Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00281 ATGGAAATGGAGAGCTCGCGGAGACCTTTCGATCGAACGAGGGAACCGGGTTTGAAGAAGCTTCGACTGGCCGATGAGGCTGACCACGGTGGGAACATTAATGGCCGGCCGTTTCCGCAGAGACCAGTTGTTTCCGGAACCAATATCGCTCAATCCAGATTTCGAGCAAGCGATAGGGATCCGGGAAGCAGTGATTCTGGTCGAGTGGGGTATCAGCCTCAGCCGCCGCAGCATCAGGAGCTTGTGAGCCAGTACAGGACAGCCCTTGCTGAGCTGACTTTCAATTCCAAACCAATCATCACGAATTTGACCATAATCGCGGGTGAAAATCTCCAGGCTGCAAAAGCGATCTCTGCCACTATTTGTGCCAACATTCTCGAGGTTCCCACTGAGCAGAAGCTGCCATCACTTTATCTATTGGACAGTATTGTAAAGAATATTGGAAGAGATTACATAAAATACTTTGCAGCAAGACTACCGGAGGTATTCTGCAAAGCTTATAGGCAAGTCGACCCATCTGTTCATACAAGCATGAGACATCTTTTTGGCACCTGGAAAGGAGTGTTTCCTCCTCAAACTCTCCAGATTATCGAGAAAGAACTTGGCTTCGTGTCTAGCGGTAGTTCTTCTTCTGGGACCATAACCTCGAAGCCAGATTTGCAGGCACAACGTCCACCCCATAGTATCCATGTAAATCCCAAGTATATTGAGAGGCAACGCCTTCAGCAGTCAGGCAGGGTGAAAGGAATGACTAGTGATGGTACTGGCGCAACAACTGTAACTCAGGATGTTGCCCAAGCCAAAATTAGTTCTGGACGCCTGTGGGCGGATACACCAATTAAAGGGCTTGATATTCAGCGTCCACTTAGAGATGCACCAAATGATTTGGCACAAGAGAAGAAAGTCGCCGCTGCATATCTAGACTATGAATGTGGTTCTGATCTTTCAAGGACATCAGGTGTTGGAAGGAGGGTCGTTGATGAAGGGCAAGACAAATCTTGGTCTTTAGCAGGAAACAATTTGGCTGAGAAATTATCTGGACAAAGAAATGGGTTCGACATCAAGCTTGGATATGAAAATTACCCTGCACCCAAGTCTGCAAACACTGGTGCACGTCTACTGCCCATGCAAAAATTTTCAAGCGGCAGCAGCAACAGAGTGTTGTCTACTAACTGGAAGAACTCTGAGGAAGAGGAGTTTATGTGGGGTGAAATGAACTCTATGTTGACAGGTCATGGTGCACCTGCCATCGCCAGTAGCACCGGGAAAGATCAATGTACTCCTGAGGATTCGGATAATTCGGGTACTGACAATAAGCCATTAAGCATACGGGATACTGGGGCAAGTGTTGATAGGGAAGCTTCCTTTGATTCACAATCATCTGAGAAGAGAGAACTAGGGGATTCTGGACAGCAGAGGTCATCAATGTGGCAGTTCCAGGAGGCAATATCTCTGGATGGCCTGAGAGGCAGGGTTCCTAGAAAGAATTCAGCTCAATCAGGAGGTATTGGTGCCACTCTAACCGCAATGTCAGGTGCTAACTCTTCTGTGGATCAAATGGGAGGACGATCACAGATCACATCATCTAATATTGGAGCTTCAGGACATGGGTTTCTGAATAAAGGAGGTTCAGGGTCCCTTGGGACTGTAGGCCATCCAAGATTTCCATCACAAAGTGTTGCATTACCATCTGGACAGCCACCCTTGCACCAGCGCCCCCCTTCACCATTAGTGGATCATGTCGCTCATAAAAAACAAAGCCATAAAACTTCATTTCCTAATCTTGATCCACGTAGAAGGCATATACGGGATGCTGCCCTTGGCCTGCATCCCAACATTCGGCCAGATAACCTTCAAAAACCACAGCCTCAGGACCTACAAGCTTCAGCTTCATCCATACCTGCTTCTCAAACCAGGCACCGGTCACTGAAACCTGAAGTCACACAGTCGGAACTTTCTAGTCAGCATGCAGTATCAATTCCGGACACCGATTTTGGACCGCCCTCATCGACTGGGACAGTTCTAGAACTCTTACCTGCAGAAATTTTGGGAGAGCCAAGCACTAGTAGTTTGTTGGCTGCTATAATGAAAAGTGGAATTTTGTCCAACCATTCAATAATCAGTAGCATGCAACAGAATTTCAGCTCCCAAGATGTGGGAAATATGCAACCCCGTTCAAGCGGCAACCCTCCTCTACCAAGTCAGTCTTCTCCTGCCCATACTCAGTCTACATTCTCAGAGCCAAAGACTGTGGGCGAATCTTCATTAGATCCTCCATCTCTTGAAAGCACATCAACGCTGGTTAAGTTATCTCAGATTAAGGTAGAAGACACACCGTTGCCATCTGATCCAGTTCCTCCTTCATCTACTATGAATAGTGCATCCATTGAAACTTCAAATGTGGTAAACGATGATTCTAGTCCAATTTCTAACCTTTTGAGCTCATTGGTTGCAAAGGGCCTCATATGTGCTTCTAAAGGAGAATTAGCAAGTAACGTTACATCCCAGATGCCTTCACAGCCTGAACATTTGAAGTCAGGTGATGTTGTGACTTGTTCTATACCAGTTCCTTCCATCCCTATTCCCTCTTCCAGTCAATCATCTATAAGACCTGAATCACCTTCAAAAGCTGCTGCTAAGAGCTCCACTACTCCACCTCCATCTGCCACAACTGAGATAAACAACCTCATAGGCTATGAGTTTAGTTCACATGTTATTCGCAAATTTCATCCATCTGTGATCAGTGGACTCTTTGACGATATTCCATTTCAATGTAAGATCTGCGGTCTTGGACTGAAATGTGAAGAACAGTTGGATACGCACTTGTGGTGGCACATGTCAAGAACTGAGTCAAACAATTCATGTAGGGCACCAAGAAGATGGTATCCAAGTTCAGTTGATTGGGTATCTGGAAATGCTAGACTTCTACTTGACGTTGCCACTTCTCTGGACAAGTCCAGCATGATGGAAGAAGATAACGAGCCAATGGTTCCAGCAGATGAAGATCAATTTGCCTGTGTTTTATGTGGTGAGCTTTTTGAAGATTTTTATAATCTAGAGTTGGGTAAGTGGATGTTCAAAGGAGCAATGCATATCACAATCCCATCAGTGGGTAGTGAGGTAGGAAGCACAAATGAACGAGTTGCTATAGGACCCATTGTGCACATAAGTTGCTTAACTGAAAGTTCAATACACGAGTTGGGACTGGCAACTGATATTAAGATGGTAATGAAATGGATGTATGATGCTTCCTTGCAAAACGTAATACTGGAACTACTCTGGGGGCATCCTGCTCGTGCAATTGGCATGGGGTTGCGGAAAGGAAGTATGGATATGAGTGCTTCGCTCGTGGAGTAA 3357 45.81 MEMESSRRPFDRTREPGLKKLRLADEADHGGNINGRPFPQRPVVSGTNIAQSRFRASDRDPGSSDSGRVGYQPQPPQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKAISATICANILEVPTEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVHTSMRHLFGTWKGVFPPQTLQIIEKELGFVSSGSSSSGTITSKPDLQAQRPPHSIHVNPKYIERQRLQQSGRVKGMTSDGTGATTVTQDVAQAKISSGRLWADTPIKGLDIQRPLRDAPNDLAQEKKVAAAYLDYECGSDLSRTSGVGRRVVDEGQDKSWSLAGNNLAEKLSGQRNGFDIKLGYENYPAPKSANTGARLLPMQKFSSGSSNRVLSTNWKNSEEEEFMWGEMNSMLTGHGAPAIASSTGKDQCTPEDSDNSGTDNKPLSIRDTGASVDREASFDSQSSEKRELGDSGQQRSSMWQFQEAISLDGLRGRVPRKNSAQSGGIGATLTAMSGANSSVDQMGGRSQITSSNIGASGHGFLNKGGSGSLGTVGHPRFPSQSVALPSGQPPLHQRPPSPLVDHVAHKKQSHKTSFPNLDPRRRHIRDAALGLHPNIRPDNLQKPQPQDLQASASSIPASQTRHRSLKPEVTQSELSSQHAVSIPDTDFGPPSSTGTVLELLPAEILGEPSTSSLLAAIMKSGILSNHSIISSMQQNFSSQDVGNMQPRSSGNPPLPSQSSPAHTQSTFSEPKTVGESSLDPPSLESTSTLVKLSQIKVEDTPLPSDPVPPSSTMNSASIETSNVVNDDSSPISNLLSSLVAKGLICASKGELASNVTSQMPSQPEHLKSGDVVTCSIPVPSIPIPSSSQSSIRPESPSKAAAKSSTTPPPSATTEINNLIGYEFSSHVIRKFHPSVISGLFDDIPFQCKICGLGLKCEEQLDTHLWWHMSRTESNNSCRAPRRWYPSSVDWVSGNARLLLDVATSLDKSSMMEEDNEPMVPADEDQFACVLCGELFEDFYNLELGKWMFKGAMHITIPSVGSEVGSTNERVAIGPIVHISCLTESSIHELGLATDIKMVMKWMYDASLQNVILELLWGHPARAIGMGLRKGSMDMSASLVE 