Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00234 ATGCCGTTCCAGAGGATAGTAATCGCCGTCGGCCGGCCGGAGGAGGCCACCCATCCCGCCGCCCTGAAGGCCGCCTTGGCCGAGTTCATTTCCACTCTTATCTTCGTTTTCGCCGGCCAAGGTTCGGGTCTTGCTTTCTCTAAACTCACCCATAATTCTCCCACCTCCCCTGCTGCCCTCATCATCGCTTCCTTAGCTCATGGCTTTGCCCTTTTCGTCGGAGTCTCCACCGGCGCCAACATCTCCGGCGGCCACCTCAACCCCGCCGTCACTTTCGGAGCGTTAGTAGGCGGAAACATCACCCTCCTCCGCGGCATTCTCTACTGGATAGCCCAGCTCCTCGGCGCTCTTGTCGCTAACTTGTTGCTTAAGTTCGTCATCACGGACGTAGTAATTTCTGGATTCTCGCTGTCAGCAGGGGTGGGAGTGTGGGAGGCGCTCGTATTCGAGATCGTAATGACATTCGGATTAGTATACACAGTTTACGCCACCGCCATCGACCCGAAGAAGGGTGAGTTGGGAGTGATAGCACCCATCGCCATCGGTTTCATAGTGGCCGCCAACATTCTGGTGGGCGGCCCATTCACCGGCGCCTCCATGAACCCGGCCGTGGCTTTCGGACCCGCCGTCGTGGCTGGGTCTTGGGCCCAGCACTGGATCTACTGGGCCGGCCCACTGATTGGCGGCGGCTTGGCTGGCATTGTCTATGAGCTGTTCTTCATTGGGTTCACCCATGAGCCCCTCCCCGCCGCGGAGTACTAA 762 59.06 MPFQRIVIAVGRPEEATHPAALKAALAEFISTLIFVFAGQGSGLAFSKLTHNSPTSPAALIIASLAHGFALFVGVSTGANISGGHLNPAVTFGALVGGNITLLRGILYWIAQLLGALVANLLLKFVITDVVISGFSLSAGVGVWEALVFEIVMTFGLVYTVYATAIDPKKGELGVIAPIAIGFIVAANILVGGPFTGASMNPAVAFGPAVVAGSWAQHWIYWAGPLIGGGLAGIVYELFFIGFTHEPLPAAEY 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1032156 1034632 - CmaCh14G002340.1 Cma14g00234 307217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00234 253 PANTHER AQUAPORIN-8 7 252 IPR034294 -
Cma14g00234 253 PRINTS Major intrinsic protein family signature 23 42 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma14g00234 253 PRINTS Major intrinsic protein family signature 67 91 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma14g00234 253 PRINTS Major intrinsic protein family signature 104 123 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma14g00234 253 PRINTS Major intrinsic protein family signature 149 167 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma14g00234 253 PRINTS Major intrinsic protein family signature 182 204 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma14g00234 253 PRINTS Major intrinsic protein family signature 219 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma14g00234 253 CDD MIP 23 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma14g00234 253 Pfam Major intrinsic protein 16 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma14g00234 253 ProSitePatterns MIP family signature. 85 93 IPR022357 -
Cma14g00234 253 SUPERFAMILY Aquaporin-like 15 248 IPR023271 -
Cma14g00234 253 PANTHER AQUAPORIN TIP1-1 7 252 - -
Cma14g00234 253 Gene3D Glycerol uptake facilitator protein. 6 248 IPR023271 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma07g00887 Cma14g00234 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00719 Cma-Chr8:4353546 Cma14g00234 Cma-Chr14:1032156 2.00E-94 dispersed
Cma12g00256 Cma-Chr12:1299988 Cma14g00234 Cma-Chr14:1032156 2.34E-79 dispersed
Cma13g00950 Cma-Chr13:7449215 Cma14g00234 Cma-Chr14:1032156 1.79E-91 dispersed
Cma14g00234 Cma-Chr14:1032156 Cma18g00110 Cma-Chr18:540120 4.37E-87 dispersed
Cma14g00234 Cma-Chr14:1032156 Cma03g01199 Cma-Chr3:8008162 2.37E-127 wgd
Cma14g00234 Cma-Chr14:1032156 Cma07g00887 Cma-Chr7:4200653 1.88E-126 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00234 K09873 - csv:101222386 426.402