Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma14g00183 | ATGGACAATAAAGCGGCGGAGAGAGTTGTTGTTGCCAGACCGGTTGCGTCGAGGCCGACATGTTCCAGTTTTAAGTCATTCTCTGATATCCTTGCGTGTGCCTTCAATACTTCTCCACCTAATATGTCATCAGAAACAACCAAGGTTGCTGCCATAAGACCAAAGACAGTGAGGTTTAAGCTGAAGGACAATCCTGCTCCATCACCCATGGCCAAAATTTCGGAAACCGCCCCTCGAACGATCTCTTGTAGTTCATCTGATAATCTTGCCATATCAGACAGCAAAACCACTGTTTTATTCAAACCTTTGGCGAAGCATGTATCGAAACAGACCGTCTCTCAGCTGTCACACATTGGGAACACCAATTTGCAAAACTGTTTACCACATCCACCTGATAAGGACAGTATTCAATGTCCAAATCAAGGTAAAGACAATGTCCAATCTGCACTGACCTCAAATCTTCCCCAGAACATCACATCCACCGTTGAAAACAGCCAATCTATTGAAAGCTCAAGAGTGACATTGAATTATAGCAAAGAGGATCCAACATTGCTTCATTCTCAAGTAAGTTGTGCTCAGCCTTCTTATGACGGATATAATTGGAGGAAATATGGACAAAAGAAAGTTAAGGGAAGCAAGTATCCGCGGAGTTATTACAAGTGCACACATCCAAGTTGTCCTGTCAAGAAAAAGGTTGAGAGATCATTGGATGGGAAGATTGCTGAAATTGTTTACAAAGGTGAGCACGACCACCCAAAGCCTCAGCCTCTAAAGCTCAACTCATCAGGGACACCAGGGGAAGGTTCGATATCAGATGGAACGGTACGAGATACTAATCCGAAGCTATGGCTTTATTACCTCAACGGACAAATAGAAGGTAGTGAAAGTCAGCTCGAGAATCACATCGAAAAAACTTGTCAAGGCACAGTTACATTACCCTTTGATCCAGTTGTAGTTAGAGAAGTCCATACTGGATGTAGAATCTCTGATAATTCATGCGGTCTAAGTGTAGAATGTGAAGAAGGAAGCAAGGGACTTGAATCCACAGGTGATAAATTGCGAAGTAAAAGAAGGGGTGGCAAAAATCCAACAAATGAAGCTGATATATCAATTGAAGGTGTTTATGAGCACCATGCTATGGCTCGATGCTCCGCTGATATTGAGATTTCTGGCAAAGGCATTCGCTGGAGAAAATATGGGCAGAAAGTTGTAAAGGGAAATCTATACCCTCGAAGTTACTACAGATGTACCGGTCTCAAATGCAAAGCGCGCAAGTACGTCGAACGAGCGTCGGAGGTTCCAGATTCCTTTATCACTACTTATGAAGGAAAACACAATCATGATATCTCACTTGGAAATGCAAATCATAGTGAAGGCAGCCAGCATGTGGAGAGGAAACATCGAATCATTTTGAAGATATCGTCGTCTATTGCTCATCCATATCGGTACGTCGTTTCGTCTTCAACATCCATAGTTTCGACGTGTATGAACTTTTGGATACTTTTAGGCCATCTGTTTTCCTCTTCTTGGTTGGATGCTGCTGTGGAAGTTCATCAAAGAGTGCGCAAGGAGATTGAATTAAGCATGATTTGGATTCCTTGTTCTGGAAATTCAAATAGGAAAGTCAGGTCCAAGAAATTAAAGAAGTTGGAATCTCAGAAGAGTCGAGTTGATCCAATCAAAGCTGCTTCAGGGAAACTAAAGACAAGTTCCTCCTTCAGTGAAGCCTCGAATGGTGGAGGATCTGATCCTATCAAGGCACAGATATTTTCATTCCGGGAGTTGGCAGCTGCTACCAGGAATTTTAGGGCAGACTGTCTTTTGGGCGAGGGAGGTTTTGGTCGAGTTTACAAAGGAAATTTGGAAAGCATCAATCAGGTTGTGGCAATCAAACAACTTGACCGCAATGGGTTGCAAGGGAACAGAGAATTTCTCGTTGAAGTGTTGATGTTAAGCCTACTTCATCACCCAAATCTAGTTAATCTGATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTTATATATGAATATATGCGTCTAGGAGCTTTAGATGATCATTTACATGACATTTCACCTGGTACAAAAGTACTAGATTGGAATACAAGAATGAAAATAGCAACTGGGGCAGCACGAGGATTGGAATATTTGCACGACAAAGCGAGCCCGCCAGTTATTTATCGAGATTTAAAAAGTTCCAACATTCTGCTTGATAAAGGTTATCATCCCAAGCTGTCTGATTTTGGATTGGCCAAACTTGGGCCTGTTGGGGATAATACACATGTATCTACCAGAGTTATGGGCACTTACGGATATTGTGCTCCTGAATATGCAATGACTGGTCAGTTAACTCTCAAGTCAGATGTTTATAGCTTTGGTGTTGTCCTTCTAGAAATCATAACAGGCAGGAAAGCAATTGATGATTCAAGAGCAGCAGGGGAGCAAAATCTGGTTTCATGGGCAAGACCGTTATTTAAAGACCGTATGAGATTTGCGCAAATGGCAGATCCAATGCTTAGAGGCCAATACCCTTCAAGGGGTTTGTATCAGGCTCTTGCAGTTGCAGCAATGTGTGTTCAAGAGCAGCCAAATATGCGACCTGTGATCGCCGATGTTGTCACAGCTTTATCTTATCTAGCTTCCCAAAGATACGACCCGGGTTCGAACATACCCCACAGCTCTCCTGGATCTGCCAGTACTCCTCCAAGAACCAACAGAGATTCTGATAGGAAGCTTAATGGCGGTAGAAGATACGACAGGAATCCTACTAGACGACTATAA | 2781 | 42.75 | MDNKAAERVVVARPVASRPTCSSFKSFSDILACAFNTSPPNMSSETTKVAAIRPKTVRFKLKDNPAPSPMAKISETAPRTISCSSSDNLAISDSKTTVLFKPLAKHVSKQTVSQLSHIGNTNLQNCLPHPPDKDSIQCPNQGKDNVQSALTSNLPQNITSTVENSQSIESSRVTLNYSKEDPTLLHSQVSCAQPSYDGYNWRKYGQKKVKGSKYPRSYYKCTHPSCPVKKKVERSLDGKIAEIVYKGEHDHPKPQPLKLNSSGTPGEGSISDGTVRDTNPKLWLYYLNGQIEGSESQLENHIEKTCQGTVTLPFDPVVVREVHTGCRISDNSCGLSVECEEGSKGLESTGDKLRSKRRGGKNPTNEADISIEGVYEHHAMARCSADIEISGKGIRWRKYGQKVVKGNLYPRSYYRCTGLKCKARKYVERASEVPDSFITTYEGKHNHDISLGNANHSEGSQHVERKHRIILKISSSIAHPYRYVVSSSTSIVSTCMNFWILLGHLFSSSWLDAAVEVHQRVRKEIELSMIWIPCSGNSNRKVRSKKLKKLESQKSRVDPIKAASGKLKTSSSFSEASNGGGSDPIKAQIFSFRELAAATRNFRADCLLGEGGFGRVYKGNLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLIYEYMRLGALDDHLHDISPGTKVLDWNTRMKIATGAARGLEYLHDKASPPVIYRDLKSSNILLDKGYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDDSRAAGEQNLVSWARPLFKDRMRFAQMADPMLRGQYPSRGLYQALAVAAMCVQEQPNMRPVIADVVTALSYLASQRYDPGSNIPHSSPGSASTPPRTNRDSDRKLNGGRRYDRNPTRRL | 926 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 761708 | 768956 | - | CmaCh14G001830.1 | Cma14g00183 | 307166 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma14g00183 | 926 | ProSiteProfiles | WRKY domain profile. | 385 | 450 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Cma14g00183 | 926 | MobiDBLite | consensus disorder prediction | 543 | 563 | - | - | |
| Cma14g00183 | 926 | Pfam | Protein tyrosine and serine/threonine kinase | 607 | 875 | IPR001245 | GO:0004672|GO:0006468 | |
| Cma14g00183 | 926 | MobiDBLite | consensus disorder prediction | 886 | 903 | - | - | |
| Cma14g00183 | 926 | SMART | WRKY_cls | 390 | 449 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Cma14g00183 | 926 | SMART | WRKY_cls | 195 | 253 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Cma14g00183 | 926 | Gene3D | Transferase(Phosphotransferase) domain 1 | 679 | 889 | - | - | |
| Cma14g00183 | 926 | MobiDBLite | consensus disorder prediction | 246 | 274 | - | - | |
| Cma14g00183 | 926 | ProSitePatterns | Protein kinases ATP-binding region signature. | 608 | 631 | IPR017441 | GO:0005524 | |
| Cma14g00183 | 926 | ProSiteProfiles | WRKY domain profile. | 197 | 254 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Cma14g00183 | 926 | Gene3D | WRKY domain | 183 | 255 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
| Cma14g00183 | 926 | Gene3D | WRKY domain | 376 | 450 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
