Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00246 ATGCAGGAAAGGAGCAAAAAGGGAGGTAATATTGTCACACCTGGAACAGAATACGATGGTGGTGGCCGCACACCGCTCCTGGGTCACATTGATTTGCCTTCCTTCTCTGCCCTGAAAATCTCCTATAACAACCAATGCAGCAGCTTCTTTATCAAAACCTTCTTACAACAGCATAACCCCACCACCACTCTCTTCCACGCCCCTCTCACCCGCCAACCCCAACGGCGGCCGACGGCGGTGGAGCTTCTGATGCTCCCAATTGACCAATGTATGAAGCGGGAGTTGGCTTTTGATTTGGAGGTTCAATCTCAGCTTGAGGGGGATCTTGGTCATACTCGAAGTGAGACTCTAGCTGAGGCGAGGTCGGGTAGCTATTTGGACGAGGCTGCTCCGAGTGGTAGCTGCAAGAGATTTAAAGGCGCTGTTGTGAATGGTCTGATTGTATATACTAGGGGAAGGAAGTCTCCGATCAATGTGTACAGTGGGCTGTCGGAGAATGATAATAGGAAGAAGTGTTATAGCGGGGTTGAGCAGGAAATTCTTGGAAGCTTGGAAGTTGGTAAGGGCTGTATGAATCAGGAGGTTCGAATTCAAACTATAGTTCCGGATAAATTGAATTGCAATTCAAAGAGTTCTGACTGTAAGAAAGAGTCTGATGGGGCGATGGAAAAATCTGCAGATAAGGAAGAAGGAGCGGCGGGGAATCCTGAAGTTACTTCAAAGGCAAGAAAAGTTGAGGAAAGATTGTCTAGATGGGGAATTAGGCGCTTTACACGCTCCTCATTCAGATCGAAGGTTGAGCTCGAGGAAGTCACAGTCACCCCAATTACAATAGGATCTGTTAAAGAGGAGGTTATTCCAGATGTCGGTGGAGAAACAAATGAAACAGTCAACTCAGTGTCAACTCCGAAGAACAAGTTGGAATTAAAAATGTCCAAAAAGATTGCATTGAACAAGAAGCCAATGACTGTGAGGGAGCTGTTTGATACTGGTTTGCTCGAGGGGGTACCTGTCATCTACATGGGTGTAAAGAAGGCATATGAACACGGCCTGCGCGGTACAATTAAAGATGGTGGGATTTTGTGTACATGCTCATCCTGCGATGGATGCAGAGTCATTCCTCCTTCACAATTTGAGATCCACGCTTGTAAACAATATAAACGAGCAGCACAGTATATATGTCTTGAGAACGGGAAGAGCCTACTCGACCTGGTGAGAGCATGCAAGAGAAGTAGGCAGACACTTGAGGCCACCGTACAAAGTCTGATTAGCTCTTCGCCTGAAGAAAAATGTTATACGTGTAGAGAGTGTAAAGGATGCTTTCCTTCATCCATTGGAAAAGTGGGACCTTTATGCCCATCGTGCGAGGAATCAAAGCGATCTAAGTGTACGCAGTCACTGCCAATGCCCCTCACTTCCGCAATTGATAAGAGACCGAGGTCAACAGATCCAACCACATCAAAATCATCTGGAAGTGTTCCAGTATATATCTCTTCACGATATAAGCGCAAATGGGTAACAAAAGCAAAGTCAAAACCGTCCGAATACATTTCCATCTCAAGGTCCCCCAAAAGTGCACCAATGCGTATTCCTAAAAAGAATAAGAGTGCATTGAAGATGAGGAAGAAGTCATTGAAACCAGCTTCAATGCTAAAATCCTCCCAAAGTGCTTCAAAGTGTAGTTCTTCATTAGCTAAAAATCGGTGGAAAATAACAATGAAAGATCAGAGGTTGCATAATTTGGTTTTTGAGGAAGACGGATTGCCTGATGGAACTGAAGTAGCATATTTTGCCAGGGCACAGAAACTGCTCCAGGGTTATAAGAAGGGATCTGGAATTTTATGTTGCTGCTGCAATTGTGTGGTTAGTCCTTCACAATTTGAACTTCATGCTGGCTGGTCTTCTCGCAAGAATCCTTATGCATACATTTACACATCAAATGGGATTTCTCTGCATGAATTAGCAATTTCTCTCTTGAAGGGGCGCAAGTATTCTGCTAAGGATAATGACGACTTGTGCATAATATGTCTAGATGGTGGAAATCTTTTGCTTTGTGATGGCTGCCCTAGGGCATTCCATAAAGAGTGTGCATCCTTATCAAGTGTTCCTCGTGGTGATTGGTATTGTAAATTTTGCCAGAATCTGTTCCAAAGGGAGAATCTTGTTGAGCATAATGCCAATGCTGTTGCAGCCGGAAGGGTGCATGGAATTGACCCTATTGAGCAGATAACTAAAAGATGCACTCGAATGGTTAGGAACATAGAAACAGATCTTAGTGGATGTGTGTTATGCCGTGGCTCTGATTTCAGCAAATCAGGTTTTGGTCCCCTCACAATTATACTTTGTGATCAGTGCGAGAAGGAATTTCACGTGGGCTGTTTAAAAGACCACAAAATGGCATTTCTTAAGGAATTGCCAAGAGGAAAGTGGTTTTGTAGCACAATTTGTACGAGCATACATTCTGCTCTACAGGAGTTGCTAATTCGTGGGCCAGAAAAGCTTCAGAATTCACTTTTGGATGCTGTCAATAGAAAACTTGTAGAAAATGGTTCAGACATTAAGACTAATGTTGATGTCAGTTGGAGGCTTATCAGTGGCAAAATTGCTTCACCTGAAACTCGGTTGTTGCTGTCAGAGGCCATTGCTATCTTCCACGATCGCTTTGATCCTATAGTTGATATAACAAGTGGACGCGATCTTATTCCAGCTATGGTTTATGGAAGGGATGTAGGTGGACAAGAGTTTGGAGGCATGTATTGTGCCCTATTATTTGTCAACTCATTTGTTGTATCTGCTGCAATGCTTCGTGTTTTTGGGCAAGATATTGCAGAGCTGCCCTTGGTTGCAACGAGTAATGGTAACCATGGCAAGGGCTACTTCCAAACGTTGTTTTCGTGCATCGAGAGGCTGCTAGCTTTCTTGAAAGTTAAGTGCCTTGTTCTCCCGGCTGCCGAAGAAGCTGAATCCATTTGGACTGAAAAGTTCGGTTTCAAGAGAATAAAACCAGACCAGCTCAGCAGCTATAGAAGAACTTGCTGCCAGATGTTAACTTTCAAAGGGACATCCATGCTTCGGAAAACGGTTCCTTCATTTCGGGCTGTAGGTCCTCCTAACCTCATGAGGATCATAACTAAATTCCTTTTTTGGCTCTGTTCTCTTCTCATTGTAGCTCTTTCCATCGCCATTGCCCTGCGCTCATTCCCGCCTTCCTTGACTGCCATCCTCGCCGCTGTCCGTCCTCAAGACGGTGCTTTTGGGCTTGGCATTCTCAGCAGTCTAGCGAAAGCGAGTGGTTTGGATGATCTCTTGTCTCTTGCGACTCAAATTGCATCCAAATACTATCAGTTGAAGCATAAAAAAAATTGTGATGAGAAGAAATGGAACTCTGAGTTGATATCTTTGTACAATGTTTCACTCACTTTGACAGTTGATTTGAAGGGATGTGCAAATTTTAGCAGTGTGCAAAGCGCAGTGGACGCTGTTCCTGATCGTGCCTCTTCAAGGACCCTTATCCTAATTGACTCTGGAATCTACAGGGAGAAGGTGGTGGTAGAAGCCAACAAGACAAACTTGATAATTCAAGGCCAAGGCTACCTGAACACTACAATAGAATGGAATGACACTGCCAATTCCACGGGAGGTACCCCTTACAGTTCTTCAGTCACAATCTTTCCCTCAAACTTCATTGCCTTCAACATCAGCTTCAAAAACACAGCTCCACAGCCAAATCCAGGGACTGTTGGAGGACAAGCAGTGGCACTTCGAATTGTAGGAGATGAAGCTGCTTTCTATGGATGTGGGTTTTATGGAGCTCAAGACACACTCTATGATGACAAGGGAAGACATTACTTTAAAGAATGTTTCATTCAAGGGTCCATTGATTTCATCTTTGGCAATGCTCGATCGCTCTATGATGGTTGTAGCATAAAGTCAATAGCAAAGGAAATGATGAATGGCGGGGTGAGTGGAGCCATCACAGCACAAGGAAGGCAAACAAGAATGGAGGAAACTGGTTTTGCCTTCATCAACTGCACCATCAATGGCTCTGGGAAGGTGTGGCTCGGCCGTGCCTGGGGCGTCTCTGCCACTGTCATCTTCTCTAAAACATACATGACCGACGTGGTGGCTGCTGGCGGATGGAATGACTGGGGAGACCCTTCAAGAGATAAGAGTGTGTTGTTTGGGGAGTATGATTGCTCTGGAGAAGGAGCAAATTACAGCTCGAGAGTGCCATACTCAAAGCAGCTGAATCAAGTGGAGGCTGAGCCATACATGGATGTTTCCTACATTGATGGAGATCAATGGCTGATCCATCAACAAATTACCCTTTTCTCTTCTATTTAA 