Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma14g00188 | ATGTTGTGTGGAGTAGGGTTTGTAAGTTTGGACTGTGGAGGTCAAGAAAGTTTCACTGACGATATTGGTCTGGAGTGGGTTCCAGATACTCAAATTCGTTTTGGAGAAGCAATTAACATTTCTGTTGTAAATGAGACAAAGAAGCAATATTTGACCTTAAGACACTTCCCTGCTGATTCCAGGAAGTACTGCTACTCACTCAATGTCACTAGTAGAACACGTTACCTTCTCAGAGCAACATTTTTATATGGTAACTTTGACAATAACAACGTGTATCCAAAATTTGATATTTCCCTTGGGGCAACTCACTGGTCAACAATTGTCATATCTGATGCCAACACTATAGAAGTTCGAGAGCTCATATTTCTGGCTTCAACTCCAACAGTAAGCGTCTGTTTGTCAAATGCTACAACTGGGCAGCCATTCATATCCACGCTTGAGCTTCGACAATTTAATGGCTCTACCTACTATACTGAATTTGAGGATCAGTTTTACCTGAGTGTCTCAGCAAGGATTAATTTTGGTGCAGATTCCGAAGCTCCAGTAAGGTATCCTGATGATCCATTTGACCGGATATGGGAGTCAGACTCAGTGAGAAAAGCAAATTACCTTGTTGATGTTGCTGCTGGTACAGAAAAAATTTCCACTAAAATGCCAATAGATGTAGATAGAGATGAAAGGCCACCTCAAAAAGTTATGCAGACGGCTGTAGTCGGAAGAAATGGTTCATTAACTTACCGGTTAAATTTGGATGGTTTCCCTGGCTTTGGATGGGCTGTCACCTACTTCGCAGAAATTGAAGACTTGGGTCCAACTGATACGAGAAAATTCAGGCTTGTACTTCCCGGCATGCCTGATATCAGCAAAGCTGTAGTCAACATTGAAGAAAATGCTCAAGGAAAATATCGGCTTTATGAGCCTGGTTTTACCAACTTAACCTTCCCTTTTGTATTATCTTTTCGGTTTGGGAAAACATCGGATTCTTCGTTGGGACCTCTGTTAAACGCTATGGAGATTAACAAGTATCTTGAAAAAAGTGATGGTTCTCTAGATGGAGCAGCTGCTGCTAGTGTAATTTCAAAATTTTCATCTTCAGATTGGGATGAAGGTGGTGATCCATGCATGCCAGTTCCTTGGTCATGGTTGCAATGTAACTCTGATCCACGGTCAAGAATAGTTAAAATTTCATTGTCCAAAAAGAATTTGACGGGGAGCATCCCCACAGACCTTGCAAAGTTGAGCGGTTTAGTTGAATTATGGCTTGATGGAAATTCGTTCGTAGGTCCTATACCAGACTTTACTGGATGCGCGGACTTAAAAATCCTCCATCTCGAGAACAACCAGTTGACTGGAGAGTTGCCTTCCTCTTTAGCAAATCTACCAAGTTTACGGGAGCTGTATGTTCAGAATAACATGTTATCTGGAACAGTGCCTTCTGGTCTTCTCAATAAAAACCTAGTCATAGACTACTCTGGAAACATCAATCTTCATGAAGGGGGGAAAAAGAACCACGTTTATATCATTGTGGGTTCAGTAATTGGTGCTCTTGTCCTCCTGTTGGCTACTGTGGTATCTTGCTACTTTTTGCAAAAAGGAAGAAAAAGATATCAAGAACAAGATCTACTTGAAGAATCCTTGCCTGTACAAAGATTTGCCTCTTCAAAGGGTGATGCCCCCAAGGAAACCGCACATTGCTTCAGTGTTAATGAAATTGTAGAAGCAACAAGAGATTTTGAAAGAAAAATTGGGTCTGGAGGTTTTGGTGTTGTATACTACGGGAAATTAAATGACGGAAAAGAAATTGCAGTTAAAGTTTTGACTAATAACTCCTTCCAGGGAAAGCGGGAATTTGCGAACGAGGTGACTCTTCTTTCAAGGATTCATCACAGAAATTTGGTACAATTTCTTGGATATTGCCAAGAAGAGGACAGAAGTATGCTTGTCTATGAGTTCATGCATAATGGAACTCTCAAAGAACATCTTTATGGTCCACTAGTACGGGAAAAAACTATCAGTTGGATTAAGCGCCTCGAGATTGCTGAAGATTCTGCAAGAGGGATCGAGTACCTTCATACAGGTTGCATACCAGCAATTATTCATAGAGATCTGAAAAGCAGTAATATTCTCCTTGACAGGCACATGAAAGCAAAGGTTTCGGATTTTGGTCTTTCAAAGCTTGCGGTGGATGGTGTCTCCCACGTGTCCAGCATCGTTCGGGGAACTGTAGGATATTTGGATCCAGAGTATTATATCTCTCAGCAGTTGACAGACAAGAGCGATGTATATAGCTTTGGCGTTATTCTTCTCGAGTTGATATCTGGTCAAGAAGCAATATCTAATGTAAACTTTGGTGTTAATTGCCGCAACATCGTCCAGTGGGCAAAGTTACACATCGAGAGTGGGGACATTCAAGGAATCATCGATCCATCGCTACGCAACGAATATGACATTCAATCGATGTGGAAAATTGCAGAGAAAGCGTTGATGTGTGTCCAGCCACATGGGCACCTGAGGCCATCCATATCTGAAGTGCTGAAGGAGATACAAGATTCACTTTTGATTGAAAGGGAAGCTACTGCAACTAGAGAAGGTAACTCTGATGATATGTCTAGAAACTCAATCCACTCTTTGAATATGGGATCTCTTGATTTATGTGGAAACGAAAACTACGTGTCGTTTGACGAATCCATGGCTCGACCTACTGCAAGGAAAAAACAAAATCGAACGGTGGTGATAAACTTGATTCTCTCATCTCAGTCGTCTCCTTTTCCCTATCTTCACCATCGTCCGATCCATTCCACCACTCCATTTCCACCCGATCTTACTCCTCCTCTCTCTCGCGCCCAAATTACAAATCTTCCGTTTCTCCCAACAGATAGGGTTTTGGCGAAGATGGCTGATGCTCCGGCGAGTCCCGGCGGAGGAAGTCATGAGAGCGGCGAGCAGAGTCCGAGGTCTAATGTTCGTGAGCAGGATAGGTTTCTTCCTATTGCGAATATTAGCAGGATCATGAAGAAAGCTCTTCCTGCTAATGGGAAGATTGCTAAGGATGCTAAGGAGACCGTACAAGAATGTGTGTCGGAGTTCATCAGTTTTATTACCAGCGAGGCAAGTGATAAATGCCAAAGAGAGAAACGAAAGACGATTAATGGCGATGATTTACTTTGGGCGATGGCCACTCTCGGATTTGAGGATTATATCGATCCGCTTAAAACCTACTTGACGAAATACAGAGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGCGATGCGTCGGCTAAGAAAGAAGCTCATCCAACCTCTGTTCCTCAGATCGCTCATGGAGGCTCGTTTTCCCAAGGAGTTAATTATGCGACTTCTCAATCACAAGCCCAGCATCTGATGGTTCCTATGCAAGTTAGGACACAGTATTTCCAACCAACTCCTGGGGGATCCCATTCATTTGTGGCTTGA | 3453 | 42.51 | MLCGVGFVSLDCGGQESFTDDIGLEWVPDTQIRFGEAINISVVNETKKQYLTLRHFPADSRKYCYSLNVTSRTRYLLRATFLYGNFDNNNVYPKFDISLGATHWSTIVISDANTIEVRELIFLASTPTVSVCLSNATTGQPFISTLELRQFNGSTYYTEFEDQFYLSVSARINFGADSEAPVRYPDDPFDRIWESDSVRKANYLVDVAAGTEKISTKMPIDVDRDERPPQKVMQTAVVGRNGSLTYRLNLDGFPGFGWAVTYFAEIEDLGPTDTRKFRLVLPGMPDISKAVVNIEENAQGKYRLYEPGFTNLTFPFVLSFRFGKTSDSSLGPLLNAMEINKYLEKSDGSLDGAAAASVISKFSSSDWDEGGDPCMPVPWSWLQCNSDPRSRIVKISLSKKNLTGSIPTDLAKLSGLVELWLDGNSFVGPIPDFTGCADLKILHLENNQLTGELPSSLANLPSLRELYVQNNMLSGTVPSGLLNKNLVIDYSGNINLHEGGKKNHVYIIVGSVIGALVLLLATVVSCYFLQKGRKRYQEQDLLEESLPVQRFASSKGDAPKETAHCFSVNEIVEATRDFERKIGSGGFGVVYYGKLNDGKEIAVKVLTNNSFQGKREFANEVTLLSRIHHRNLVQFLGYCQEEDRSMLVYEFMHNGTLKEHLYGPLVREKTISWIKRLEIAEDSARGIEYLHTGCIPAIIHRDLKSSNILLDRHMKAKVSDFGLSKLAVDGVSHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELISGQEAISNVNFGVNCRNIVQWAKLHIESGDIQGIIDPSLRNEYDIQSMWKIAEKALMCVQPHGHLRPSISEVLKEIQDSLLIEREATATREGNSDDMSRNSIHSLNMGSLDLCGNENYVSFDESMARPTARKKQNRTVVINLILSSQSSPFPYLHHRPIHSTTPFPPDLTPPLSRAQITNLPFLPTDRVLAKMADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQSQAQHLMVPMQVRTQYFQPTPGGSHSFVA | 1150 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 792274 | 802765 | + | CmaCh14G001880.1 | Cma14g00188 | 307171 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma14g00188 | 1150 | CDD | STKc_IRAK | 582 | 849 | - | - | |
Cma14g00188 | 1150 | Pfam | Malectin-like domain | 10 | 340 | IPR024788 | - | |
Cma14g00188 | 1150 | Gene3D | Ribonuclease Inhibitor | 353 | 501 | IPR032675 | - | |
Cma14g00188 | 1150 | PRINTS | CCAAT-binding transcription factor subunit A signature | 1060 | 1078 | - | - | |
Cma14g00188 | 1150 | PRINTS | CCAAT-binding transcription factor subunit A signature | 1022 | 1040 | - | - | |
Cma14g00188 | 1150 | PRINTS | CCAAT-binding transcription factor subunit A signature | 1041 | 1059 | - | - | |
Cma14g00188 | 1150 | PANTHER | TYROSINE KINASE DOMAIN PROTEIN | 6 | 890 | - | - | |
Cma14g00188 | 1150 | Gene3D | Transferase(Phosphotransferase) domain 1 | 652 | 873 | - | - | |
