Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00253 ATGCGGGCCTTCTCTTCCTCGATCTTGGCCTTAGCTGCCGTTGTTCTGCCGGCGGCGGTGGTTTACTGCGGCTTCCCCGTCCCACTTCTCTCTCTGCAGAGGGCCTTCCCTTCTTCTCGCACTGTCCAACTCGAAACCCTTAGAGCTCGGGACCGACTAAGGCATGCCAGAATGTTGCAAGGTGTCGTCGACTTCTCTGTCGAAGGTTCTTCCGATCCATTGCTCATCGGGCTTTACTTTACGAAAGTCAAATTGGGCACTCCCCCGAGGGAATTTACGGTGCAGATCGACACTGGAAGTGATATTTTGTGGGTAAACTGCAATTCCTGCAATGGATGCCCCACATCAAGTGGACTTGGAATTCAACTAAATTTCTTTGATGCTTCCATCTCATCAAGTTCTTCACTCATCTCCTGTTCTGACCCAATATGCAATTCTGCATTCCAAACAACTGCAACGCAGTGTCTATCTCAGAGTAAACAATGCAGTTACACCTTTCAGTATGGTGATGGAAGTGGAACATCAGGTTATTATGTATCTGAGTCCATGTACTTCGACATGGTTATGGGACCTTCTATGATTGTTAACTCTTCAGCTACTGTTGTTTTTGGTTGTAGCACCTATCAGTCAGGAGACTTGACTAAATCAGACCATGCAATTGATGGCATTTTTGGATTCGGCCCTGGGGATTTGTCTGTGATATCACAGTTGTCAGCTCGAGGGATAACCCCTAAAGTATTTTCCCATTGTTTAAAAGGAGAAGGAAATGGTGGCGGTATATTGGTTCTTGGTGAGGTTTTGGAGCCAGGCATTGTGTATAGCCCACTTGTGCCCTCTCAGCCTCACTATAACTTATACCTGCAAAGCATTGCTGTCAATGGTCAGACACTGTCAATTGATCCATCTGTGTTTGCAACATCAAACAATCGAGGAACTATTGTAGACTCTGGGACAACATTGGCTTACCTTGTTGAAGAAGCTTATACTCCATTTGTCAACGCTATAACTGCTGCTGTTTCCCAATCTGTGACTCCTACTATTTCAAAGGGCAACCAGTGTTATCTAGTATCCACCAGTGTAGGCGAGATATTTCCTCTGGTTAGCTTAAACTTCGCGGGCAGTGCATCTATGGTGTTAAAACCTGAACAATATCTTATGCATCTTGGCTTTTATGATGGTGCTGCATTATGGTGTATTGGTTTTCAGAAAGTTCAGGAAGGAGTAACGATTTTAGGAGATATAGTTATGAAAGACAAGATATTTGTATATGACTTGGCGCGCCAGAGAATTGGGTGGGCAAATTATGATTGTTCCCAAGCTGTTAACGTATCAGTCACATCTGAGAAGAACAGGTTCGAGAATGCAGGACAGTTTAGCGTGAGCAGTTCGACTCGAGATAAACTCCTCCAATCATCAACTATGGAAGCATTAGCAGTGTTAGTGAGTCTTAACTTCAGGAGTTCGCGATTTCCTTTTGTAATGGCGGCGGTTTCTCAGACGGCGGTTCATGCCTCTCCGGCTTCGCTCTATGTTGGCGACCTTCATCCTGATGTCACTGATGGTCAGCTCTTTGATTCTTTCTCTGGATTCAAGAGCCTCGCCTCTGTTCGTATCTGTAGAGATTCCGCCACTGGACGCTCTCTCTCTTATGGCTACGTCAATTTCATGTCTCCGCAAGACGCAACCAACGCGATGGAGGCAATGAATCACAGAATGCTCAATGGAAGAGCGATTCGAGTCATGTGGTCACACCGCGATCATGGTGCAAGAAAAAGTGGAATTGGAAACGTGTTTGTTAAGAACTTGAGCGATTCAATCAATGGTTTAGGACTTCAAGAGCTATTTAAGAAATTTGGAAATGTTCTGTCCAGCAAAGTAGTCACATCCGATGATGGGAAGAGCAAAGGATACGGCTTTGTTCAATTTGAGTCTGAGGATTCCGCAAAAACTGCCATAGAGTCACTGAATGGTTTTACCATTGGGGATAAGCAGATATATGTCGGAAAGTTTATCTGTAAGAGTGAACGAGTCTTGGCCAATCCTGATTTTAAATACACCAATTTGTATGTGAAAAATCTTGACTCAGAAATCGGGGAAGAGCATTTGCAGGAAAAGTTTTCTGAGTTTGGAAAAATTTCCAGCATGATTATTTCAAGGGATGAGAATGGAATGTCAAGAGGTTTTGGTTTTATAAACTTTGTGAACTCTGATGATGCGAAACAGGCATTAGAAGCACTTAATGGATCGCAACTGGGTTCTAAGCGTATCTACATTGCACGGGCACAGAAGAAGACAGAGCGTGAGGAAGTATTACGTCGACGTGACGAAGAGAAATGTAAAGAGCAGGTCTTAAAATATAAGGGCTCAAATGTGTATGTGAAGAACATTGATGATGGTGTTACTGATGAAGAACTAAGGGTGCTTTTCAGTCCTTGTGGGACCATCACTTCATCAAAACTTATGCGAGATGACAAGGGAATAAACAAAGGGTTTGGATTTGTCTGCTTCTCTAATCCTGACGAAGCTAAAAGAGCCGTGAACAGTTTGCAAGGATATATGTTCCACGGGAAGCCACTCTATTTGGCTATAGCACAAAGAAAAGAGGATAGACAAATGCAACTGAGGCTTCAGTTTGCACAACGGATGGCAGCGATGCTAGGGCAGTCAACACTTTTTCCGGGTGGATACCCAGCACCAGGTGTTGTCCCACAAGTACCATCTCGTTCAGGATTGACGTTTCAGCCTTTAGGAATGAGCCCTGCGTGGAGACCTAATGCTTTTACATCTCCTGCAAGACCTGCTTTTCAACCTACACCTGTACCTCTTATTCCGAATGCTTCGAGGCAACCGAGGCAAAACAGAGGCAAAATAAATGGACCAATGCTTTCTCATCAAAATGGTGTCCAATCTGTCTTTTATATGCACAATTCACAAGATGCCCATCAACCAGGAGTTACTGATAAATCATCCGGCAATCTGCAGTTATCATATGGTGTCGCCCATGTGAAAGAAACAAAACTTCTGGAGTCTCAGCTGCTGCTTTTAATTCTGCTGGATCCTTTCTTCCTCTCCCCCAGACCAACAAAAACAGATCCTTGGGGAGCATCTCTACCCCCTTGTCCAAAAATGCAAGCCGGCTGCGAAGATTACTGGGATGCTTCTGGAGATGAACAACTCGGAATTACTGCTTCTGTTAGAGTCACCTGA 3207 44.31 MRAFSSSILALAAVVLPAAVVYCGFPVPLLSLQRAFPSSRTVQLETLRARDRLRHARMLQGVVDFSVEGSSDPLLIGLYFTKVKLGTPPREFTVQIDTGSDILWVNCNSCNGCPTSSGLGIQLNFFDASISSSSSLISCSDPICNSAFQTTATQCLSQSKQCSYTFQYGDGSGTSGYYVSESMYFDMVMGPSMIVNSSATVVFGCSTYQSGDLTKSDHAIDGIFGFGPGDLSVISQLSARGITPKVFSHCLKGEGNGGGILVLGEVLEPGIVYSPLVPSQPHYNLYLQSIAVNGQTLSIDPSVFATSNNRGTIVDSGTTLAYLVEEAYTPFVNAITAAVSQSVTPTISKGNQCYLVSTSVGEIFPLVSLNFAGSASMVLKPEQYLMHLGFYDGAALWCIGFQKVQEGVTILGDIVMKDKIFVYDLARQRIGWANYDCSQAVNVSVTSEKNRFENAGQFSVSSSTRDKLLQSSTMEALAVLVSLNFRSSRFPFVMAAVSQTAVHASPASLYVGDLHPDVTDGQLFDSFSGFKSLASVRICRDSATGRSLSYGYVNFMSPQDATNAMEAMNHRMLNGRAIRVMWSHRDHGARKSGIGNVFVKNLSDSINGLGLQELFKKFGNVLSSKVVTSDDGKSKGYGFVQFESEDSAKTAIESLNGFTIGDKQIYVGKFICKSERVLANPDFKYTNLYVKNLDSEIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNSDDAKQALEALNGSQLGSKRIYIARAQKKTEREEVLRRRDEEKCKEQVLKYKGSNVYVKNIDDGVTDEELRVLFSPCGTITSSKLMRDDKGINKGFGFVCFSNPDEAKRAVNSLQGYMFHGKPLYLAIAQRKEDRQMQLRLQFAQRMAAMLGQSTLFPGGYPAPGVVPQVPSRSGLTFQPLGMSPAWRPNAFTSPARPAFQPTPVPLIPNASRQPRQNRGKINGPMLSHQNGVQSVFYMHNSQDAHQPGVTDKSSGNLQLSYGVAHVKETKLLESQLLLLILLDPFFLSPRPTKTDPWGASLPPCPKMQAGCEDYWDASGDEQLGITASVRVT 1068
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1102157 1111915 + CmaCh14G002530.1 Cma14g00253 307236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00253 1068 ProSiteProfiles Peptidase family A1 domain profile. 79 433 IPR033121 -
Cma14g00253 1068 SUPERFAMILY Acid proteases 76 441 IPR021109 -
Cma14g00253 1068 Pfam Xylanase inhibitor C-terminal 282 433 IPR032799 -
Cma14g00253 1068 SUPERFAMILY RNA-binding domain, RBD 507 673 IPR035979 GO:0003676
Cma14g00253 1068 CDD RRM4_I_PABPs 788 866 - -
Cma14g00253 1068 PANTHER POLYADENYLATE-BINDING PROTEIN 501 995 - -
Cma14g00253 1068 Gene3D Acid Proteases 266 445 IPR021109 -
Cma14g00253 1068 CDD RRM2_I_PABPs 593 669 IPR045305 -
Cma14g00253 1068 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 595 667 IPR000504 GO:0003723
Cma14g00253 1068 Gene3D - 597 676 IPR012677 -
Cma14g00253 1068 SMART rrm1_1 790 862 IPR000504 GO:0003723
