Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma14g00167 | ATGGGAGAAGAAGCAGCTGCTTTGGCTGCAGTTACAAATGAGCCGTTGGGGAAAGAGAGCGCTCCGAGTACCGAATTGAAGCGGGACCATCAGTGTCTTGATGAAGATACGGAGCCCGAGGCTTTTCACAACAAGAAGCAGGCTAAAGAAGTGTCGAATGAAGATGTTCGTTCAGAAGTTTCGAATCCCGTAATTTCTCCGAAAGGGAATAATTTCCAAGATATTACCAGCCAACCTGAGGAGCAAAAAAATACCAACCAAGTTGAGCGTGGGGACCTTACCTCGGCTTGTTCGGGTAATTCAAGCTCGGAGGACATCTCTAGCAATGGAGTTCGTTGCCAGAATGACACGTCTCGAAATGACGTTGATATGTGTGATGTTGATGAGGTCTCTCGGTTTGTGATTGAAATACCCAAGCATGCTAGTTCAACTGGAATTAGAAAAATTACGTTCAAGTTCAGCAAAAAAAAGGACAAAAATGCCGCATCCATGTCAGCAGACAAAGTTTGTTCATATGGGAACTTCGACAAGGACTGTAAACCAGAACCTTCACTGGTGGACGATGCTTGTACGGAGACATCTGCACATAGCTGGGAAGGCATTGCTGAGAGCAGCAGGTATCCTTTAGGTTCAAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCAAACAATTACCCGTCAAATGTTAAAAAGCTACTGTCGACTGGTATACTTGACGGAGCTCGAGTCAAGTATATATCTACGACAAGCGAGATGAAGCTACATGGTATTATAAATGGCGGAGGTTATATGTGCGGATGTTCAATATGCAATTTTACAACTATCCTCAGTGCTTATGAGTTTGAGCAGCACGCTGGTTTCAAGACTAGACATCCAAATAATCATATATACCTGGAGAATGGGAGGCCAATTTATAGTGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTAAGGAAGTAGCGGGTTCATGTATTAACGTGGATTCATTTGAGGTTTGGAAAGCAAATTTCCACCAGAACAGTGCAATTATTGAAGTGGAAAATGATGATGTGAAGGTTCCTAAGTTGTCACATCCCATTGACAGGCCAATCCCTAATTTATCCAACCCAGTTATGCAACAGAAGAAAACGGCAGAAAAAGGCACAAAAAGAAGGGATAATGATCTTCACAGGCTACTTTTCATGCCAAATGGGCTTCCAGATGGGGCTGAGCTGGCATACTTTGTTAAAGGACAGGCTACAAGCAAGGAAATGGCATACTCTGTACTCACTGTAATCGAGAGCCGTTTCACAAATTTGAAACAGATCAGCCCTTCACAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAGCCCTACCGCCACATTTATATTACAAATGGACTTACGCTTCATGATATAGCCATTTCCTTGGCTAGTGGGCAAAAACTTACCACAGGAGATAGTGATGATATGTGCGCTGCATGTGGTAATGGAGGGGATTTGATTTTCTGTGATCGCTGCCCTCGAGCTTTCCATACAGGCTGCCTGCATCTACAGAATGTTCCTGAAGGAGTTTGGTCTTGCCCAAACTGTAGAGATAAAGTGGGTTCCAATTTGAAGGCTCCTTCCGGAGGTTCTTTGAGTTTTTCAAAACCAATTGTATTTAGGTTGACACGAGTTGTTAAAGCACCTGAATATGAAATTGGTGGTTGTGTTGTTTGCAGATACAACTTCTCACAATCTTGTAGGCGACATGATTTCAGTGCTGCTAAATTTGATGATCGAACTGTACTTCTTTGTGATCAATGTGAAAGAGAATTCCATGTAGGCTGTCTGCGGGATAGTGGATTATGTGATCTGAAGGAACTTCCCAAGGACAAGTGGTTCTGCTGTGACGAGTGCAGTAATATCCATGTGGCTTTTCAGAATACAGTTTTGAACGGGGCACAGATCATTCCAGATTCCTTATCAGATTTAATAATTAGGAAGCATGTTGGAAAAGGATTACCAGTTGATGGAGCTCTTAATGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTTCCCAGAAGATCTTCCTTTTCTTTCAAGGGCAACTGCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATTCCTGTTATGGTTTATGGGAGAAATATATCTGGGCAAGAGTTTGGAGGAATGTATTGCGTTGTTTTAATTGTGAGATCGATAGTTGTATCGGCTGGTCTTCTTAGGATATTTGGTCGTGAAGTTGCTGAGCTTCCTATTGTTGCAACAAGTAGAGAACATCAGGGCAGGGGTTATTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTGAACGTGCAAAACCTTGTACTCCCTGCAGCCGAGGATGCTGAATCAATTTGGACTAAGAAATTGGGCTTCAGAAAGATGAGTGAAGAACAATTGATGAAGTATATGAGGGAGGTCCAGCTGACGATCTTCAACGGAACATCGATGCTAGAGAAGAGGAATTTTCGAGTGTTTTCTGTGTCTACGAATGAGACCGCCAATTATTTGCCGGAGGCTCCGATTTTGATTCCTGATGGACCATGGAAGCAGATTGGTGGAGGAGTTACTGCTGCGAAGGGGTTCAAAGCTGCGGGGCTCTATGGCGGGTTACGTGCATTGGGAGAGAAACCCGACCTTGCACTCGTTACTTGCGATGTTGATGCCATTTCTGCCGGAGCATTTACAAAGAATGTAGTTGCTGCAGCACCAGTGTTATACTGTAAAAAAGCATTGAACGATTTGGAAACGGTAGGTTATCTTGCATATCGGCTTCAAATTATGTTTAACAAGTTCACTGATTTTCCTCCTTTTATATGGCCATACCAGGCACGTGCAGTGTTAATAAATGCTGGTCAAGCCAATGCCGCCACGATCCTTCAAATAAGGCCAGAGGAAGTTCTAGTTGAATCTACAGGGGTGATTGGTCATAGAATCAAAAAGGATGCACTTTTGAATTCTCTTCCAAAACTAGTCAGATCTCTTTCATCTTCAGTTGAAGGTGCAGCTTCTGCAGCAGTGGCGATAACGACAACCGATCTTGTCAGTAAAAGCGTGGCAATCGAGTCCCAAGTTGGGGGCTCAACCATAAGAATTGGAGGAATGGCGAAAGGTTCGGGAATGATTCACCCGAGTATGGCTACTATGCTCGGTGTTGTAACAACGGATGCTGTGGTTGCTAGTGATGTTTGGAGAAAGATGGTGCAAATTTCTGTTGATCGAAGCTTCAATCAGATTACGGTGGATGGGGATACAAGTACCAACGACACTGTCATTGCTCTGTCGAGTGGCTTGTCGGGGTCTCGTTCTAATATAATTTCGTCACTGAAAAGTCGAGAAGCAGGACAGCTTCAAGAATGCCTTGATGTGGTGATGCAAGGCCTTGCCAAGTCAATAGCCTGGGATGGTGAAGGAGCAACCTGTCTGATTGAGGTTGCAGTGAATGGTGCAAGTTCAGAAGCCGAAGCAGCGAAAATTGCTCGTTCGGTGGCAGGCTCGTCGCTCTCAGCTATATATGGCCGAGATCCAAACTGGGGACGCATAGCAGCAGCTGCCGGGTACGCAGGGGTAGCGTTTGAGCAGAAGAAACTCAAAGTGTCGCTAGGAAACATTCTCCTCATGGACGGAGGAGAACCTCAATCTTTTGACAGGGCTGCGGCTAGTAACTATCTCAGAAGCGCTGGAGAAACCCATGGTACTGTCAAAATTTACATTTCTATAGGTGATGGGCACGAAGAAGGACGGGCATGGGGTTGCGACTTGAGTTACGACTATGTCAAGATAAATGCAGAGTATACTACATAG | 3882 | 44.05 | MGEEAAALAAVTNEPLGKESAPSTELKRDHQCLDEDTEPEAFHNKKQAKEVSNEDVRSEVSNPVISPKGNNFQDITSQPEEQKNTNQVERGDLTSACSGNSSSEDISSNGVRCQNDTSRNDVDMCDVDEVSRFVIEIPKHASSTGIRKITFKFSKKKDKNAASMSADKVCSYGNFDKDCKPEPSLVDDACTETSAHSWEGIAESSRYPLGSNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYISTTSEMKLHGIINGGGYMCGCSICNFTTILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSCINVDSFEVWKANFHQNSAIIEVENDDVKVPKLSHPIDRPIPNLSNPVMQQKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQATSKEMAYSVLTVIESRFTNLKQISPSQFEAHAGMAARRQPYRHIYITNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDRCPRAFHTGCLHLQNVPEGVWSCPNCRDKVGSNLKAPSGGSLSFSKPIVFRLTRVVKAPEYEIGGCVVCRYNFSQSCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVAFQNTVLNGAQIIPDSLSDLIIRKHVGKGLPVDGALNDVRWQILSGKSRFPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGRGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQLMKYMREVQLTIFNGTSMLEKRNFRVFSVSTNETANYLPEAPILIPDGPWKQIGGGVTAAKGFKAAGLYGGLRALGEKPDLALVTCDVDAISAGAFTKNVVAAAPVLYCKKALNDLETVGYLAYRLQIMFNKFTDFPPFIWPYQARAVLINAGQANAATILQIRPEEVLVESTGVIGHRIKKDALLNSLPKLVRSLSSSVEGAASAAVAITTTDLVSKSVAIESQVGGSTIRIGGMAKGSGMIHPSMATMLGVVTTDAVVASDVWRKMVQISVDRSFNQITVDGDTSTNDTVIALSSGLSGSRSNIISSLKSREAGQLQECLDVVMQGLAKSIAWDGEGATCLIEVAVNGASSEAEAAKIARSVAGSSLSAIYGRDPNWGRIAAAAGYAGVAFEQKKLKVSLGNILLMDGGEPQSFDRAAASNYLRSAGETHGTVKIYISIGDGHEEGRAWGCDLSYDYVKINAEYTT | 1293 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 673119 | 685990 | + | CmaCh14G001670.1 | Cma14g00167 | 307150 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma14g00167 | 1293 | MobiDBLite | consensus disorder prediction | 57 | 118 | - | - | |
| Cma14g00167 | 1293 | Gene3D | - | 689 | 849 | - | - | |
| Cma14g00167 | 1293 | Gene3D | - | 878 | 1162 | - | - | |
| Cma14g00167 | 1293 | ProSitePatterns | Zinc finger PHD-type signature. | 495 | 534 | IPR019786 | - | |
| Cma14g00167 | 1293 | SUPERFAMILY | FYVE/PHD zinc finger | 585 | 635 | IPR011011 | - | |
| Cma14g00167 | 1293 | Hamap | Arginine biosynthesis bifunctional protein ArgJ [argJ]. | 875 | 1293 | IPR002813 | GO:0004358|GO:0006526 | |
