Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00252 ATGGCAGATCCGGCGGCCCCAGACTCTACCACCAGCAACGCCTCTTCCGCCGCCTCCGCCGATGCTGCTACTACCCCACCCGTAGTTACACCAGTTCCTAAACGTGCTTGGGGCGATGAAGAAGACGATGATGTAGGCGATGCTGGAGATTCATCCTCTGCGCCTTCCGAGTACATGGAATCTCTTAAAATCCAAGACGAAAAAACTCTTGAAGAACCCGAAGACTCTAACATCACAGCGGTGACAACTGGTGATACTCCATATTCATCAGCCAGTACTTTTGAGGATCTGAATCTATCTCCAGAGATTTTGAAGGGGTTGTATGTTGAGATGAAATTCCAAAAGCCAAGTAAAATTCAAGCTATAAGTCTACCTATGATCTTGACTCCTCCGTACAAAGATTTAATAGCTCAAGCACACAATGGTTCTGGAAAAACTACTTGTTTTGTGCTTGGGATGTTGAGTCGCGTTGATGTGAACTTGAAGGCTCCTCAGGCATTTTGCATATGTCCTACAAGGGAGTTAGCCATGCAGAATATTGAAGTTCTTAAGAAAATGGGAAAATACACTGGGATAACTTCAGAGTGTGCAGTTCCTGCTGACAGTGCTAACTATGTACCTATGTCAAAGCGACCACCAATAACTGCACAAGTTGTGATTGGAACTCCTGGCACAATAAAGAAATGGATGTCATCGAGGAAGCTGGGAGTAAGTTGCGTGAAGATTCTTGTTTTTGATGAGGCTGATCATATGCTTAGCGAGGATGGCTTTAGGGATGATTCGTTGAGAATCATGAGGGACATTGAGAAAAGTAGCCCTCATTGCCAGGTGCTTCTGTTCTCTGCTACATTCGATGAGACTGTTAAAAACTTTGTCTCTAGGGTTGTCAAAGACTACAACCAACTTTTTGTTAAGAAGGAAGAACTATCCCTGGAGGGTGTGAAGCAATACAAGGTGATATGTCCAGATGAATTAGCGAAAATTCGGGTCATAAAAGATAGGATTTTTGAACTTGGAGAGAAATTGGGTCAGACAATTATATTTGTGCGCACAAGAAACAGTGCAAGCATGTTACATAAGGCACTGGTTGATTATGGTTATGATGTGACTACCATTCAAGGGGCACTGACGACTGAACATAGAGACAAAATAATAAAAGAGTTTAAGGATGGTTTGACCAAAGTTCTCATTTCGACTGACCTTCTATCTCGAGGGTTTGACCAGCAACAGGTCAATCTAGTTATCAATTATGATCTTCCTCTGAAATATGAATCTTCTTCAGAAGCGATGAAATTCAGATCTTCCTCACAATCTGAGCCTAACTATGAGGTGTACCTCCATAGAATTGGTCGGGCAGGTCGTTTTGGGCGCAAGGGAGCTGTGTTTAACTTGCTCTGTGGTGATGTGGAGATGATGCGAATGGACAAAATCCAGAACCATTTTAACTCTGAAGTAACAGAGGTTCGGGACTCTGATGAGGACATTCAAGCAGCCTTGAAAACTGCTGGATTGCTTTGA 1518 43.21 MADPAAPDSTTSNASSAASADAATTPPVVTPVPKRAWGDEEDDDVGDAGDSSSAPSEYMESLKIQDEKTLEEPEDSNITAVTTGDTPYSSASTFEDLNLSPEILKGLYVEMKFQKPSKIQAISLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDVNLKAPQAFCICPTRELAMQNIEVLKKMGKYTGITSECAVPADSANYVPMSKRPPITAQVVIGTPGTIKKWMSSRKLGVSCVKILVFDEADHMLSEDGFRDDSLRIMRDIEKSSPHCQVLLFSATFDETVKNFVSRVVKDYNQLFVKKEELSLEGVKQYKVICPDELAKIRVIKDRIFELGEKLGQTIIFVRTRNSASMLHKALVDYGYDVTTIQGALTTEHRDKIIKEFKDGLTKVLISTDLLSRGFDQQQVNLVINYDLPLKYESSSEAMKFRSSSQSEPNYEVYLHRIGRAGRFGRKGAVFNLLCGDVEMMRMDKIQNHFNSEVTEVRDSDEDIQAALKTAGLL 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1097817 1101014 - CmaCh14G002520.1 Cma14g00252 307235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00252 505 Pfam DEAD/DEAH box helicase 118 290 IPR011545 GO:0003676|GO:0005524
Cma14g00252 505 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 92 121 IPR014014 GO:0003724
Cma14g00252 505 Pfam Helicase conserved C-terminal domain 327 456 IPR001650 -
Cma14g00252 505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 468 IPR027417 -
Cma14g00252 505 SMART helicmild6 356 456 IPR001650 -
Cma14g00252 505 Gene3D - 309 496 IPR027417 -
Cma14g00252 505 MobiDBLite consensus disorder prediction 1 92 - -
Cma14g00252 505 MobiDBLite consensus disorder prediction 1 23 - -
Cma14g00252 505 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 69 486 - -
Cma14g00252 505 Gene3D - 72 308 IPR027417 -
Cma14g00252 505 CDD DEADc_DDX19_DDX25 99 302 - -
Cma14g00252 505 SMART ultradead3 112 317 IPR014001 -
Cma14g00252 505 PANTHER DEAD-BOX HELICASE DBP80 69 486 - -
Cma14g00252 505 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 330 496 IPR001650 -
Cma14g00252 505 MobiDBLite consensus disorder prediction 75 92 - -
Cma14g00252 505 CDD SF2_C_DEAD 314 465 - -
Cma14g00252 505 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 126 302 IPR014001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00252 Cma-Chr14:1097817 Cma05g00423 Cma-Chr5:1908259 2.62E-64 dispersed
Cma14g00252 Cma-Chr14:1097817 Cma01g00052 Cma-Chr1:206398 5.83E-64 transposed
Cma14g00252 Cma-Chr14:1097817 Cma17g00712 Cma-Chr17:5877920 1.71E-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00252 K18655 - csv:101222195 853.588