Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00185 ATGAACTCCAACGCTTCGAATCCACATACTTCTATGGCGACTTCCTCTGCTGCAGATTCTTCTGGCAAGAAGGTTCGTAAGCCCTACACCATCACCAAGTCCAGAGAGAGTTGGACCGAAGAGGAGCACGATAAATTCCTCGAAGCTCTACAACTACGGAGCTTCATCTTCCTTCTAGATTGTAGTTCTCTTGATTCTGCTTTGTTGTCGAGACTGTGGTTTGATCGTGACTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAGACAGTTATTCAGTCGATGCTGCAGATTCGAAGTCACGCCCAAAAGTATTTTTTGAAAGTCCAAAAAAATGGAACAATAGCACATGTACCTCCACCTCGCCCAAAACGCAAGGCTTCACATCCTTATCCACAAAAGGCATCCAAAAATGTTTTGGTACCGATGCAAGCGTCAATGGCTTATCCTTCTTCAGTTAATACCCTAGCACTTGGATATTGTCCATGGGAGGATGCATCGATAATGATTAACCCTTCATCCTGCAAAGTCACGCATCCACAAGATGAATTTACAAATCTTCACAGATCTGAAACTGAAAATGCGTCAGAAGGGACACCAATGATCAATAGCAATAGCCTCAATGTTATTGGAAGCCCTGATACGGGAAAGCAGGGAAAACAAGCTCCTATGCTTCATGGCTTACCAGATTTTGCAGAAGTTTATGGCTTCATTGGGAGCGTTTTTGACCCAGAAATTGCACTTCCAATCATGCTGATCATTAAAGACTCCGGATTAATGCATGTTAAAACACCATTCTGGAAATTATGCAAGCATTTGCTCAAAGCTACAATTGGTGATATGCAGGTTTTGTTGTTGATGAGAAACCTCACTTTTAACTTGTCCAGCCCCGACTTTGAACCACTTCTCTTATCTACTCTGCCTATTACTTGTCGAAGCCAGAGCGTTGGAAAGCCCCAACAATGGCAGCCGCCAGCCAGGGCTGTTAGAGAAGATTGTATCAAAAATTGGTCTCCACTGATTCTTTTGAGGCCTTTATGGATCCTCATCTTGGCACCTTATCAAGGCTCATATTTCACTGGTTTGGCCTATAACCAAATGTATATTTTTAGAAAAGCCCTAGTTCTGCGCATTCACTTGCCTGAAATGGCCGCCGCCGCTCGTCCTTTGGTCGCCGTCCAGTCTCTCGAAGGCGACATGGCAACCGATGCTGCCCCGACGGTGCCATTGCCCGATGTCATGAAAGCCTCTATCCGACCGGATATCGTCAACTTCGTCCACGCCAACATTTCTAAGAACAGACGCCAACCCTATGCCGTAAGCAAGCGCGCAGGTCATCAAACTTCCGCAGAGTCATGGGGTACAGGTCGAGCCGTTTCTCGTATCCCTCGTGTTCCTGGTGGCGGTACTCACCGTGCTGGTCAAGGAGCTTTCGGAAACATGTGTCGTGGAGGTCGTATGTTTGCTCCGACGAAGATCTGGCGCCGATGGCACCGAAAGATTAACGTGAATCAAAAAAGGTATGCTGTTGTTTCCGCCATTGCTGCTTCTGCAGTTCCTTCTCTGGTTTTGGCTCGTGGCCACAGAATCGAGTCTGTTCCGGAATTGCCGCTTGTGATTAGCGACTCCGCCGAAGGAATCGAGAAAACCTCTTCTGCGATTAAGGCTTTGAAGCAGATCGGTGCATTGCCTGATGCGGAGAAGGCGAAGGACAGTCACGCCATTCGCCCTGGTAAGGGTAAGATGAGGAACCGTCGCTATATTTCTCGTAAGGGTCCGTTGATAGTATATGGTACTGAAGGTGCTAAGCTTGTCAAGGCCTTTCGCAACATTCCTGGCATTGATATTGTGAATGTTGAGAGGCTGAATCTTTTGAAGCTCGCACCCGGAGGTCATCTTGGAAGATTCGTTATCTGGACGAAAACTGCTTTTGAGAAGCTTGATTCCATTTATGGATCGTTTGAGAAGTCTTCTGAGAAGAAGAAGGGTTACGTGCTTCCGAGGGCCAAAATGGTCAATGCTGATTTGTCTAGGATCATCAATTCCGACGAGGTTCAATCTGTCGTTAAACCCATCAAGAAGGATGTGAAGAGACCTTCATTGAAGAAGAACCCACTCAAGAACCTTAACGCCATGTTGAAGCTTAACCCATATGCTAAGACTGCAAGGAGAATGTCTTTATTGGCTGAGGCACAGCGCGTAAAAGCCAAGCAGGAAAAGCTTGACAAGAAGCGGAACATCATCCCGAAGGTATTATCTCTTGAATTTGGCTTTCTGGATTCTGAGTTTTTGATTGCTATGTACTTGATTGATTTTTTGGTGGTTCTTCTCACGTGTAAATTGGAGGAAGCTACAGCAGTAAAGGCAGCAGGCAAAGCATGGTACCAAACAATGATTTCAGATAGTGATTACACCGAGTTCGAGAATTTCTCCAAGTGGCTTGATAAATCTTGTATTGGCTCTAGGCATCAATGGTTTAGTTGGTTGATTTTGCCTTCTATTAAAAAATGTTGTTATTTATTAATTAAAAAACACATTTTTTTAGTTTCCAATTGGCATTGGTTTGTCACATTTAAGTACACTATTTTTGACTTTGAGATTAATTGTAATGGTTGTACTAAATTAAAAGAAAGAGAGGAAGAAGAAGTGAGTCCCCCACTTCTCCCTTTTTCTCCCATCCGCCATGGAAATCGAGCTCCACCTCCAATAGAACAACGGCTTCTCCCACTTTCTCTCTCCCTTTCTCTCTCCTCTGCCCCTCACAATCATACTAAAACAGTTATCATTCTCTTTACTGAACGTGGAGCTTCAAACCCAATGCTGGATCTTAACCTCCAAGTTGTTTCCTCTGATTCGGTTGAGATGGTTACTGAGAGGCTTTTCCAGTTTCCGCCAATTAGAATGGAAAGCGCCGGTAGCTTTAACGGCGATCTTTCTGCCAGCACTACCGGCGACGAGGACTCATCTTCCAACGCTGATGAAGCTTTCCCGTTCGCCTTCGGTAAAGACTGCGCGGTTCAGGAAAACTTAGCGGCCAAGTCACTCTGTATTTCCGATAACCACCGCGATCAGACGATGGAGCTTTTTCCATTAACAGGCGGGTTATCTTCTGGTTCGAGTTCTCAGAAGCAGTGGCTGGAGGTTTCTCCGCCGGAATTTCATTGTTGGAGCGGAGCGCCGGAGCGGAGAATAACAGCACCGCCGGCGCAACAACAGCATCAGCCGATGAGGAAGAATCGGCGAGGTCCAAGGTCTCGAAGTTCGCAGTATCGTGGCGTTACCTTTTATCGAAGAACAGGAAGATGGGAATCGCATATTTGGGACTGCGGGAAACAAGTTTATCTGGGTGGTTTCGATACTGCACACGCGGCTGCTAGGGCGTATGATCGGGCGGCGATCAAGTTTCGGGGGGTCGATGCAGATATCAATTTCAATGTCAGTGATTATGATGAAGATATTAAGCAGGTGGGATTGGCTAAGTTAATACTCATTACTGTCAGAACTTCAAACTCTTTCTCTAACGCCATTGATGAAGAGCTTTACTCTTGGCTGCCATTAATGTCCCAGATGATTAATTTTACCAAGGAAGAGTTTGTTCATATTCTTCGCCGCCATAGCACTGGATTTTCGAGGGGGAGCTCCAAGTACAGAGGAGTCACTCTGCATAAATGTGGGCGATGGGAAGCTCGGATGGGTCAGTTCTTGGGCAAGAAGTACATATATCTTGGTCTCTTTGATAGTGAGATTGAGGCTGCAAGAGCATATGACAAAGCTGCCTTGAAATGCAATGGTAAGGAGGCTGTCACAAACTTTGAACCAAGTTCTTATGTTGCAGAGATGGCTTCTGAGGCGGCTGGCACAGCAGAGAACAACCAGATTCTTGATCTGAACTTGGGAATTGCTCCCCCAAATCTCTGTGAGGCTCAAAGTGAGAGCATTGCCATGTTTGAGAGAAGAGCTATGCCTGAGAACTCTGTTTCAGCAGCAATTAGATCATCCCATTCCCAGCCGTATAGCTTTGCAGTGCCTTCCAATTACCATTCTCCTTGGAGTGTTTCAAACTCCAGTTTCTTTCCCAACTCAAGGGAAAGAGCAACAGAGATGAGGATGGGGGTTGGGTCATGGGAGTGGCAAATCCATGGCCACCCAAGTGGAACAACCTCCGTGCCACTCTTCTCTGCTGCAGCATCATCAGGATTCCCTTCTTCTTCTTCTTCTTCTTCGACTGCCATTCCATCAGCTTCATCTGGTGTTGGTGAAACCCATTTCCCAGCAATCTTCTACTGTAGGAGTTGA 4293 45.89 MNSNASNPHTSMATSSAADSSGKKVRKPYTITKSRESWTEEEHDKFLEALQLRSFIFLLDCSSLDSALLSRLWFDRDWKKIEDFVGSKTVIQSMLQIRSHAQKYFLKVQKNGTIAHVPPPRPKRKASHPYPQKASKNVLVPMQASMAYPSSVNTLALGYCPWEDASIMINPSSCKVTHPQDEFTNLHRSETENASEGTPMINSNSLNVIGSPDTGKQGKQAPMLHGLPDFAEVYGFIGSVFDPEIALPIMLIIKDSGLMHVKTPFWKLCKHLLKATIGDMQVLLLMRNLTFNLSSPDFEPLLLSTLPITCRSQSVGKPQQWQPPARAVREDCIKNWSPLILLRPLWILILAPYQGSYFTGLAYNQMYIFRKALVLRIHLPEMAAAARPLVAVQSLEGDMATDAAPTVPLPDVMKASIRPDIVNFVHANISKNRRQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVISDSAEGIEKTSSAIKALKQIGALPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGIDIVNVERLNLLKLAPGGHLGRFVIWTKTAFEKLDSIYGSFEKSSEKKKGYVLPRAKMVNADLSRIINSDEVQSVVKPIKKDVKRPSLKKNPLKNLNAMLKLNPYAKTARRMSLLAEAQRVKAKQEKLDKKRNIIPKVLSLEFGFLDSEFLIAMYLIDFLVVLLTCKLEEATAVKAAGKAWYQTMISDSDYTEFENFSKWLDKSCIGSRHQWFSWLILPSIKKCCYLLIKKHIFLVSNWHWFVTFKYTIFDFEINCNGCTKLKEREEEEVSPPLLPFSPIRHGNRAPPPIEQRLLPLSLSLSLSSAPHNHTKTVIILFTERGASNPMLDLNLQVVSSDSVEMVTERLFQFPPIRMESAGSFNGDLSASTTGDEDSSSNADEAFPFAFGKDCAVQENLAAKSLCISDNHRDQTMELFPLTGGLSSGSSSQKQWLEVSPPEFHCWSGAPERRITAPPAQQQHQPMRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQVGLAKLILITVRTSNSFSNAIDEELYSWLPLMSQMINFTKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAALKCNGKEAVTNFEPSSYVAEMASEAAGTAENNQILDLNLGIAPPNLCEAQSESIAMFERRAMPENSVSAAIRSSHSQPYSFAVPSNYHSPWSVSNSSFFPNSRERATEMRMGVGSWEWQIHGHPSGTTSVPLFSAAASSGFPSSSSSSSTAIPSASSGVGETHFPAIFYCRS 1430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 775692 786570 + CmaCh14G001850.1 Cma14g00185 307168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00185 1430 MobiDBLite consensus disorder prediction 973 989 - -
Cma14g00185 1430 Gene3D AP2/ERF domain 1213 1272 IPR036955 GO:0003700|GO:0006355
Cma14g00185 1430 Gene3D AP2/ERF domain 1087 1146 IPR036955 GO:0003700|GO:0006355
Cma14g00185 1430 ProSitePatterns Ribosomal protein L1e signature. 501 527 IPR013000 -
Cma14g00185 1430 SUPERFAMILY DNA-binding domain 1087 1146 IPR016177 GO:0003677
Cma14g00185 1430 MobiDBLite consensus disorder prediction 436 476 - -
Cma14g00185 1430 PANTHER BNAC03G35890D PROTEIN 779 815 - -
Cma14g00185 1430 Pfam AP2 domain 1213 1262 IPR001471 GO:0003700|GO:0006355
Cma14g00185 1430 Pfam AP2 domain 1088 1136 IPR001471 GO:0003700|GO:0006355
Cma14g00185 1430 Pfam 60S ribosomal protein L4 C-terminal domain 661 733 IPR025755 -
Cma14g00185 1430 PANTHER 60S RIBOSOMAL PROTEIN L4 779 815 IPR045240 -
Cma14g00185 1430 SUPERFAMILY DNA-binding domain 1213 1272 IPR016177 GO:0003677
Cma14g00185 1430 MobiDBLite consensus disorder prediction 971 990 - -
Cma14g00185 1430 SUPERFAMILY Homeodomain-like 29 110 IPR009057 -
Cma14g00185 1430 CDD AP2 1213 1273 IPR001471 GO:0003700|GO:0006355
Cma14g00185 1430 ProSiteProfiles AP2/ERF domain profile. 1088 1144 IPR001471 GO:0003700|GO:0006355
Cma14g00185 1430 MobiDBLite consensus disorder prediction 1 21 - -
Cma14g00185 1430 MobiDBLite consensus disorder prediction 1 27 - -
Cma14g00185 1430 Pfam Myb-like DNA-binding domain 35 105 IPR001005 -