| Cma14g00183 | 926 | MobiDBLite | consensus disorder prediction | 344 | 363 | - | - | |
| Cma14g00183 | 926 | MobiDBLite | consensus disorder prediction | 257 | 274 | - | - | |
| Cma14g00183 | 926 | Pfam | WRKY DNA -binding domain | 197 | 252 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Cma14g00183 | 926 | Pfam | WRKY DNA -binding domain | 393 | 447 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Cma14g00183 | 926 | SMART | serkin_6 | 602 | 879 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cma14g00183 | 926 | MobiDBLite | consensus disorder prediction | 904 | 926 | - | - | |
| Cma14g00183 | 926 | PANTHER | OS07G0668900 PROTEIN | 529 | 914 | - | - | |
| Cma14g00183 | 926 | SUPERFAMILY | WRKY DNA-binding domain | 193 | 254 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
| Cma14g00183 | 926 | MobiDBLite | consensus disorder prediction | 886 | 926 | - | - | |
| Cma14g00183 | 926 | PANTHER | SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED | 529 | 914 | - | - | |
| Cma14g00183 | 926 | ProSiteProfiles | Protein kinase domain profile. | 602 | 879 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cma14g00183 | 926 | SUPERFAMILY | WRKY DNA-binding domain | 386 | 449 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
| Cma14g00183 | 926 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 725 | 737 | IPR008271 | GO:0004672|GO:0006468 | |
| Cma14g00183 | 926 | CDD | STKc_IRAK | 608 | 876 | - | - | |
| Cma14g00183 | 926 | Gene3D | Phosphorylase Kinase; domain 1 | 579 | 678 | - | - | |
| Cma14g00183 | 926 | MobiDBLite | consensus disorder prediction | 342 | 366 | - | - | |
| Cma14g00183 | 926 | PIRSF | SRK | 66 | 204 | IPR024171 | GO:0004674 | |
| Cma14g00183 | 926 | PIRSF | SRK | 415 | 918 | IPR024171 | GO:0004674 | |
| Cma14g00183 | 926 | SUPERFAMILY | Protein kinase-like (PK-like) | 585 | 876 | IPR011009 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma14g00183 | Cma-Chr14:761708 | Cma14g01637 | Cma-Chr14:12259054 | 0 | dispersed | |
| Cma13g00169 | Cma-Chr13:1291866 | Cma14g00183 | Cma-Chr14:761708 | 5.19E-180 | wgd | |
| Cma14g00183 | Cma-Chr14:761708 | Cma20g00451 | Cma-Chr20:2135318 | 3.65E-144 | wgd | |
| Cma14g00183 | Cma-Chr14:761708 | Cma04g00257 | Cma-Chr4:1266414 | 0 | wgd | |
| Cma14g00183 | Cma-Chr14:761708 | Cma04g01234 | Cma-Chr4:6306340 | 0 | wgd | |
| Cma14g00183 | Cma-Chr14:761708 | Cma06g00343 | Cma-Chr6:1593759 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 36169 | PF07714 | PK_Tyr_Ser-Thr | 8.70E-45 | CL0016 | Cma | TF | |
| 69051 | PF07714 | PK_Tyr_Ser-Thr | 8.70E-45 | CL0016 | Cma | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma14g00183 | - | - | bhj:120090000 | 743.806 |