Cma14g00188 | 1150 | ProSiteProfiles | Protein kinase domain profile. | 576 | 853 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma14g00188 | 1150 | ProSitePatterns | Protein kinases ATP-binding region signature. | 582 | 604 | IPR017441 | GO:0005524 | |
Cma14g00188 | 1150 | Pfam | Protein kinase domain | 579 | 846 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma14g00188 | 1150 | SUPERFAMILY | Histone-fold | 991 | 1090 | IPR009072 | GO:0046982 | |
Cma14g00188 | 1150 | MobiDBLite | consensus disorder prediction | 1081 | 1108 | - | - | |
Cma14g00188 | 1150 | SMART | serkin_6 | 576 | 853 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma14g00188 | 1150 | SUPERFAMILY | Protein kinase-like (PK-like) | 564 | 848 | IPR011009 | - | |
Cma14g00188 | 1150 | SUPERFAMILY | L domain-like | 376 | 483 | - | - | |
Cma14g00188 | 1150 | Gene3D | Phosphorylase Kinase; domain 1 | 551 | 651 | - | - | |
Cma14g00188 | 1150 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 1025 | 1041 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Cma14g00188 | 1150 | Pfam | Leucine rich repeat | 433 | 473 | IPR001611 | GO:0005515 | |
Cma14g00188 | 1150 | MobiDBLite | consensus disorder prediction | 966 | 992 | - | - | |
Cma14g00188 | 1150 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 994 | 1058 | IPR003958 | - | |
Cma14g00188 | 1150 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 698 | 710 | IPR008271 | GO:0004672|GO:0006468 | |
Cma14g00188 | 1150 | Gene3D | Histone, subunit A | 982 | 1110 | IPR009072 | GO:0046982 | |
Cma14g00188 | 1150 | PANTHER | OS07G0107800 PROTEIN-RELATED | 6 | 890 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g00350 | Cma-Chr6:1625029 | Cma14g00188 | Cma-Chr14:792274 | 2.55E-99 | dispersed | |
Cma14g00188 | Cma-Chr14:792274 | Cma18g00724 | Cma-Chr18:6549239 | 0 | dispersed | |
Cma16g00965 | Cma-Chr16:7456100 | Cma14g00188 | Cma-Chr14:792274 | 2.28E-49 | dispersed | |
Cma20g00686 | Cma-Chr20:3142972 | Cma14g00188 | Cma-Chr14:792274 | 2.91E-53 | dispersed | |
Cma08g00037 | Cma-Chr8:187872 | Cma14g00188 | Cma-Chr14:792274 | 2.70E-11 | transposed | |
Cma08g00213 | Cma-Chr8:1193387 | Cma14g00188 | Cma-Chr14:792274 | 3.91E-132 | transposed | |
Cma14g00188 | Cma-Chr14:792274 | Cma04g00263 | Cma-Chr4:1297081 | 1.21E-63 | wgd | |
Cma14g00188 | Cma-Chr14:792274 | Cma04g01239 | Cma-Chr4:6346452 | 2.67E-71 | wgd | |
Cma14g00188 | Cma-Chr14:792274 | Cma06g00349 | Cma-Chr6:1616971 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36171 | PF12819 | Malectin_like | 2.10E-77 | CL0202 | Cma | TF | |
69052 | PF12819 | Malectin_like | 2.10E-77 | CL0202 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma14g00188 | - | - | csv:101212456 | 1712.97 |