| Cma14g00167 | 1293 | SMART | PHD_3 | 573 | 638 | IPR001965 | - | |
| Cma14g00167 | 1293 | SMART | PHD_3 | 494 | 535 | IPR001965 | - | |
| Cma14g00167 | 1293 | ProSitePatterns | Zinc finger PHD-type signature. | 574 | 637 | IPR019786 | - | |
| Cma14g00167 | 1293 | Gene3D | - | 1163 | 1293 | IPR042195 | - | |
| Cma14g00167 | 1293 | Pfam | PHD-finger | 494 | 536 | IPR019787 | - | |
| Cma14g00167 | 1293 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 487 | 543 | IPR013083 | - | |
| Cma14g00167 | 1293 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 573 | 640 | IPR013083 | - | |
| Cma14g00167 | 1293 | TIGRFAM | ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase | 981 | 1293 | IPR002813 | GO:0004358|GO:0006526 | |
| Cma14g00167 | 1293 | SUPERFAMILY | DmpA/ArgJ-like | 886 | 1290 | IPR016117 | - | |
| Cma14g00167 | 1293 | CDD | OAT | 885 | 1293 | IPR002813 | GO:0004358|GO:0006526 | |
| Cma14g00167 | 1293 | PANTHER | AUTOIMMUNE REGULATOR | 35 | 355 | - | - | |
| Cma14g00167 | 1293 | PANTHER | AUTOIMMUNE REGULATOR | 368 | 847 | - | - | |
| Cma14g00167 | 1293 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 732 | 826 | IPR016181 | - | |
| Cma14g00167 | 1293 | Pfam | Tify domain binding domain | 442 | 477 | IPR032308 | - | |
| Cma14g00167 | 1293 | Pfam | Tify domain binding domain | 258 | 312 | IPR032308 | - | |
| Cma14g00167 | 1293 | Pfam | ArgJ family | 890 | 1293 | IPR002813 | GO:0004358|GO:0006526 | |
| Cma14g00167 | 1293 | MobiDBLite | consensus disorder prediction | 21 | 56 | - | - | |
| Cma14g00167 | 1293 | PANTHER | ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN | 368 | 847 | - | - | |
| Cma14g00167 | 1293 | MobiDBLite | consensus disorder prediction | 1 | 118 | - | - | |
| Cma14g00167 | 1293 | ProSiteProfiles | Zinc finger PHD-type profile. | 571 | 640 | IPR019787 | - | |
| Cma14g00167 | 1293 | PANTHER | ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN | 35 | 355 | - | - | |
| Cma14g00167 | 1293 | MobiDBLite | consensus disorder prediction | 365 | 392 | - | - | |
| Cma14g00167 | 1293 | ProSiteProfiles | Zinc finger PHD-type profile. | 492 | 537 | IPR019787 | - | |
| Cma14g00167 | 1293 | SUPERFAMILY | FYVE/PHD zinc finger | 490 | 538 | IPR011011 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma06g00316 | Cma-Chr6:1490210 | Cma14g00167 | Cma-Chr14:673119 | 0 | dispersed | |
| Cma06g00412 | Cma-Chr6:1905877 | Cma14g00167 | Cma-Chr14:673119 | 2.36E-15 | dispersed | |
| Cma14g00167 | Cma-Chr14:673119 | Cma20g00533 | Cma-Chr20:2550542 | 4.76E-149 | dispersed | |
| Cma14g00167 | Cma-Chr14:673119 | Cma20g00425 | Cma-Chr20:2015300 | 1.52E-43 | wgd | |
| Cma14g00167 | Cma-Chr14:673119 | Cma04g00226 | Cma-Chr4:1093147 | 2.50E-43 | wgd | |
| Cma14g00167 | Cma-Chr14:673119 | Cma04g01200 | Cma-Chr4:6114568 | 6.88E-43 | wgd | |
| Cma14g00167 | Cma-Chr14:673119 | Cma06g00312 | Cma-Chr6:1478464 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 36167 | PF01960 | ArgJ | 1.60E-116 | CL0635 | Cma | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma14g00167 | - | - | cmax:111481523 | 1608.96 |