Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00286 ATGGAAATGGATGATCAATATGCCCTCTCCGATCTCCGCCACCTCATGACTACACCTCCATCTCGCTCCCATTTCCCCTCTTCTTCCTCAATTCCCCACCATGATCTCTTCTCCTCTTCCTCCACTTCCTCCTCCGCCGCCGCCTTCCGCCACCACCTCCACCACCACCATCATACCCCTTACGACCTCATCATGATGATGCCACGGGATCCTCTCCCTGACTTCCGCTCCGATTCCGCTGCCACGCCCCCTGCCGTTGTCTCCGCTCCAACAGCTCCCACCGCCTTTGAACTCGAAACAGCCTCACTCGCTGCCGACTGCGCCACGCCCCGATGGCCTCGCCAAGAAACTCTCACTCTCTTGGATATCAGATCTCGACTTGATTCTAAGTTCAAAGAAGCCAACCAAAAAGGACCCCTTTGGGATGAAGTTTCAAGAATCATGGCTGAGGAACACAATTATCAAAGAAGTGGGAAAAAATGCAGAGAAAAGTTTGAGAATTTGTATAAATATTACAAAAAGACAAAGGAAGGCAAAGCTGGAAGACAAGATGGTAAGAACTACAGATTCTTCAGGCAGTTGGAAGCTCTCTATGGTGAAACAACCAATTCAGCTCAACTTCCAGATTCCCATTTTGTTGGAGACAGCAACCTCAGCTTCCAACAAAATGGGACTAACAATCCGACCACCGCTCTACCAATGAGCTACGAAACTCAACAGAAGCATTACTGCGACAGCCTCAGTCTCTCTAACACGTCCGAGTTTGAAACCTCAGCCTCGTCTGATGACAACGATGACCTCGGCTCGGTTGGCATTATGGACAACGATTCGGTCGAGAAGAGACGGAAACGACGAGGTGGGAAATGCTGGAAGGCAAAGATCAAACAGTTTATCGACTCGCAAATGAGGAAGCTCATTGATAAACAAGAGGCTTGGTTGGAGAAGCTCATGAAAACTCTTGAACAAAAGGAAAAGGATAGAATGATTCGTGAGGAGGAATGGAGGAGACAAGAAGTGTCAAGAATGGACCGAGAGAGGAGCTTTTGGGCAAAGGAGAGAGCATGGATAGAGGCTAGAGATGCAGCATTAATGGAGGCATTGCAAAGGCTAACGGGACGAGAATTGAGAGACTACAACTCCTCGCCCGACCACGGATTAATCGCACCGGAGCGTCATCGGAATAACAGCGATAACCAAAACGAAGACGGGAGCGAAATACTAAACAACAACACCGGTAGAGAACTAGTAGACAACAATAATTACCAAAGGAAAACAATAGATGAAGGCAACAAGAAACGCAAGGAGAATTCAAGATCAGCCACCACCTACAATCTTTACTTCCAAACAGATTCCTCCCTCTACAGCGGCGGAGGACCCTGCGGCGGCGGTGCCGAGATCAAAGAACAAAGTCCAAACAGCTCGAATGCTGGCGGTGGGGGCGGGGGCGGTGGCAGCCATGTGGTGCAAGATAGTTGCTTTCGGTTCTTGATGGGTGAAGGAGATCAGTCTCAATCTGGTTTGTGGGAAAATTTTGGTCTGAAACTCAACAATGGAAGTGACCAAAGTTGA 1569 48.88 MEMDDQYALSDLRHLMTTPPSRSHFPSSSSIPHHDLFSSSSTSSSAAAFRHHLHHHHHTPYDLIMMMPRDPLPDFRSDSAATPPAVVSAPTAPTAFELETASLAADCATPRWPRQETLTLLDIRSRLDSKFKEANQKGPLWDEVSRIMAEEHNYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKNYRFFRQLEALYGETTNSAQLPDSHFVGDSNLSFQQNGTNNPTTALPMSYETQQKHYCDSLSLSNTSEFETSASSDDNDDLGSVGIMDNDSVEKRRKRRGGKCWKAKIKQFIDSQMRKLIDKQEAWLEKLMKTLEQKEKDRMIREEEWRRQEVSRMDRERSFWAKERAWIEARDAALMEALQRLTGRELRDYNSSPDHGLIAPERHRNNSDNQNEDGSEILNNNTGRELVDNNNYQRKTIDEGNKKRKENSRSATTYNLYFQTDSSLYSGGGPCGGGAEIKEQSPNSSNAGGGGGGGGSHVVQDSCFRFLMGEGDQSQSGLWENFGLKLNNGSDQS 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1217842 1220204 - CmaCh14G002860.1 Cma14g00286 307269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00286 522 Coils Coil 306 333 - -
Cma14g00286 522 CDD GT1 110 176 - -
Cma14g00286 522 MobiDBLite consensus disorder prediction 375 399 - -
Cma14g00286 522 ProSiteProfiles Myb-like domain profile. 111 169 IPR001005 -
Cma14g00286 522 PANTHER - 30 417 - -
Cma14g00286 522 PANTHER - 419 509 - -
Cma14g00286 522 Gene3D - 112 174 - -
Cma14g00286 522 MobiDBLite consensus disorder prediction 420 438 - -
Cma14g00286 522 MobiDBLite consensus disorder prediction 375 439 - -
Cma14g00286 522 Pfam Myb/SANT-like DNA-binding domain 110 197 IPR044822 -
Cma14g00286 522 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 419 509 - -
Cma14g00286 522 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 30 417 - -
Cma14g00286 522 MobiDBLite consensus disorder prediction 18 37 - -
Cma14g00286 522 MobiDBLite consensus disorder prediction 400 419 - -
Cma14g00286 522 MobiDBLite consensus disorder prediction 459 485 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00453 Cma14g00286 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01418 Cma-Chr4:7250979 Cma14g00286 Cma-Chr14:1217842 3.29E-83 dispersed
Cma14g00286 Cma-Chr14:1217842 Cma18g00935 Cma-Chr18:8020325 1.49E-86 dispersed
Cma14g00286 Cma-Chr14:1217842 Cma06g00453 Cma-Chr6:2095169 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36183 PF13837 Myb_DNA-bind_4 1.40E-19 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00286 - - cmos:111441376 968.378