Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma14g00204 | ATGTCAACTAATCCCTTTTCTCTTCTCTCTTCCACTCCCACTCCCACTGCCTTTGCTCACCACCCAGATGCAAACCCTAACCCTAAACCCAAACCGTCCGCTGCGTCAAAGAAGAAGCGAAACCTCCCCGGAACCCCAGATCCTGATGCGGAGGTTGTTGCTTTGTCGCCGAAATCACTCATGGCGACGAACAGATTCATATGTGAAATTTGCAATAAGGGGTTTCAAAGAGATCAGAATCTGCAACTTCATCGACGTGGACATAACCTACCGTGGAAGCTTCGACAACGAACGAACAAGGAGCCGATCAAGAAGAAGGTGTATATTTGCCCGGAGAAGACGTGTGTTCACCACGATCCATCACGAGCCCTCGGTGATCTCACCGGAGTAAAGAAACATTTCAGCCGAAAACACGGCGAGAAGAAATGGAAATGTGATAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGGACTAGAGAATATAAGTGTGATTGTGGAACCCTTTTTTCCAGGAAAGACAGCTTCATAACCCACAGAGCATTTTGCGATGCATTAGCTGAAGAAAGTGCAAGAATCACGACAGTTTCAGCAACAAATATTCTGAATAATCTCAGAAATGATTCAGTTCTTCTTCATCAACAAGATCAATCTTTGATTGATCATCAGACCAATAATCTTCAAACACTTGGAGATGTTCCTGCCCTTTCCCAATTCACTCATTCTGATCATTTTCTAAGAGACTTTGAAGATCATCAACACAAGAACAGATCTCCTTTTTCACTTTGGTTGAACAATAACAACAATATTTCCAACTTTTATGGAGCTTCCTCTTCTTCTTCCAATCTTTTTGGATCGATAGCCGAAACCGGCCTTTCGATGTTGCCGGTGTTCGAGAAGGAAGATGTTGAGAAGAAGGGAAGTTCGTCGAAAGCTACGTCATCGGCAGCTGCACTGTTGTCGGGTCAGTCGTCGTCTGTTGTTTCTTCTTCTCCGATGTCGGCCACCGCCCTTCTGCAAAAAGCTGCTCTTATGGGCTCAACTAGAAGCAGCACCAACAATAATTCCCTGCTCATCGATGCCGGTGCTTTCGGAGTGATGAACTCTTCGTCTTTGTCATCGTCCTCGTCCTCCAACGCTGTAAGCTTGAACTCTTTGAACAAATCTAGAAGCATGACAATGGCTGACTCGGTTCAGATGGTCGGTAGCAACTCCGATTTAAGCTCGAATATTCTCAGCCAGCTTCTAATGCCACTCAATAATGGTAACAACCGTATGAAAAGTAACGACCAAACGAGAGACTTCCTCGGTGTCGGAGGAAATGGAGAAGCACCCCGGCCGCCGTTCCTTCCACCGGAGCTGGCAAAATTCGCCGCCATAAACTCAACAATGGGACTAAGCCAGTTCGCCGCCAACCACTAA | 1446 | 45.71 | MSTNPFSLLSSTPTPTAFAHHPDANPNPKPKPSAASKKKRNLPGTPDPDAEVVALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEPIKKKVYICPEKTCVHHDPSRALGDLTGVKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVSATNILNNLRNDSVLLHQQDQSLIDHQTNNLQTLGDVPALSQFTHSDHFLRDFEDHQHKNRSPFSLWLNNNNNISNFYGASSSSSNLFGSIAETGLSMLPVFEKEDVEKKGSSSKATSSAAALLSGQSSSVVSSSPMSATALLQKAALMGSTRSSTNNNSLLIDAGAFGVMNSSSLSSSSSSNAVSLNSLNKSRSMTMADSVQMVGSNSDLSSNILSQLLMPLNNGNNRMKSNDQTRDFLGVGGNGEAPRPPFLPPELAKFAAINSTMGLSQFAANH | 481 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 883176 | 885361 | + | CmaCh14G002040.1 | Cma14g00204 | 307187 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma14g00204 | 481 | Gene3D | Classic Zinc Finger | 118 | 200 | - | - | |
| Cma14g00204 | 481 | Pfam | Zinc-finger double-stranded RNA-binding | 66 | 88 | IPR022755 | - | |
| Cma14g00204 | 481 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 66 | 88 | IPR013087 | - | |
| Cma14g00204 | 481 | SMART | c2h2final6 | 66 | 88 | IPR013087 | - | |
| Cma14g00204 | 481 | SMART | c2h2final6 | 108 | 138 | IPR013087 | - | |
| Cma14g00204 | 481 | SMART | c2h2final6 | 143 | 163 | IPR013087 | - | |
| Cma14g00204 | 481 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 68 | 88 | IPR013087 | - | |
| Cma14g00204 | 481 | Gene3D | Classic Zinc Finger | 45 | 117 | - | - | |
| Cma14g00204 | 481 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 20 | 451 | - | - | |
| Cma14g00204 | 481 | SUPERFAMILY | beta-beta-alpha zinc fingers | 65 | 163 | IPR036236 | - | |
| Cma14g00204 | 481 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
| Cma14g00204 | 481 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
| Cma14g00204 | 481 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 13-RELATED | 20 | 451 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma07g00934 | Cma14g00204 | CCT | |
| Cma07g00934 | Cma14g00204 | ECH | |
| Cma06g00370 | Cma14g00204 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma14g00204 | Cma-Chr14:883176 | Cma18g00661 | Cma-Chr18:6056044 | 1.68E-111 | dispersed | |
| Cma04g00971 | Cma-Chr4:4993365 | Cma14g00204 | Cma-Chr14:883176 | 1.23E-108 | transposed | |
| Cma13g00185 | Cma-Chr13:1415374 | Cma14g00204 | Cma-Chr14:883176 | 7.30E-100 | wgd | |
| Cma14g00204 | Cma-Chr14:883176 | Cma06g00370 | Cma-Chr6:1719002 | 0 | wgd | |
| Cma14g00204 | Cma-Chr14:883176 | Cma07g00934 | Cma-Chr7:4486189 | 3.54E-118 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 36174 | PF12171 | zf-C2H2_jaz | 7.00E-05 | CL0361 | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma14g00204 | K25870 | - | csv:101213422 | 686.026 |