosynthesis bifunctional protein ArgJ [argJ]. 875 1293 IPR002813 GO:0004358|GO:0006526
Cma14g00167 1293 SMART PHD_3 573 638 IPR001965 -
Cma14g00167 1293 SMART PHD_3 494 535 IPR001965 -
Cma14g00167 1293 ProSitePatterns Zinc finger PHD-type signature. 574 637 IPR019786 -
Cma14g00167 1293 Gene3D - 1163 1293 IPR042195 -
Cma14g00167 1293 Pfam PHD-finger 494 536 IPR019787 -
Cma14g00167 1293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 487 543 IPR013083 -
Cma14g00167 1293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 573 640 IPR013083 -
Cma14g00167 1293 TIGRFAM ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 981 1293 IPR002813 GO:0004358|GO:0006526
Cma14g00167 1293 SUPERFAMILY DmpA/ArgJ-like 886 1290 IPR016117 -
Cma14g00167 1293 CDD OAT 885 1293 IPR002813 GO:0004358|GO:0006526
Cma14g00167 1293 PANTHER AUTOIMMUNE REGULATOR 35 355 - -
Cma14g00167 1293 PANTHER AUTOIMMUNE REGULATOR 368 847 - -
Cma14g00167 1293 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 732 826 IPR016181 -
Cma14g00167 1293 Pfam Tify domain binding domain 442 477 IPR032308 -
Cma14g00167 1293 Pfam Tify domain binding domain 258 312 IPR032308 -
Cma14g00167 1293 Pfam ArgJ family 890 1293 IPR002813 GO:0004358|GO:0006526
Cma14g00167 1293 MobiDBLite consensus disorder prediction 21 56 - -
Cma14g00167 1293 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 368 847 - -
Cma14g00167 1293 MobiDBLite consensus disorder prediction 1 118 - -
Cma14g00167 1293 ProSiteProfiles Zinc finger PHD-type profile. 571 640 IPR019787 -
Cma14g00167 1293 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 35 355 - -
Cma14g00167 1293 MobiDBLite consensus disorder prediction 365 392 - -
Cma14g00167 1293 ProSiteProfiles Zinc finger PHD-type profile. 492 537 IPR019787 -
Cma14g00167 1293 SUPERFAMILY FYVE/PHD zinc finger 490 538 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00167 - - - cmax:111481523 1608.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00316 Cma-Chr6:1490210 Cma14g00167 Cma-Chr14:673119 0 dispersed
Cma06g00412 Cma-Chr6:1905877 Cma14g00167 Cma-Chr14:673119 2.36E-15 dispersed
Cma14g00167 Cma-Chr14:673119 Cma20g00533 Cma-Chr20:2550542 4.76E-149 dispersed
Cma14g00167 Cma-Chr14:673119 Cma20g00425 Cma-Chr20:2015300 1.52E-43 wgd
Cma14g00167 Cma-Chr14:673119 Cma04g00226 Cma-Chr4:1093147 2.50E-43 wgd
Cma14g00167 Cma-Chr14:673119 Cma04g01200 Cma-Chr4:6114568 6.88E-43 wgd
Cma14g00167 Cma-Chr14:673119 Cma06g00312 Cma-Chr6:1478464 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g692 . . . . . Bpe03g01047 . Bma10g00287 . Cmo14g00155 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1325 Cone19ag1310 . . . Cme04g02601 . . . Bda05g00977 . . . . . . . . Cma14g00167 . Car14g00140 Cpe03g00133 . Bhi11g02229 Tan08g1980 . Lac10g3087 . . . Cla10g01989 Cam10g2057 Cec10g2098 Cco10g2080 Clacu10g2062 Cmu10g2810 Cre10g2203 . Csa03g03201 Chy04g02129 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma06g00316 . 18 818 PHD Transcription Factor Family AT3G53680 53.2 3.6e-244 842.0
Cma14g00167 . 25 857 PHD Transcription Factor Family AT3G53680 52.1 2.3e-238 822.8
Cma04g00226 CST,ECH 438 564 PHD Transcription Factor Family AT3G53680 55.1 6.0e-37 153.7
Cma20g00425 . 312 450 PHD Transcription Factor Family AT3G53680 51.8 6.0e-37 153.7
Cma04g01200 CST,ECH 439 565 PHD Transcription Factor Family AT3G53680 54.3 3.0e-36 151.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005462 1 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36167 PF01960 ArgJ 1.60E-116 CL0635 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g00167 Cma_Chr14 FPKM 12.879024 15.39135 27.964231 28.455511 22.449232 21.959782 22.411398 38.850311 36.477005 37.744049