Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00260 ATGGAACCCAATAGTTTAGGCGGCGGCGGCGGTGCTAGTGGAGGGATGTTTCCCGGCATTAGTTCGTCAATGCTGGGATTGGAATTGCCACTTCATCAAATCCCATCAAATCCTCACCAATTACACCACCCCCCAATGGTGTCATATGTCCCACACGAGGCCCACCACCAACAACAACCGCCGCCGGCCGCAGTGAAATGCCCATACCCGGCGAAGCCTAAGCCGCAGCAGTCAAATGTCAGCGACGAGGAGGAGCAGGGATTAGCGGACGACAGCAACAGCGACGCCAAGAAGAAAATCTCGCCGTGGCAGAGGATGAAATGGACGGACATGATGGTCCGGCTGCTGATCACGGCGGTGTTTTACATCGGCGACGAAGGTGGGTCGGAGCCGATGGACCATGCCAGCAAGAAAAAACCAGTGGGGCTTCTGCAAAAGAAGGGGAAATGGAAATCCGTATCCAGAGCAATGATGGAAAAAGGATTCTACGTTTCACCGCAGCAATGCGAAGACAAATTTAACGATTTAAATAAAAGATACAAACGAGTTAACGACATTTTGGGGAAGGGCACCGCCTGCAGAGTCGTCGAGAATCACACCCTATTGGAATCAATGGAATTAACACCGAAAGTGAAAGAAGAAGTCCGAAAATTACTCAATTCTAAACATCTTTTCTTCAGAGAAATGTGCGCTTACCACAACACTTGCCGTCATGGCGCCGGCAACAGCGGCGGCGGCGGTGCCAATACCTTACCGGAGACGGGGGCAGAACCATCCCACCTTCCACAACAACAACAACAGCAACGATGCTTCCACGCGACGGAGACCGCTCCTGTCGCCACGGCCGGCGAGGGTTCGAAAAGCGGAGATGAGGAAGAGGAAGACGAGGATGAGGATGATGAATCGGAAGAAGACGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGTTGAAGGAAGTTCGAGAGTACAGGAAGAGGAGGAGGAAACGGAATCGAAGAAGAGGGGGAGAAAAGAAGGATTCACAGCGGGGATTCAGCAGATGAGTGCGGAGGTGATGGGAGTTGTGCAGGACGGGGGGAGGAGCCCGTGGGAGAAGAAGCAGTGGATGAAGAGGCGATTGATTCAGCTAGAAGAGCAGCAAGTGAAATACCAATCGCAGGGCTTAGAGATTGAGAAACAGAGACTGAAATGGCTGAAGTTTAGGAGGAAGAAGGAGAGGGATATGGAGAGAGCGAAGCTGGAGAACGAGAAGAGAAGGCTGGAAAATGAGAGGATGATGCTGATGGTGAAGCAGAAGGAACTCGATTTGACGGATCTGCACAATTATCAGCAGCAGCAGCAGCAGCATTCCTCGAACAGGCGAGGTGATCCATCTTCGATCACAGGTTGA 1389 52.2 MEPNSLGGGGGASGGMFPGISSSMLGLELPLHQIPSNPHQLHHPPMVSYVPHEAHHQQQPPPAAVKCPYPAKPKPQQSNVSDEEEQGLADDSNSDAKKKISPWQRMKWTDMMVRLLITAVFYIGDEGGSEPMDHASKKKPVGLLQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENHTLLESMELTPKVKEEVRKLLNSKHLFFREMCAYHNTCRHGAGNSGGGGANTLPETGAEPSHLPQQQQQQRCFHATETAPVATAGEGSKSGDEEEEDEDEDDESEEDDEEEEEEEEEVEGSSRVQEEEEETESKKRGRKEGFTAGIQQMSAEVMGVVQDGGRSPWEKKQWMKRRLIQLEEQQVKYQSQGLEIEKQRLKWLKFRRKKERDMERAKLENEKRRLENERMMLMVKQKELDLTDLHNYQQQQQQHSSNRRGDPSSITG 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1130008 1131396 + CmaCh14G002600.1 Cma14g00260 307243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00260 462 PANTHER F16F4.11 PROTEIN-RELATED 14 459 - -
Cma14g00260 462 MobiDBLite consensus disorder prediction 256 274 - -
Cma14g00260 462 MobiDBLite consensus disorder prediction 436 462 - -
Cma14g00260 462 MobiDBLite consensus disorder prediction 288 324 - -
Cma14g00260 462 Gene3D - 108 182 - -
Cma14g00260 462 MobiDBLite consensus disorder prediction 243 345 - -
Cma14g00260 462 MobiDBLite consensus disorder prediction 438 462 - -
Cma14g00260 462 PANTHER SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR 14 459 - -
Cma14g00260 462 MobiDBLite consensus disorder prediction 51 99 - -
Cma14g00260 462 Pfam Myb/SANT-like DNA-binding domain 105 231 IPR044822 -
Cma14g00260 462 MobiDBLite consensus disorder prediction 325 339 - -
Cma14g00260 462 Coils Coil 401 433 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00433 Cma14g00260 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00260 Cma-Chr14:1130008 Cma15g00598 Cma-Chr15:2837031 9.17E-83 dispersed
Cma14g00260 Cma-Chr14:1130008 Cma06g00433 Cma-Chr6:2006352 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36180 PF13837 Myb_DNA-bind_4 4.40E-21 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00260 - - cmax:111498678 621.313