Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00188 ATGTTGTGTGGAGTAGGGTTTGTAAGTTTGGACTGTGGAGGTCAAGAAAGTTTCACTGACGATATTGGTCTGGAGTGGGTTCCAGATACTCAAATTCGTTTTGGAGAAGCAATTAACATTTCTGTTGTAAATGAGACAAAGAAGCAATATTTGACCTTAAGACACTTCCCTGCTGATTCCAGGAAGTACTGCTACTCACTCAATGTCACTAGTAGAACACGTTACCTTCTCAGAGCAACATTTTTATATGGTAACTTTGACAATAACAACGTGTATCCAAAATTTGATATTTCCCTTGGGGCAACTCACTGGTCAACAATTGTCATATCTGATGCCAACACTATAGAAGTTCGAGAGCTCATATTTCTGGCTTCAACTCCAACAGTAAGCGTCTGTTTGTCAAATGCTACAACTGGGCAGCCATTCATATCCACGCTTGAGCTTCGACAATTTAATGGCTCTACCTACTATACTGAATTTGAGGATCAGTTTTACCTGAGTGTCTCAGCAAGGATTAATTTTGGTGCAGATTCCGAAGCTCCAGTAAGGTATCCTGATGATCCATTTGACCGGATATGGGAGTCAGACTCAGTGAGAAAAGCAAATTACCTTGTTGATGTTGCTGCTGGTACAGAAAAAATTTCCACTAAAATGCCAATAGATGTAGATAGAGATGAAAGGCCACCTCAAAAAGTTATGCAGACGGCTGTAGTCGGAAGAAATGGTTCATTAACTTACCGGTTAAATTTGGATGGTTTCCCTGGCTTTGGATGGGCTGTCACCTACTTCGCAGAAATTGAAGACTTGGGTCCAACTGATACGAGAAAATTCAGGCTTGTACTTCCCGGCATGCCTGATATCAGCAAAGCTGTAGTCAACATTGAAGAAAATGCTCAAGGAAAATATCGGCTTTATGAGCCTGGTTTTACCAACTTAACCTTCCCTTTTGTATTATCTTTTCGGTTTGGGAAAACATCGGATTCTTCGTTGGGACCTCTGTTAAACGCTATGGAGATTAACAAGTATCTTGAAAAAAGTGATGGTTCTCTAGATGGAGCAGCTGCTGCTAGTGTAATTTCAAAATTTTCATCTTCAGATTGGGATGAAGGTGGTGATCCATGCATGCCAGTTCCTTGGTCATGGTTGCAATGTAACTCTGATCCACGGTCAAGAATAGTTAAAATTTCATTGTCCAAAAAGAATTTGACGGGGAGCATCCCCACAGACCTTGCAAAGTTGAGCGGTTTAGTTGAATTATGGCTTGATGGAAATTCGTTCGTAGGTCCTATACCAGACTTTACTGGATGCGCGGACTTAAAAATCCTCCATCTCGAGAACAACCAGTTGACTGGAGAGTTGCCTTCCTCTTTAGCAAATCTACCAAGTTTACGGGAGCTGTATGTTCAGAATAACATGTTATCTGGAACAGTGCCTTCTGGTCTTCTCAATAAAAACCTAGTCATAGACTACTCTGGAAACATCAATCTTCATGAAGGGGGGAAAAAGAACCACGTTTATATCATTGTGGGTTCAGTAATTGGTGCTCTTGTCCTCCTGTTGGCTACTGTGGTATCTTGCTACTTTTTGCAAAAAGGAAGAAAAAGATATCAAGAACAAGATCTACTTGAAGAATCCTTGCCTGTACAAAGATTTGCCTCTTCAAAGGGTGATGCCCCCAAGGAAACCGCACATTGCTTCAGTGTTAATGAAATTGTAGAAGCAACAAGAGATTTTGAAAGAAAAATTGGGTCTGGAGGTTTTGGTGTTGTATACTACGGGAAATTAAATGACGGAAAAGAAATTGCAGTTAAAGTTTTGACTAATAACTCCTTCCAGGGAAAGCGGGAATTTGCGAACGAGGTGACTCTTCTTTCAAGGATTCATCACAGAAATTTGGTACAATTTCTTGGATATTGCCAAGAAGAGGACAGAAGTATGCTTGTCTATGAGTTCATGCATAATGGAACTCTCAAAGAACATCTTTATGGTCCACTAGTACGGGAAAAAACTATCAGTTGGATTAAGCGCCTCGAGATTGCTGAAGATTCTGCAAGAGGGATCGAGTACCTTCATACAGGTTGCATACCAGCAATTATTCATAGAGATCTGAAAAGCAGTAATATTCTCCTTGACAGGCACATGAAAGCAAAGGTTTCGGATTTTGGTCTTTCAAAGCTTGCGGTGGATGGTGTCTCCCACGTGTCCAGCATCGTTCGGGGAACTGTAGGATATTTGGATCCAGAGTATTATATCTCTCAGCAGTTGACAGACAAGAGCGATGTATATAGCTTTGGCGTTATTCTTCTCGAGTTGATATCTGGTCAAGAAGCAATATCTAATGTAAACTTTGGTGTTAATTGCCGCAACATCGTCCAGTGGGCAAAGTTACACATCGAGAGTGGGGACATTCAAGGAATCATCGATCCATCGCTACGCAACGAATATGACATTCAATCGATGTGGAAAATTGCAGAGAAAGCGTTGATGTGTGTCCAGCCACATGGGCACCTGAGGCCATCCATATCTGAAGTGCTGAAGGAGATACAAGATTCACTTTTGATTGAAAGGGAAGCTACTGCAACTAGAGAAGGTAACTCTGATGATATGTCTAGAAACTCAATCCACTCTTTGAATATGGGATCTCTTGATTTATGTGGAAACGAAAACTACGTGTCGTTTGACGAATCCATGGCTCGACCTACTGCAAGGAAAAAACAAAATCGAACGGTGGTGATAAACTTGATTCTCTCATCTCAGTCGTCTCCTTTTCCCTATCTTCACCATCGTCCGATCCATTCCACCACTCCATTTCCACCCGATCTTACTCCTCCTCTCTCTCGCGCCCAAATTACAAATCTTCCGTTTCTCCCAACAGATAGGGTTTTGGCGAAGATGGCTGATGCTCCGGCGAGTCCCGGCGGAGGAAGTCATGAGAGCGGCGAGCAGAGTCCGAGGTCTAATGTTCGTGAGCAGGATAGGTTTCTTCCTATTGCGAATATTAGCAGGATCATGAAGAAAGCTCTTCCTGCTAATGGGAAGATTGCTAAGGATGCTAAGGAGACCGTACAAGAATGTGTGTCGGAGTTCATCAGTTTTATTACCAGCGAGGCAAGTGATAAATGCCAAAGAGAGAAACGAAAGACGATTAATGGCGATGATTTACTTTGGGCGATGGCCACTCTCGGATTTGAGGATTATATCGATCCGCTTAAAACCTACTTGACGAAATACAGAGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGCGATGCGTCGGCTAAGAAAGAAGCTCATCCAACCTCTGTTCCTCAGATCGCTCATGGAGGCTCGTTTTCCCAAGGAGTTAATTATGCGACTTCTCAATCACAAGCCCAGCATCTGATGGTTCCTATGCAAGTTAGGACACAGTATTTCCAACCAACTCCTGGGGGATCCCATTCATTTGTGGCTTGA 3453 42.51 MLCGVGFVSLDCGGQESFTDDIGLEWVPDTQIRFGEAINISVVNETKKQYLTLRHFPADSRKYCYSLNVTSRTRYLLRATFLYGNFDNNNVYPKFDISLGATHWSTIVISDANTIEVRELIFLASTPTVSVCLSNATTGQPFISTLELRQFNGSTYYTEFEDQFYLSVSARINFGADSEAPVRYPDDPFDRIWESDSVRKANYLVDVAAGTEKISTKMPIDVDRDERPPQKVMQTAVVGRNGSLTYRLNLDGFPGFGWAVTYFAEIEDLGPTDTRKFRLVLPGMPDISKAVVNIEENAQGKYRLYEPGFTNLTFPFVLSFRFGKTSDSSLGPLLNAMEINKYLEKSDGSLDGAAAASVISKFSSSDWDEGGDPCMPVPWSWLQCNSDPRSRIVKISLSKKNLTGSIPTDLAKLSGLVELWLDGNSFVGPIPDFTGCADLKILHLENNQLTGELPSSLANLPSLRELYVQNNMLSGTVPSGLLNKNLVIDYSGNINLHEGGKKNHVYIIVGSVIGALVLLLATVVSCYFLQKGRKRYQEQDLLEESLPVQRFASSKGDAPKETAHCFSVNEIVEATRDFERKIGSGGFGVVYYGKLNDGKEIAVKVLTNNSFQGKREFANEVTLLSRIHHRNLVQFLGYCQEEDRSMLVYEFMHNGTLKEHLYGPLVREKTISWIKRLEIAEDSARGIEYLHTGCIPAIIHRDLKSSNILLDRHMKAKVSDFGLSKLAVDGVSHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELISGQEAISNVNFGVNCRNIVQWAKLHIESGDIQGIIDPSLRNEYDIQSMWKIAEKALMCVQPHGHLRPSISEVLKEIQDSLLIEREATATREGNSDDMSRNSIHSLNMGSLDLCGNENYVSFDESMARPTARKKQNRTVVINLILSSQSSPFPYLHHRPIHSTTPFPPDLTPPLSRAQITNLPFLPTDRVLAKMADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQSQAQHLMVPMQVRTQYFQPTPGGSHSFVA 1150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 792274 802765 + CmaCh14G001880.1 Cma14g00188 307171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00188 1150 CDD STKc_IRAK 582 849 - -
Cma14g00188 1150 Pfam Malectin-like domain 10 340 IPR024788 -
Cma14g00188 1150 Gene3D Ribonuclease Inhibitor 353 501 IPR032675 -
Cma14g00188 1150 PRINTS CCAAT-binding transcription factor subunit A signature 1060 1078 - -
Cma14g00188 1150 PRINTS CCAAT-binding transcription factor subunit A signature 1022 1040 - -