1118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1192866 1200922 + CmaCh14G002810.1 Cma14g00281 307264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00281 1118 MobiDBLite consensus disorder prediction 713 794 - -
Cma14g00281 1118 MobiDBLite consensus disorder prediction 713 772 - -
Cma14g00281 1118 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 3 1081 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Cma14g00281 1118 MobiDBLite consensus disorder prediction 411 475 - -
Cma14g00281 1118 MobiDBLite consensus disorder prediction 420 443 - -
Cma14g00281 1118 SMART 558neu5 80 202 IPR006569 -
Cma14g00281 1118 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 3 1081 - -
Cma14g00281 1118 SUPERFAMILY ENTH/VHS domain 77 200 IPR008942 -
Cma14g00281 1118 Pfam CID domain 87 195 IPR006569 -
Cma14g00281 1118 MobiDBLite consensus disorder prediction 542 672 - -
Cma14g00281 1118 CDD CID_Pcf11 82 194 - -
Cma14g00281 1118 MobiDBLite consensus disorder prediction 860 889 - -
Cma14g00281 1118 ProSiteProfiles CID domain profile. 77 205 IPR006569 -
Cma14g00281 1118 MobiDBLite consensus disorder prediction 617 670 - -
Cma14g00281 1118 MobiDBLite consensus disorder prediction 208 222 - -
Cma14g00281 1118 ProSitePatterns Zinc finger C2H2 type domain signature. 925 945 IPR013087 -
Cma14g00281 1118 Gene3D - 72 202 IPR008942 -
Cma14g00281 1118 MobiDBLite consensus disorder prediction 208 227 - -
Cma14g00281 1118 MobiDBLite consensus disorder prediction 1 76 - -
Cma14g00281 1118 MobiDBLite consensus disorder prediction 577 607 - -
Cma14g00281 1118 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00447 Cma14g00281 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00726 Cma-Chr13:6452729 Cma14g00281 Cma-Chr14:1192866 9.84E-32 dispersed
Cma14g00281 Cma-Chr14:1192866 Cma18g00244 Cma-Chr18:1286147 9.00E-31 dispersed
Cma14g00281 Cma-Chr14:1192866 Cma06g00447 Cma-Chr6:2070293 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00281 K14400 - csv:101223169 1667.13