4344 44.59 MQERSKKGGNIVTPGTEYDGGGRTPLLGHIDLPSFSALKISYNNQCSSFFIKTFLQQHNPTTTLFHAPLTRQPQRRPTAVELLMLPIDQCMKRELAFDLEVQSQLEGDLGHTRSETLAEARSGSYLDEAAPSGSCKRFKGAVVNGLIVYTRGRKSPINVYSGLSENDNRKKCYSGVEQEILGSLEVGKGCMNQEVRIQTIVPDKLNCNSKSSDCKKESDGAMEKSADKEEGAAGNPEVTSKARKVEERLSRWGIRRFTRSSFRSKVELEEVTVTPITIGSVKEEVIPDVGGETNETVNSVSTPKNKLELKMSKKIALNKKPMTVRELFDTGLLEGVPVIYMGVKKAYEHGLRGTIKDGGILCTCSSCDGCRVIPPSQFEIHACKQYKRAAQYICLENGKSLLDLVRACKRSRQTLEATVQSLISSSPEEKCYTCRECKGCFPSSIGKVGPLCPSCEESKRSKCTQSLPMPLTSAIDKRPRSTDPTTSKSSGSVPVYISSRYKRKWVTKAKSKPSEYISISRSPKSAPMRIPKKNKSALKMRKKSLKPASMLKSSQSASKCSSSLAKNRWKITMKDQRLHNLVFEEDGLPDGTEVAYFARAQKLLQGYKKGSGILCCCCNCVVSPSQFELHAGWSSRKNPYAYIYTSNGISLHELAISLLKGRKYSAKDNDDLCIICLDGGNLLLCDGCPRAFHKECASLSSVPRGDWYCKFCQNLFQRENLVEHNANAVAAGRVHGIDPIEQITKRCTRMVRNIETDLSGCVLCRGSDFSKSGFGPLTIILCDQCEKEFHVGCLKDHKMAFLKELPRGKWFCSTICTSIHSALQELLIRGPEKLQNSLLDAVNRKLVENGSDIKTNVDVSWRLISGKIASPETRLLLSEAIAIFHDRFDPIVDITSGRDLIPAMVYGRDVGGQEFGGMYCALLFVNSFVVSAAMLRVFGQDIAELPLVATSNGNHGKGYFQTLFSCIERLLAFLKVKCLVLPAAEEAESIWTEKFGFKRIKPDQLSSYRRTCCQMLTFKGTSMLRKTVPSFRAVGPPNLMRIITKFLFWLCSLLIVALSIAIALRSFPPSLTAILAAVRPQDGAFGLGILSSLAKASGLDDLLSLATQIASKYYQLKHKKNCDEKKWNSELISLYNVSLTLTVDLKGCANFSSVQSAVDAVPDRASSRTLILIDSGIYREKVVVEANKTNLIIQGQGYLNTTIEWNDTANSTGGTPYSSSVTIFPSNFIAFNISFKNTAPQPNPGTVGGQAVALRIVGDEAAFYGCGFYGAQDTLYDDKGRHYFKECFIQGSIDFIFGNARSLYDGCSIKSIAKEMMNGGVSGAITAQGRQTRMEETGFAFINCTINGSGKVWLGRAWGVSATVIFSKTYMTDVVAAGGWNDWGDPSRDKSVLFGEYDCSGEGANYSSRVPYSKQLNQVEAEPYMDVSYIDGDQWLIHQQITLFSSI 1447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1065408 1075584 - CmaCh14G002460.1 Cma14g00246 307229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00246 1447 ProSitePatterns Zinc finger PHD-type signature. 673 712 IPR019786 -
Cma14g00246 1447 Gene3D - 1134 1446 IPR012334 -
Cma14g00246 1447 Pfam PHD-finger 673 714 IPR019787 -
Cma14g00246 1447 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 91 1033 - -
Cma14g00246 1447 SUPERFAMILY Pectin lyase-like 1137 1436 IPR011050 -
Cma14g00246 1447 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 910 1001 IPR016181 -
