Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma14g00207 | ATGGGTAACATTGGTAGTAGCGGTTCCAATAGCCGGAGAAGGCACGGTAGCCGCCGAGGCGGCCACCAGACTCCGCCTCCACCAGCCCCACCGCAGCCCGAGATTACAAGTAATCGGTACGTTTTCGCTGCCGCTACGCCTTACCCATCTCAATACCCCAACCATCCGAATCACCCACCGCCGTATTACCAGTATCCTGGTTTCTTTCCGCCGCCGCCGCCTGGTCCGCCGCCGTCGATGCCGATGTCTTTGCCGCCTCCTTACGATCACCACCACCGTGGAGCCCATCCCCACATGGATCCCGCGCATTGGGTCGGTGGGAGGTACCCTTATGGCCCTCCTATGCCGCCCCAAACGCCGTATGTTGAGCACCAGAAGGCGGTTACCATACGAAACGATGTCAATCTCAAGAAGGAAACTCTTAGGGTCGAGCCTGATGAAGAAAACCCCGGCCAATTCCTTGTAGCATTCACGTTCGATGCCACCGTCGCCGGAAGTATCACCATCTTCTTCTTTGCAAAAGAAGGTGAAGATTGCAACTTGACTCCCGTAAAAGAAGACATTCTTCAACCAGTGACTGTCCATTTCGAACAAGGCCTTGGACAGAAGTTCAGACAACCTTCTGGAACAGGAATAGATTTCTCAAAGTTTGAAGAGTCAGAATTTCTGAAAGTAAATGACACGGATGTCTATCCATTAGCAGTGAAAGCTGAAGCCTCCACTGACAGCCAAACTGGCCCAGATGGTACCTTGGTACCTGAGCCCATGAATGCTCAGATAACCCAGGCTGTGTTTGAGAAAGATAAAGGTGAATATCAGGCAAGAGTGTTGAAACAAATCCTGTGGGTCAATGGTATGAGATATGAGCTGCAGGAGATATATGGCATTGGCAATTCAGTCGAGGGCGAGGTCGATGGAAATGACCCCGGAAAGGAATGCGTCATTTGCTTGTCGGAACCACGGGACACGACTGTACTTCCCTGCCGACACATGTGCATGTGTAGTGGTTGTGCTAAGGTGTTGAGGTTCCAGACGAATCGATGCCCGATTTGCAGACAACCAGTCGATAGGCTCTTAGAGATAAGGGTCAGCAATGGACCAGAAGAATAA | 1110 | 51.62 | MGNIGSSGSNSRRRHGSRRGGHQTPPPPAPPQPEITSNRYVFAAATPYPSQYPNHPNHPPPYYQYPGFFPPPPPGPPPSMPMSLPPPYDHHHRGAHPHMDPAHWVGGRYPYGPPMPPQTPYVEHQKAVTIRNDVNLKKETLRVEPDEENPGQFLVAFTFDATVAGSITIFFFAKEGEDCNLTPVKEDILQPVTVHFEQGLGQKFRQPSGTGIDFSKFEESEFLKVNDTDVYPLAVKAEASTDSQTGPDGTLVPEPMNAQITQAVFEKDKGEYQARVLKQILWVNGMRYELQEIYGIGNSVEGEVDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVDRLLEIRVSNGPEE | 369 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 889938 | 893795 | - | CmaCh14G002070.1 | Cma14g00207 | 307190 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma14g00207 | 369 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN-RELATED | 1 | 369 | - | - | |
| Cma14g00207 | 369 | ProSiteProfiles | Zinc finger RING-type profile. | 313 | 352 | IPR001841 | - | |
| Cma14g00207 | 369 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 297 | 362 | IPR013083 | - | |
| Cma14g00207 | 369 | SUPERFAMILY | RING/U-box | 312 | 358 | - | - | |
| Cma14g00207 | 369 | MobiDBLite | consensus disorder prediction | 1 | 82 | - | - | |
| Cma14g00207 | 369 | SMART | ring_2 | 313 | 351 | IPR001841 | - | |
| Cma14g00207 | 369 | MobiDBLite | consensus disorder prediction | 52 | 82 | - | - | |
| Cma14g00207 | 369 | CDD | mRING-HC-C3HC5_MGRN1_like---blasttree | 312 | 352 | IPR045195 | - | |
| Cma14g00207 | 369 | Pfam | Zinc finger, C3HC4 type (RING finger) | 311 | 357 | - | - | |
| Cma14g00207 | 369 | PANTHER | MAHOGUNIN | 1 | 369 | IPR045194 | GO:0061630 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma06g00374 | Cma14g00207 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma06g01434 | Cma-Chr6:9208912 | Cma14g00207 | Cma-Chr14:889938 | 1.56E-94 | dispersed | |
| Cma14g00207 | Cma-Chr14:889938 | Cma14g01676 | Cma-Chr14:12503100 | 2.50E-81 | dispersed | |
| Cma14g00207 | Cma-Chr14:889938 | Cma06g00374 | Cma-Chr6:1731335 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma14g00207 | - | - | cmax:111482503 | 645.966 |