Cma14g00253 1068 SMART rrm1_1 596 668 IPR000504 GO:0003723
Cma14g00253 1068 SMART rrm1_1 508 581 IPR000504 GO:0003723
Cma14g00253 1068 SMART rrm1_1 687 759 IPR000504 GO:0003723
Cma14g00253 1068 Gene3D - 767 875 IPR012677 -
Cma14g00253 1068 Gene3D - 677 766 IPR012677 -
Cma14g00253 1068 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 507 993 IPR006515 GO:0003723
Cma14g00253 1068 PRINTS Pepsin (A1) aspartic protease family signature 312 323 IPR001461 GO:0004190|GO:0006508
Cma14g00253 1068 PRINTS Pepsin (A1) aspartic protease family signature 409 424 IPR001461 GO:0004190|GO:0006508
Cma14g00253 1068 PRINTS Pepsin (A1) aspartic protease family signature 85 105 IPR001461 GO:0004190|GO:0006508
Cma14g00253 1068 Pfam Xylanase inhibitor N-terminal 79 264 IPR032861 -
Cma14g00253 1068 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 597 665 IPR000504 GO:0003723
Cma14g00253 1068 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 509 579 IPR000504 GO:0003723
Cma14g00253 1068 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 791 859 IPR000504 GO:0003723
Cma14g00253 1068 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 688 756 IPR000504 GO:0003723
Cma14g00253 1068 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 686 763 IPR000504 GO:0003723
Cma14g00253 1068 SMART rrm2_1 687 759 IPR003954 GO:0003676
Cma14g00253 1068 SMART rrm2_1 603 668 IPR003954 GO:0003676
Cma14g00253 1068 SMART rrm2_1 508 581 IPR003954 GO:0003676
Cma14g00253 1068 SMART rrm2_1 790 862 IPR003954 GO:0003676
Cma14g00253 1068 SUPERFAMILY RNA-binding domain, RBD 685 869 IPR035979 GO:0003676
Cma14g00253 1068 Gene3D Acid Proteases 63 265 IPR021109 -
Cma14g00253 1068 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 507 585 IPR000504 GO:0003723
Cma14g00253 1068 CDD pepsin_A_like_plant 79 437 IPR034161 -
Cma14g00253 1068 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 789 866 IPR000504 GO:0003723
Cma14g00253 1068 Gene3D - 495 596 IPR012677 -
Cma14g00253 1068 PANTHER RNA BINDING PROTEIN 501 995 - -
Cma14g00253 1068 CDD RRM1_I_PABPs 508 586 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00849 Cma-Chr10:4088708 Cma14g00253 Cma-Chr14:1102157 2.63E-86 dispersed
Cma14g00253 Cma-Chr14:1102157 Cma19g00596 Cma-Chr19:6565911 2.72E-19 dispersed
Cma14g00253 Cma-Chr14:1102157 Cma02g01366 Cma-Chr2:7970258 0 wgd
Cma14g00253 Cma-Chr14:1102157 Cma20g00538 Cma-Chr20:2593032 1.42E-174 wgd
Cma14g00253 Cma-Chr14:1102157 Cma06g00425 Cma-Chr6:1954931 0 wgd
Cma14g00253 Cma-Chr14:1102157 Cma07g00884 Cma-Chr7:4171047 3.69E-173 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00253 - K13126 csv:101203793 850.506