Cma14g00246 1447 SMART PHD_3 672 713 IPR001965 -
Cma14g00246 1447 SMART PHD_3 760 816 IPR001965 -
Cma14g00246 1447 MobiDBLite consensus disorder prediction 208 245 - -
Cma14g00246 1447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 756 819 IPR013083 -
Cma14g00246 1447 MobiDBLite consensus disorder prediction 517 548 - -
Cma14g00246 1447 SUPERFAMILY FYVE/PHD zinc finger 658 714 IPR011011 -
Cma14g00246 1447 SUPERFAMILY FYVE/PHD zinc finger 757 814 IPR011011 -
Cma14g00246 1447 CDD PHD1_AIRE 672 712 - -
Cma14g00246 1447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 659 752 IPR013083 -
Cma14g00246 1447 MobiDBLite consensus disorder prediction 478 493 - -
Cma14g00246 1447 MobiDBLite consensus disorder prediction 209 231 - -
Cma14g00246 1447 ProSitePatterns Pectinesterase signature 2. 1289 1298 IPR033131 -
Cma14g00246 1447 MobiDBLite consensus disorder prediction 469 493 - -
Cma14g00246 1447 ProSiteProfiles Zinc finger PHD-type profile. 670 715 IPR019787 -
Cma14g00246 1447 PANTHER AUTOIMMUNE REGULATOR 91 1033 - -
Cma14g00246 1447 MobiDBLite consensus disorder prediction 1 22 - -
Cma14g00246 1447 Pfam Tify domain binding domain 353 408 IPR032308 -
Cma14g00246 1447 Pfam Tify domain binding domain 606 656 IPR032308 -
Cma14g00246 1447 Pfam Pectinesterase 1142 1433 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00246 Cma-Chr14:1065408 Cma15g01122 Cma-Chr15:7148399 2.76E-88 dispersed
Cma17g00104 Cma-Chr17:506504 Cma14g00246 Cma-Chr14:1065408 1.38E-65 dispersed
Cma20g00425 Cma-Chr20:2015300 Cma14g00246 Cma-Chr14:1065408 1.67E-06 dispersed
Cma14g01588 Cma-Chr14:11920033 Cma14g00246 Cma-Chr14:1065408 2.63E-72 transposed
Cma16g00496 Cma-Chr16:2537784 Cma14g00246 Cma-Chr14:1065408 3.27E-126 transposed
Cma14g00246 Cma-Chr14:1065408 Cma02g01372 Cma-Chr2:8001240 0 wgd
Cma14g00246 Cma-Chr14:1065408 Cma20g00533 Cma-Chr20:2550542 6.69E-08 wgd
Cma14g00246 Cma-Chr14:1065408 Cma06g00412 Cma-Chr6:1905877 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36177 PF01095 Pectinesterase 5.70E-63 CL0268 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00246 - - csv:101203549 1556.58