Cma14g00185 1430 PANTHER BNAC03G35890D PROTEIN 317 752 - -
Cma14g00185 1430 Gene3D - 384 689 IPR023574 GO:0003735|GO:0005840|GO:0006412
Cma14g00185 1430 SUPERFAMILY Ribosomal protein L4 401 648 IPR023574 GO:0003735|GO:0005840|GO:0006412
Cma14g00185 1430 SMART rav1_2 1088 1150 IPR001471 GO:0003700|GO:0006355
Cma14g00185 1430 SMART rav1_2 1214 1277 IPR001471 GO:0003700|GO:0006355
Cma14g00185 1430 CDD SANT 37 105 IPR001005 -
Cma14g00185 1430 Gene3D - 38 110 - -
Cma14g00185 1430 PRINTS Ethylene responsive element binding protein signature 1253 1273 IPR001471 GO:0003700|GO:0006355
Cma14g00185 1430 PRINTS Ethylene responsive element binding protein signature 1215 1226 IPR001471 GO:0003700|GO:0006355
Cma14g00185 1430 MobiDBLite consensus disorder prediction 436 454 - -
Cma14g00185 1430 CDD AP2 1087 1146 IPR001471 GO:0003700|GO:0006355
Cma14g00185 1430 MobiDBLite consensus disorder prediction 1064 1088 - -
Cma14g00185 1430 PANTHER 60S RIBOSOMAL PROTEIN L4 317 752 IPR045240 -
Cma14g00185 1430 ProSiteProfiles AP2/ERF domain profile. 1214 1271 IPR001471 GO:0003700|GO:0006355
Cma14g00185 1430 Pfam Ribosomal protein L4/L1 family 407 647 IPR002136 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01081 Cma-Chr2:6432597 Cma14g00185 Cma-Chr14:775692 1.85E-64 dispersed
Cma06g00347 Cma-Chr6:1612143 Cma14g00185 Cma-Chr14:775692 1.53E-09 dispersed
Cma07g00940 Cma-Chr7:4523344 Cma14g00185 Cma-Chr14:775692 0 dispersed
Cma14g02063 Cma-Chr14:14330280 Cma14g00185 Cma-Chr14:775692 7.35E-53 dispersed
Cma15g01071 Cma-Chr15:6787085 Cma14g00185 Cma-Chr14:775692 1.72E-59 dispersed
Cma16g00097 Cma-Chr16:434759 Cma14g00185 Cma-Chr14:775692 6.04E-53 dispersed
Cma18g01269 Cma-Chr18:9867072 Cma14g00185 Cma-Chr14:775692 9.30E-10 dispersed
Cma18g01270 Cma-Chr18:9873783 Cma14g00185 Cma-Chr14:775692 5.55E-36 dispersed
Cma14g00185 Cma-Chr14:775692 Cma02g00857 Cma-Chr2:5007350 5.42E-119 wgd
Cma14g00185 Cma-Chr14:775692 Cma20g00457 Cma-Chr20:2186182 1.55E-113 wgd
Cma14g00185 Cma-Chr14:775692 Cma03g01256 Cma-Chr3:8261898 0 wgd
Cma14g00185 Cma-Chr14:775692 Cma04g00262 Cma-Chr4:1293232 1.47E-09 wgd
Cma14g00185 Cma-Chr14:775692 Cma04g01236 Cma-Chr4:6333575 4.16E-10 wgd
Cma14g00185 Cma-Chr14:775692 Cma06g00345 Cma-Chr6:1608063 0 wgd
Cma14g00185 Cma-Chr14:775692 Cma07g00939 Cma-Chr7:4516453 8.30E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36170 PF00573 Ribosomal_L4 4.70E-39 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00185 K02930 - csv:101212211 726.857