Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00256 ATGGCATATTGGCTTTTCAGGACTGAGCTGTGTCGCTTCAGTGGCTCCAAGATATACCCAGGGAGGGGCATCAGATTTATCCGGGCTGATTCTCAGGTGTTTCTCTTTGCTAACTCAAAATGCAAGAGGTATTTCCACAACCGGTTGAAGCCTTCGAAGCTTACCTGGACAGCCATGTATAGGAAGCAGCATAAGAAGGATATTGCTCAAGAGGCGGTGAAGAAGAGGAGACGTACCACCAGGAAGCCGTACTCTAGGTCCATTGTTGGTGCAACTTTGGAAGTCATCCAGAAGAAGAGAGCCGAAAAGCCAGAAGTGCGTGATGCTGCCAGAGAAGCTGCTCTGCGGGAAATTAAGGAAAGAATCAAGAAAACAAAGGACGAAAAGAAGGCCAAGAAAGCGGAAGTGTTAGCCAAGTCCCAGAAGGCGCCAGGTAAGGGTAACGTTGCGAAGGGACCTGCATCCAAAGGTCCAAAGCTCGGTGGTGGCGGGGGGAAGCGTTGA 504 50.2 MAYWLFRTELCRFSGSKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1117867 1119189 + CmaCh14G002560.1 Cma14g00256 307239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00256 167 MobiDBLite consensus disorder prediction 121 167 - -
Cma14g00256 167 CDD Ribosomal_L24e_L24 7 59 IPR000988 -
Cma14g00256 167 Pfam Ribosomal protein L24e 7 70 IPR000988 -
Cma14g00256 167 PANTHER 60S RIBOSOMAL PROTEIN L24 6 167 IPR000988 -
Cma14g00256 167 PANTHER 60S RIBOSOMAL PROTEIN L24 6 167 - -
Cma14g00256 167 ProSitePatterns Ribosomal protein L24e signature. 13 30 IPR023442 -
Cma14g00256 167 Gene3D Ribosomal protein L24e 6 67 IPR038630 -
Cma14g00256 167 SMART 4TRASH 11 49 IPR011017 -
Cma14g00256 167 MobiDBLite consensus disorder prediction 121 139 - -
Cma14g00256 167 MobiDBLite consensus disorder prediction 67 86 - -
Cma14g00256 167 Gene3D - 72 142 - -
Cma14g00256 167 Coils Coil 115 139 - -
Cma14g00256 167 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 9 61 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma07g00875 Cma14g00256 CCT
Cma07g00875 Cma14g00256 ECH
Cma06g00430 Cma14g00256 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00159 Cma-Chr9:682389 Cma14g00256 Cma-Chr14:1117867 3.12E-19 dispersed
Cma14g00256 Cma-Chr14:1117867 Cma03g01183 Cma-Chr3:7903578 3.61E-82 wgd
Cma14g00256 Cma-Chr14:1117867 Cma06g00430 Cma-Chr6:1988523 4.19E-90 wgd
Cma14g00256 Cma-Chr14:1117867 Cma07g00875 Cma-Chr7:4112460 1.90E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00256 K02896 - csv:101206122 246.128