Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00250 ATGCCCACATGCCCTTCCCCCGCCGCCCAACCCGCTGCCCTGTCTTCCTTGCTCTTCTGGGGATCTCAAGAGGAACAGGTGCGTCCTCCACAAGATGTTACCACACAATCATGGTATCCACCCTCTGTTAGCTCCTCTCGCCCTGCAACCCCAGGTAGCACCTCCTCCAATCATTCCAGTTCACATAGGCTTTCTGGTAGGCCACAGTCTCCATCACACGTTTCCCCTGCTGAAGCTGCCGGCATTATTTCTGCTTTGAAGGACAAAAGTGTTGATGAGTTGCGAAAGCTTTTGTCAGACAAGGATGCATATAATCAGTTCCTCCTTTCACTTGACCAGGTCCAAACTCAGAACAATCTAAAAGATGAGCTGCGTAAGGAAACTCTTCAGCTTGCTAGTGAGAACTTGGAAAAGGAACCACGCATCATGGAACTCAGAAACCAGTGCAGAATTATTCGGACAACTGAACTGGCAGCAGCCGAGGAGAAGCTAAACGAACTTGACCGAAAGAAAGAGGACATTATGAAGCTCTGTTCTCCTGCTTCACTTCTCAAAAGGCTTCAAGAGAGAATGAAAGAGACAGAAGAGGAGTCGGACAATGTGCACATGCAGCTCCTTGAGAGAGAGATAGATTTGAGTTCATTTACTCATAAATACAAGAGGCTGCGTATGAATTACCACCGGCGAGCTCTCATTCAACTTGCTGCCAGAACCACCTGA 720 48.33 MPTCPSPAAQPAALSSLLFWGSQEEQVRPPQDVTTQSWYPPSVSSSRPATPGSTSSNHSSSHRLSGRPQSPSHVSPAEAAGIISALKDKSVDELRKLLSDKDAYNQFLLSLDQVQTQNNLKDELRKETLQLASENLEKEPRIMELRNQCRIIRTTELAAAEEKLNELDRKKEDIMKLCSPASLLKRLQERMKETEEESDNVHMQLLEREIDLSSFTHKYKRLRMNYHRRALIQLAARTT 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1090696 1095130 + CmaCh14G002500.1 Cma14g00250 307233

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00250 239 ProSiteProfiles VPS37 C-terminal domain profile. 161 239 IPR009851 -
Cma14g00250 239 Gene3D Helix hairpin bin 163 233 IPR029012 -
Cma14g00250 239 Coils Coil 184 204 - -
Cma14g00250 239 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37A 19 238 - -
Cma14g00250 239 Pfam Modifier of rudimentary (Mod(r)) protein 87 231 IPR009851 -
Cma14g00250 239 SUPERFAMILY Endosomal sorting complex assembly domain 176 229 IPR037202 -
Cma14g00250 239 MobiDBLite consensus disorder prediction 23 76 - -
Cma14g00250 239 Coils Coil 157 177 - -
Cma14g00250 239 Coils Coil 117 137 - -
Cma14g00250 239 MobiDBLite consensus disorder prediction 23 72 - -
Cma14g00250 239 PANTHER WILLIAMS-BEUREN SYNDROME CRITICAL REGION PROTEIN-RELATED 19 238 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00250 K12185 VPS37; ESCRT-I complex subunit VPS37 - csv:101204280 379.022
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00421 Cma14g00250 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00250 Cma-Chr14:1090696 Cma06g00421 Cma-Chr6:1945861 1.52E-127 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1093 . . . . . . . Bma10g00060 Cmo06g00418 Cmo14g00241 . . . . . . Cpe08g01065 . . . . . . . . . . . . . . . Cone10ag0198 Cone13ag1232 Cone19ag1218 . . . Cme04g02462 Blo07g01375 Blo09g00528 Bda03g01698 . . . . . Sed02g0593 . . Cma06g00421 Cma14g00250 Car06g00363 Car14g00228 Cpe03g00217 . Bhi11g02022 Tan08g1814 Cmetu04g0330 Lac10g2944 Hepe05g0313 . . Cla10g01867 Cam10g1924 Cec10g1979 Cco10g1951 Clacu10g1941 Cmu10g2685 Cre10g2073 Lsi03g01963 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006129 0 1 2 1 0 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g00250 Cma_Chr14 FPKM 32.736111 32.816032 24.751207 29.15616 11.697037 11.888186 11.270801 21.587378 23.214594 22.076746