Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma14g00203 | ATGAGCGTGATCGACCTTTTGACCAGAGTAGACGCGATCTGCCAGAAATACGACAAATATGATGTAGAGAAGCAGAGAGATCTCAATGTCTCTGGTGACGATGCTTTCGCTCGACTCTTTGCCACCGTCGAAGCCGACATTGAAGCCGCTCTCCAGAAAGCGGAGGATGCTTCCAGAGAGAAGAATAGGGCATCGGTTGTGGCGTTGAATGCGGAGATTCGTCATACCAAGGCTCGGTTACTAGAGGAGGTCCCCAAGTTGCAGAGATTAGCTGTAAAGAGGGTTAAAGGACTATCAACTGAAGATCTTACCACTCGAAATGATTTGGTGCTTGCATTGCCGGATAGGATTCAAGCTATACCAGATGGAACTGCCTCTTCCTCAAAGAAGAATGGGGGTTGGACCTCCTCAACTTCACGTGCTGAAATCAAATTTGACTCGGATGGGCGATTTGATAATGAGTACTTCCAACACACTGAGGAGTCGAGTCAATTCAGACAAGAGTATGAAATGCGGAAAATGAAGCAGGATCAAGGATTAGACATGATATCAGAGGGGTTGGATACTCTGAAGAACATGGCGCATGATATGAATGAAGAAATAGACAGGCAAGTTCCTTTGATGGACGAGATTGACACTAAGGTGGACAAGGCTGCATCTGACCTTAAGAACACTAACGTTAGATTAAGGGACACAGTTAACCAGCTAAGGTCCAGCAGAAATTTCTGCATCGATATCATTTTGTTGTGTATAATCTTGGGTATTGCTGCCTATCTATACAAGTAA | 786 | 44.91 | MSVIDLLTRVDAICQKYDKYDVEKQRDLNVSGDDAFARLFATVEADIEAALQKAEDASREKNRASVVALNAEIRHTKARLLEEVPKLQRLAVKRVKGLSTEDLTTRNDLVLALPDRIQAIPDGTASSSKKNGGWTSSTSRAEIKFDSDGRFDNEYFQHTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEIDRQVPLMDEIDTKVDKAASDLKNTNVRLRDTVNQLRSSRNFCIDIILLCIILGIAAYLYK | 261 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 874017 | 876079 | + | CmaCh14G002030.1 | Cma14g00203 | 307186 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma14g00203 | 261 | SMART | tSNARE_6 | 165 | 232 | IPR000727 | - | |
| Cma14g00203 | 261 | Gene3D | - | 170 | 231 | - | - | |
| Cma14g00203 | 261 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 170 | 232 | IPR000727 | - | |
| Cma14g00203 | 261 | CDD | SNARE_Qc | 175 | 230 | - | - | |
| Cma14g00203 | 261 | Coils | Coil | 40 | 67 | - | - | |
| Cma14g00203 | 261 | PANTHER | SYNTAXIN-73 | 1 | 260 | - | - | |
| Cma14g00203 | 261 | Pfam | SNARE domain | 207 | 256 | IPR000727 | - | |
| Cma14g00203 | 261 | ProSitePatterns | Syntaxin / epimorphin family signature. | 176 | 215 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Cma14g00203 | 261 | PANTHER | SYNTAXIN | 1 | 260 | IPR045242 | - | |
| Cma14g00203 | 261 | Coils | Coil | 219 | 239 | - | - | |
| Cma14g00203 | 261 | SUPERFAMILY | SNARE fusion complex | 163 | 230 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma01g01054 | Cma-Chr1:7801533 | Cma14g00203 | Cma-Chr14:874017 | 6.49E-174 | transposed | |
| Cma14g00203 | Cma-Chr14:874017 | Cma02g00885 | Cma-Chr2:5257841 | 6.52E-121 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma14g00203 | K08506 | - | csv:101215905 | 474.167 |