Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00224 ATGTCACAACAGTCTGAGGAGATAAAGACGACTGAGAAGTGGAAATGGTCCGAAATGCAAGGCCTTGAGCTCCTCTCTTCTGATCCTCTTCCTCCTAAACCATCACCCCCAACACCGAAACACACAGACCCCGAAGACCTCAGCCCCAAAGAGGAGGAGGCTGAACACGGAATTGGCAGACCCACAAACGGAGAAATGGAATCTTCAACTGATTCCAAGAAGGAAAACGGCGGTGGCACCAGTGGGGAGAAACCTGAAGCCGTCACTTCCGTTGGGTTTGGGGAGCTTTTCAGATTCGCCGATGGGTTGGATTACGTTTTGATGGCAATTGGGTCGGTCGGAGCCCTTGTCCACGGTTGTTCTTTGCCTCTGTTTCTCCGTTTCTTCGCTGATCTTGTTAACTCTTTTGGGTCTTACGCCAATGATGTGGATAAAATGATGCAGGAGGTTTTGAAGTACGCATTTTACTTCCTCGTGGTTGGAGCTGCGATATGGGCGTCATCCTGGGCAGAGATTTCGTGTTGGATGTGGACCGGCGAGCGGCAGTCCACAAAGATGAGGATCAAGTACCTAGAAGCCGCACTGGACCAAGACATTCAGTATTTTGATACAGAGGTGCGAACATCTGACGTCATTTTCGCCATCAACACTGATGCAGTGATGGTCCAAGACGCCATTAGTGAGAAGCTGGGCAACTTCATACACTATATGGCAACATTTGTGTCCGGATTCGTTGTGGGTTTCACTGCTGTGTGGCAATTGGCGTTGGTAACTCTTGCGGTGGTTCCTTTGATTGCCGTAATCGGCGGCATCTACACCACCACAATAGCCAAGCTCTCTGCCAAGTCCCAGGAAGCTCTTTCAGAGGCTGGAAATATCGTCGAACAGACAATAGTTCAAATCCGAGTTGTTTTGGAGTTCGTGGGCGAATCAAGAGCGTTGCAGAGATACTCCTCCGCGTTGAAGATTTCTCAAAAGATAGGTTACAAGACTGGATTCTCCAAGGGTATGGGATTGGGCGCCACTTATTTTGTTGTTTTCTGCTGTTACGCTCTTCTGCTCTGGTACGGAGGTTATCTCGTCAGACACCACGCCACCAATGGCGGTCTGGCCATAGCCACTATGTTTGCCGTGATGATTGGCGGACTGGCATTGGGACAATCTGCTCCGAGCATGAGTTCGTTCGCAAAGGCTAGAGTTGCAGCTGCCAAAATCTATCGTATAATCGATCACAAGCCCACTCTAAACAGCAACAACGAATCTGGTTTGGAATTAGAGTCAGTTTCAGGACTGGTTGAACTGAAGAATGTGGATTTCTCATACCCATCAAGGCCAGATGTAAGAATCCTGAACAACTTCTCTCTAACTGTCCCTGCCGGAAAAACTATAGCTCTGGTCGGTAGCAGCGGCTCGGGCAAGAGCACCGTCATCTCCCTAATTGAAAGATTCTATGACCCCATTTCAGGAGAAGTTTTACTAGATGGGCGTGACATAAAAACTTTGAAGCTGAGATGGTTAAGGCAACAGATAGGACTGGTGAGCCAAGAACCTGCACTTTTTGCCACCACCATCAAGGAGAATATTCTCTTGGGCAGACCTGATGCAGACCAAGTTGAGGTGGAGGAAGCTGCTCGAGTCGCCAATGCTCATTCATTCATTATCAAACTTCCTGAAGGCTATGACACCCAGGTAGGGGAAAGAGGACTGCAGCTTTCTGGAGGGCAGAAGCAGAGGATTGCAATAGCAAGGGCAATGCTGAAAAACCCTGCGATCCTACTCTTAGACGAGGCTACTAGTGCATTGGATTCTGAGTCAGAAAAGCTTGTACAGGAGGCTCTTGATCGTTTTATGATCGGGCGGACAACTCTTCTTATTGCCCATCGGCTCTCTACCATTCGTAAGGCTGACCTTGTGGCTGTAATCCAACAGGGAAGTGTTTCTGAAATTGGAACACATGACGAGCTCATTGCCAAAGGAGAGAATGGTGTATACGCCAAGCTTATCCGGATGCAGGAGATGGCACATGAAACTGCTCTCAATAATGCCAGAAAGAGTAGTGCAAGGGCTTCAAGTGCCAGGAACTCAGTGAGTTCCCCAATCATTGCACGGAATTCTTCCTATGGACGATCGCCTTATTCACGTCGGTTATCTGACTTTTCCACATCTGATTTTAGTCTTTCTCTGGATTCTTCACTTCCCAATTACAGGCTTGAAAAACTGGCCTTTAAGGAGCAAGCCAGTTCCTTCTGGCGTCTTGTGAAAATGAATTCACCCGAATGGCTTTATGCATTACTTGGTTCTGTTGGTTCTGTTGTCTGTGGGTTTCTAAGCGCCTTCTTTGCATATGTTCTAAGTGCTGTTCTCAGTGTCTACTACAACCCAGACCATGCTTTCATGAGCAGAGAAATTATTAAGTACTGCTACTTATTAATCGGACTTTCGTCAGCTGCTCTTCTCTTCAATACAATACAGCATTTCTTCTGGGATATTGTGGGAGAGAACCTCACCAAACGTGTAAGAGAAAAGATGCTGACAGCAGTACTGAAAAATGAAATGGCATGGTTTGATCAGGAAGAAAATGAAAGTGCAAAAATTGCTGCTAGGCTGGCCCTTGATGCTAACAACGTTAGATCAGCTATTGGAGACAGGATTTCTGTGATTGTACAGAACACGTCACTCATGCTAGTTGCATGCACAGCTGGGTTCGTTTTGCAGTGGCGCCTATCTCTTGTCCTTGTAGCCGTCTTCCCCGTGGTCGTTGCGGCCACTGTTCTACAGAAAATGTTCATGACTGGTTTTTCAGGAGACCTTGAGGCTAACCATGCCAAGGCCACACAACTAGCAGGGGAAGCCATAGCCAATGTAAGGACAGTTGCTGCATTCAATTCTGAGGAAAAGATTGTCAGACTTTTCTCAACCAACCTCGAGATCCCACTACGCCGCTGCTTTTGGAAGGGACAGATTGCTGGCAGCGGCTTTGGCGTTGCTCAGTTCTCTCTTTACGCTTCCTATGCTCTTGGTCTTTGGTATGCCTCATGGCTTGTAAAGCATGGGCTCTCTGATTTTTCGAAGGCAATCCGTGTTTTCATGGTCCTTATGGTTTCTGCAAATGGCGCAGCTGAAACACTCACTCTAGCTCCTGACTTTATTAAGGGTGGTCGAGCCATGCGATCCGTCTTTGCACTTCTTGACCGCAAAACTGAAATTGAACCCGATGATCCAGATGCCACTCCAGTCCCAGATAAACTTCGTGGAGAAGTTGAATTTAAACATGTTGACTTTTCCTACCCAACTCGCCCTGATATCCCTGTCTTTAGAGATCTTAGTTTGCGTGCCCGAGCAGGTAAGACTCTTGCTCTTGTTGGCCCAAGCGGGTGTGGCAAGAGCTCTGTTATTGCACTAGTCCAAAGATTCTATGAGCCAACTTCAGGACGAGTTATGATTGATGGAAAGGATATTCGTAAGTTCAACCTCAAGTCTTTGAGAAAGCACATTGCCATGGTCCCTCAGGAGCCATGCTTATTTGCTGCTTCCATATATGATAATATAGCTTATGGCCACGAATCAGCCTCTGAAGCTGAGATCATTGAAGCCGCTACTTTGGCAAATGCCCACAAGTTCATATCTGCATTGCCAGAAGGATATCAAACTTTTGTTGGCGAGAGGGGAGTTCAACTATCGGGTGGACAGAAACAAAGAATTGCAATTGCTCGTGCTCTGGTCAGGAAGGCAGAGCTTATGCTACTAGATGAGGCAACAAGTGCACTTGATGCTGAGTCTGAGCGGTCCGTCCAGGAGGCGCTCGACCGAGCTTGTTCAGGAAAAACAACAATTGTAGTTGCTCATCGACTATCAACTATCAGGAATGCCCATGTCATTGCAGTAATTGATGATGGTAAAGTTTCAGAGCAGGGATCGCACTCACATTTGTTGAAAAATTATCCTGATGGGTGTTACGCCCGGATGCAAAAGGTGGAAGAAGTAGTTGCAGCAGCTAAAAATGAAGTTGAGAAGAAATCGGCGGCAGCTGTAGCTCCAGCTCCAGCTCCAGCTCCGGCGGCGGTTCCGGCAGTCGCGGAGGATGGAGCGAAGAAAGAAGACGGCGGAGCTATCACCGCCATATACAAAATCGACATGCATTGCGAAGGGTGTGCAAAGAAGATTAAACGAGCTGTCCGACATGTCAAAGATGTGGAGAGTGTTAAGACGGATTGTGCGGCGAATAAGTTAACTGTGATTGGGAAAATGGATGTCGTTGCGGTGAAAGAGAAATTGGAGCTTAAAACCAAGAAGAAAGTGGAGATTATTTCCCCTCAGCCGAAAAAAGACGGCGGCGCTGTCGCCGCCCCGGCGGAGAAGAAGGCCGATGAGAAGAAGCCGGAAGAGAAGAAAGCCCCTGAAGAAAAACCCAAGGAGAGCACTGTCGTTTTGAAAATCCGGCTGCATTGTGAAGGATGCATACAAAAAATCCGCAAAATCATCTTGAAAATCAATGGGGTTCAATCGGTGGCTTTGGACGGAGCCAAGGATTTGGTCACCGTGAAAGGAACAATGGATGTGAAGCAACTCGAGCCGTATCTCAAAGACAAACTCAAAAGAAACGTGGAGATTATCCCACCCAAGAAGGAAGAACCCGCCGGTGAAAAGAAAAAAGAAGAATCCCCTGCACCTGCCGCCGTGGTTGCTGTCCCCGTCGCCGTTGAAGCTGGTGGTGGTGAGAAGAAGGAAGAAGCTGGTGGCGGTGGTGAGAAAAAGGAAAAGGAAGGCGGTGGTGAGAAAAAGGAAGGCGGTGGTGAAAAAAAAGAGGCGGTGGAATCGAAACCTGCACCACCGCCCGCAGCCGTCGAGGGTGGCGATGCGAAGCCGGTAGATGTAATGAACAAGTTAGAGTATTACGGCGGATATCCTTACCAACCACTATACTACGAGGCGCCGATGCAGTACCACCATAGCTACTCAATGGAAGCAAACCCGAGTTACTATACCCCCAACTATGGTTACGCTAACCATGGCTACACAGACCATAGATACGACGTCGTTCCAATGGACCACCACTTCCCTCACCACATGCAACAGAATCAGCCGCAGATGTTCAGCGATGAGAATCCCAACGCTTGTTCCGTCATGTAA 5130 47.95 MSQQSEEIKTTEKWKWSEMQGLELLSSDPLPPKPSPPTPKHTDPEDLSPKEEEAEHGIGRPTNGEMESSTDSKKENGGGTSGEKPEAVTSVGFGELFRFADGLDYVLMAIGSVGALVHGCSLPLFLRFFADLVNSFGSYANDVDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALDQDIQYFDTEVRTSDVIFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIYTTTIAKLSAKSQEALSEAGNIVEQTIVQIRVVLEFVGESRALQRYSSALKISQKIGYKTGFSKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLALGQSAPSMSSFAKARVAAAKIYRIIDHKPTLNSNNESGLELESVSGLVELKNVDFSYPSRPDVRILNNFSLTVPAGKTIALVGSSGSGKSTVISLIERFYDPISGEVLLDGRDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADQVEVEEAARVANAHSFIIKLPEGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLLIAHRLSTIRKADLVAVIQQGSVSEIGTHDELIAKGENGVYAKLIRMQEMAHETALNNARKSSARASSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDSSLPNYRLEKLAFKEQASSFWRLVKMNSPEWLYALLGSVGSVVCGFLSAFFAYVLSAVLSVYYNPDHAFMSREIIKYCYLLIGLSSAALLFNTIQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESAKIAARLALDANNVRSAIGDRISVIVQNTSLMLVACTAGFVLQWRLSLVLVAVFPVVVAATVLQKMFMTGFSGDLEANHAKATQLAGEAIANVRTVAAFNSEEKIVRLFSTNLEIPLRRCFWKGQIAGSGFGVAQFSLYASYALGLWYASWLVKHGLSDFSKAIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFALLDRKTEIEPDDPDATPVPDKLRGEVEFKHVDFSYPTRPDIPVFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPTSGRVMIDGKDIRKFNLKSLRKHIAMVPQEPCLFAASIYDNIAYGHESASEAEIIEAATLANAHKFISALPEGYQTFVGERGVQLSGGQKQRIAIARALVRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVSEQGSHSHLLKNYPDGCYARMQKVEEVVAAAKNEVEKKSAAAVAPAPAPAPAAVPAVAEDGAKKEDGGAITAIYKIDMHCEGCAKKIKRAVRHVKDVESVKTDCAANKLTVIGKMDVVAVKEKLELKTKKKVEIISPQPKKDGGAVAAPAEKKADEKKPEEKKAPEEKPKESTVVLKIRLHCEGCIQKIRKIILKINGVQSVALDGAKDLVTVKGTMDVKQLEPYLKDKLKRNVEIIPPKKEEPAGEKKKEESPAPAAVVAVPVAVEAGGGEKKEEAGGGGEKKEKEGGGEKKEGGGEKKEAVESKPAPPPAAVEGGDAKPVDVMNKLEYYGGYPYQPLYYEAPMQYHHSYSMEANPSYYTPNYGYANHGYTDHRYDVVPMDHHFPHHMQQNQPQMFSDENPNACSVM 1709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 971717 985387 - CmaCh14G002240.1 Cma14g00224 307207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00224 1709 Gene3D - 1471 1544 - -
