Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00262 ATGGCTTCCTGTGACGACGACTTCTCTCTCCTCAGCGACGACCACCACCACCACCACCAACAACACCACCAATCTACCGCCAACCACCATCATGTACCAACTCCTAACCACATCCATCAATCATATGCTCCTCACCGCTTCACGCCTCGAGCGTCTTCCGTTCACGCGTCGCCACCGCCACCTCCCAATCAACCGGCTCAACCGATTCTCGCGCCGTCTGGAAGTCCGAAGAAGATCGGCGGCCCGATAGATGAGGAGGGGGAGGAAGACGATGGGGAGGATTATGGTGATGCTGCTTTCTGCTCCAGTTCGTTTGATAATGGAGATCCGAATCGGCTTGGTGTTGGTGTTGATGTGCGGGTTGAGAAGAGGAAGGATCAGTCGGATGAGCTTGGGGAGGAAGGAGGTTCTTATAGTTATAAAAGAGCGAAGCCTTCCTCCAGTGGCGGAGAATACAGGAAGGATCGAGAGGAGTGGAGCGATGCGGCTATCTCCTGCCTTCTGGACGCGTATACCGAGAAATTTACGCAGCTGAATAGGGGAAATTTGAGGGGGAGGGACTGGGAGGAAGTGGCTGCAACTGTCAGTGAACGGTGCGAGAAGCAGAGCAAGAGCGTAGAACAGTGTAAGAACAAGGTGGACAACTTAAAAAAGAGGTATAAGTTGGAGAGGCAGAGGATGAGTAACGGTGGCGTTTCGATCAGCCACTGGCCTTGGTTCAAGCAGATGGAGCAGATTGTTGGAAATTCTTTGACAATGAAGGTTGTGTCTGACGATGATCGGAGTGTTGCTTCATCAGGGAATACTCCGAGGATATCAAAGAGGTATGTTCTTCCCACACCCAATACTGCTGGTCACATGAATAATGTAAAACCCAAAGCAGTTACCAGTCCAAGGTGGCGAAGAGTCGTGTTTAAAATCAGTGGTGAAGCTCTTGCAGGGACTGGTCCTAACAACATTGACTCAAAGGTTGCAATGGCAATCGCCAGGGAAGTTGTAATGGCCTGTCGCCTGGGTGTGGAGGTGGCAATTGTTGTTGGAGGTCGTAACTTCTTCTGTGGAGACTCTTGGGTGACTACAACAGGTTTAGATAGATGTACAGCATACCAAATTGGTATGATGGCTACCGTTATGAATTCAGTACTTCTCCAATCAGCAATAGAGAAGATGGGAGTTCAGACTCGTGTCCAATCTGCATTTATGCTTCAGGAGGTTGCTGAACCATACAGTAGGCAACGTGCTATAAGGCATCTTGAGAAAGGCAGAGTAGTTATATTTGGTGGCATTGGTGCTGGCACTGGAAATCCCCTATTTTCCACTGATACAGCTGCGGCCTTTCGAGCTTCTGAGATTCATGCTGAGGCAGTTCTTAAGGGTACAAATGTTGATGGGGTGTATGACTGCAATTCGCATGACAGCAATTTTACATTCAAGCACATCTCTTTCAGGGAGTTAGTATCAAGAGGTGCCATTAGCATGGACATGACAGCATTAACTTTCTGCGAAGAGAATAACATTCCCGTTGTGGTCTTTAATCTTCTTGAGCCTGGAAATATCTCAAAAGCTTTATGCGGAGAGCAAGTGGGTACTCTGATTGATCAAAATGGAAGAATTAGCTAG 1620 48.4 MASCDDDFSLLSDDHHHHHQQHHQSTANHHHVPTPNHIHQSYAPHRFTPRASSVHASPPPPPNQPAQPILAPSGSPKKIGGPIDEEGEEDDGEDYGDAAFCSSSFDNGDPNRLGVGVDVRVEKRKDQSDELGEEGGSYSYKRAKPSSSGGEYRKDREEWSDAAISCLLDAYTEKFTQLNRGNLRGRDWEEVAATVSERCEKQSKSVEQCKNKVDNLKKRYKLERQRMSNGGVSISHWPWFKQMEQIVGNSLTMKVVSDDDRSVASSGNTPRISKRYVLPTPNTAGHMNNVKPKAVTSPRWRRVVFKISGEALAGTGPNNIDSKVAMAIAREVVMACRLGVEVAIVVGGRNFFCGDSWVTTTGLDRCTAYQIGMMATVMNSVLLQSAIEKMGVQTRVQSAFMLQEVAEPYSRQRAIRHLEKGRVVIFGGIGAGTGNPLFSTDTAAAFRASEIHAEAVLKGTNVDGVYDCNSHDSNFTFKHISFRELVSRGAISMDMTALTFCEENNIPVVVFNLLEPGNISKALCGEQVGTLIDQNGRIS 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1132066 1136880 + CmaCh14G002620.1 Cma14g00262 307245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00262 539 CDD AAK_UMPK-PyrH-Ec 301 533 IPR015963 GO:0005737|GO:0006221|GO:0033862
Cma14g00262 539 MobiDBLite consensus disorder prediction 262 291 - -
Cma14g00262 539 MobiDBLite consensus disorder prediction 54 69 - -
Cma14g00262 539 Pfam Amino acid kinase family 302 512 IPR001048 -
Cma14g00262 539 MobiDBLite consensus disorder prediction 116 137 - -
Cma14g00262 539 PANTHER ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN 1 539 IPR011817 GO:0006221|GO:0009041
Cma14g00262 539 MobiDBLite consensus disorder prediction 262 290 - -
Cma14g00262 539 Pfam Myb/SANT-like DNA-binding domain 156 246 IPR044822 -
Cma14g00262 539 Gene3D - 159 222 - -
Cma14g00262 539 MobiDBLite consensus disorder prediction 1 154 - -
Cma14g00262 539 SUPERFAMILY Carbamate kinase-like 298 532 IPR036393 -
Cma14g00262 539 Coils Coil 199 226 - -
Cma14g00262 539 Gene3D - 291 538 IPR036393 -
Cma14g00262 539 PANTHER URIDYLATE KINASE 1 539 - -
Cma14g00262 539 Hamap Uridylate kinase [pyrH]. 298 533 IPR015963 GO:0005737|GO:0006221|GO:0033862
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00434 Cma14g00262 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01087 Cma-Chr3:7441160 Cma14g00262 Cma-Chr14:1132066 6.82E-94 dispersed
Cma07g00792 Cma-Chr7:3592281 Cma14g00262 Cma-Chr14:1132066 7.58E-97 dispersed
Cma14g00262 Cma-Chr14:1132066 Cma13g00603 Cma-Chr13:5905595 3.21E-20 dispersed
Cma14g00262 Cma-Chr14:1132066 Cma06g00434 Cma-Chr6:2008729 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36181 PF00696 AA_kinase 5.70E-25 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00262 - - csv:101222460 980.319