Cma14g00188 1150 PRINTS CCAAT-binding transcription factor subunit A signature 1041 1059 - -
Cma14g00188 1150 PANTHER TYROSINE KINASE DOMAIN PROTEIN 6 890 - -
Cma14g00188 1150 Gene3D Transferase(Phosphotransferase) domain 1 652 873 - -
Cma14g00188 1150 ProSiteProfiles Protein kinase domain profile. 576 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma14g00188 1150 ProSitePatterns Protein kinases ATP-binding region signature. 582 604 IPR017441 GO:0005524
Cma14g00188 1150 Pfam Protein kinase domain 579 846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma14g00188 1150 SUPERFAMILY Histone-fold 991 1090 IPR009072 GO:0046982
Cma14g00188 1150 MobiDBLite consensus disorder prediction 1081 1108 - -
Cma14g00188 1150 SMART serkin_6 576 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma14g00188 1150 SUPERFAMILY Protein kinase-like (PK-like) 564 848 IPR011009 -
Cma14g00188 1150 SUPERFAMILY L domain-like 376 483 - -
Cma14g00188 1150 Gene3D Phosphorylase Kinase; domain 1 551 651 - -
Cma14g00188 1150 ProSitePatterns NF-YB/HAP3 subunit signature. 1025 1041 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cma14g00188 1150 Pfam Leucine rich repeat 433 473 IPR001611 GO:0005515
Cma14g00188 1150 MobiDBLite consensus disorder prediction 966 992 - -
Cma14g00188 1150 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 994 1058 IPR003958 -
Cma14g00188 1150 ProSitePatterns Serine/Threonine protein kinases active-site signature. 698 710 IPR008271 GO:0004672|GO:0006468
Cma14g00188 1150 Gene3D Histone, subunit A 982 1110 IPR009072 GO:0046982
Cma14g00188 1150 PANTHER OS07G0107800 PROTEIN-RELATED 6 890 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00350 Cma-Chr6:1625029 Cma14g00188 Cma-Chr14:792274 2.55E-99 dispersed
Cma14g00188 Cma-Chr14:792274 Cma18g00724 Cma-Chr18:6549239 0 dispersed
Cma16g00965 Cma-Chr16:7456100 Cma14g00188 Cma-Chr14:792274 2.28E-49 dispersed
Cma20g00686 Cma-Chr20:3142972 Cma14g00188 Cma-Chr14:792274 2.91E-53 dispersed
Cma08g00037 Cma-Chr8:187872 Cma14g00188 Cma-Chr14:792274 2.70E-11 transposed
Cma08g00213 Cma-Chr8:1193387 Cma14g00188 Cma-Chr14:792274 3.91E-132 transposed
Cma14g00188 Cma-Chr14:792274 Cma04g00263 Cma-Chr4:1297081 1.21E-63 wgd
Cma14g00188 Cma-Chr14:792274 Cma04g01239 Cma-Chr4:6346452 2.67E-71 wgd
Cma14g00188 Cma-Chr14:792274 Cma06g00349 Cma-Chr6:1616971 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36171 PF12819 Malectin_like 2.10E-77 CL0202 Cma TF
69052 PF12819 Malectin_like 2.10E-77 CL0202 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00188 - - csv:101212456 1712.97