Cma14g00224 1709 Gene3D - 1371 1443 - -
Cma14g00224 1709 ProSiteProfiles Heavy-metal-associated domain profile. 1379 1412 IPR006121 GO:0046872
Cma14g00224 1709 ProSitePatterns ABC transporters family signature. 571 585 IPR017871 GO:0005524
Cma14g00224 1709 ProSitePatterns ABC transporters family signature. 1226 1240 IPR017871 GO:0005524
Cma14g00224 1709 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1078 1324 IPR027417 -
Cma14g00224 1709 MobiDBLite consensus disorder prediction 39 60 - -
Cma14g00224 1709 CDD ABC_MTABC3_MDL1_MDL2 432 671 - -
Cma14g00224 1709 Gene3D ABC transporter type 1, transmembrane domain 1053 1330 IPR036640 GO:0005524|GO:0016021
Cma14g00224 1709 MobiDBLite consensus disorder prediction 1 87 - -
Cma14g00224 1709 CDD HMA 1481 1524 IPR006121 GO:0046872
Cma14g00224 1709 Gene3D ABC transporter type 1, transmembrane domain 743 1052 IPR036640 GO:0005524|GO:0016021
Cma14g00224 1709 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 108 1329 IPR039421 -
Cma14g00224 1709 SUPERFAMILY ABC transporter transmembrane region 751 1073 IPR036640 GO:0005524|GO:0016021
Cma14g00224 1709 Pfam Heavy-metal-associated domain 1478 1533 IPR006121 GO:0046872
Cma14g00224 1709 Pfam Heavy-metal-associated domain 1376 1428 IPR006121 GO:0046872
Cma14g00224 1709 SUPERFAMILY ABC transporter transmembrane region 96 413 IPR036640 GO:0005524|GO:0016021
Cma14g00224 1709 Pfam ABC transporter 1106 1254 IPR003439 GO:0005524
Cma14g00224 1709 MobiDBLite consensus disorder prediction 1447 1471 - -
Cma14g00224 1709 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 108 1329 - -
Cma14g00224 1709 MobiDBLite consensus disorder prediction 1538 1621 - -
Cma14g00224 1709 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1087 1323 IPR003439 GO:0005524
Cma14g00224 1709 CDD ABC_6TM_Pgp_ABCB1_D2_like 754 1069 - -
Cma14g00224 1709 MobiDBLite consensus disorder prediction 1538 1555 - -
Cma14g00224 1709 SUPERFAMILY HMA, heavy metal-associated domain 1474 1529 IPR036163 GO:0046872
Cma14g00224 1709 SMART AAA_5 459 645 IPR003593 -
Cma14g00224 1709 SMART AAA_5 1114 1306 IPR003593 -
Cma14g00224 1709 Pfam ABC transporter 450 599 IPR003439 GO:0005524
Cma14g00224 1709 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 423 671 IPR027417 -
Cma14g00224 1709 SUPERFAMILY HMA, heavy metal-associated domain 1369 1437 IPR036163 GO:0046872
Cma14g00224 1709 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 764 1051 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma14g00224 1709 Pfam ABC transporter transmembrane region 767 1034 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma14g00224 1709 Pfam ABC transporter transmembrane region 110 382 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma14g00224 1709 Coils Coil 1322 1342 - -
Cma14g00224 1709 CDD ABC_6TM_Pgp_ABCB1_D1_like 108 405 - -
Cma14g00224 1709 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 109 397 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma14g00224 1709 CDD HMA 1379 1415 IPR006121 GO:0046872
Cma14g00224 1709 MobiDBLite consensus disorder prediction 1438 1471 - -
Cma14g00224 1709 Gene3D ABC transporter type 1, transmembrane domain 95 686 IPR036640 GO:0005524|GO:0016021
Cma14g00224 1709 CDD ABC_MTABC3_MDL1_MDL2 1087 1322 - -
Cma14g00224 1709 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 432 668 IPR003439 GO:0005524
Cma14g00224 1709 MobiDBLite consensus disorder prediction 1570 1606 - -
Cma14g00224 1709 Gene3D - 422 672 IPR027417 -
Cma14g00224 1709 Gene3D - 1076 1327 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02622 Cma-Chr4:17895874 Cma14g00224 Cma-Chr14:971717 3.87E-85 dispersed
Cma04g02761 Cma-Chr4:18563539 Cma14g00224 Cma-Chr14:971717 0 dispersed
Cma07g00472 Cma-Chr7:2064525 Cma14g00224 Cma-Chr14:971717 1.49E-10 dispersed
Cma08g00815 Cma-Chr8:4927359 Cma14g00224 Cma-Chr14:971717 0 dispersed
Cma14g00224 Cma-Chr14:971717 Cma15g00277 Cma-Chr15:1315054 0 dispersed
Cma15g00412 Cma-Chr15:1844821 Cma14g00224 Cma-Chr14:971717 8.65E-85 dispersed
Cma06g00393 Cma-Chr6:1818620 Cma14g00224 Cma-Chr14:971717 8.15E-110 transposed
Cma06g00822 Cma-Chr6:4409506 Cma14g00224 Cma-Chr14:971717 9.78E-09 transposed
Cma14g00224 Cma-Chr14:971717 Cma02g01386 Cma-Chr2:8064405 4.48E-08 wgd
Cma14g00224 Cma-Chr14:971717 Cma20g00511 Cma-Chr20:2488187 6.41E-10 wgd
Cma14g00224 Cma-Chr14:971717 Cma03g01211 Cma-Chr3:8059097 1.72E-59 wgd
Cma14g00224 Cma-Chr14:971717 Cma06g00392 Cma-Chr6:1814067 1.54E-143 wgd
Cma14g00224 Cma-Chr14:971717 Cma07g00899 Cma-Chr7:4245460 3.97E-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00224 K05658 - csv:101220974 2344.31