Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00287 ATGAATCATGTCCAAGATTCAAAATCTCGACTGTCTCCGCCTGTGCCTTCCACCCAAACGCTCATCAGACCTCCGTTCATCTCCAACTGGTCTGCACTCTCCTCCTCCTCCTCCCTCCATTTCCCCGCCCCCATAAATGGCTTCCCTCCACCATCCTCTTCAACCCCACCGCCGCCTCCCTCCTCCTCCTCCTATCCTCACTTCCCACTTCCCTTCATGTCTTCCTCCGGCCGCCACCCCATCTACAAAGGCATTCGCCAGCGCACCACCGGAAAATGGGTCTCCGAAATTCGCGAGCCAAGGAAACCCAACCGAATTTGGTTAGGAACCTTCCCAACCGCTGAAATGGCTGCTGTCGCTTACGACGTTGCAGCCCTCGCCCTCAAAGGCCAGGACGCCGAGCTCAATTTCCCCAATTCCGCTGCTTCTCTCCCTGTCCCCGCCTCTCGCTCTGCTTCTGATATTCAAGCTGCCGCCGCATCCGCCGCCGCTGCCCTTGGTGCAGCCGCCGCCGCCATCGAGGCACGGAATAATAACGGTCGCCGCCGCAGTAACTTCTCTGGAACTAACTCTTCGTACGGAACAAGATATGATGAAAATGAATTGGGAAATGAGTTCGTTGATGAGGATTTAATCTTCGATATGCCTAATGTTCTAATCAACATGGCCGAAGGAATGCTTCTTAGCCCTCCCCGTTTCAATGTCCATGGCAATGACGACCGCGATGACGGCAATCAAAACCTTTGGAACTTTCCCTAA 759 54.55 MNHVQDSKSRLSPPVPSTQTLIRPPFISNWSALSSSSSLHFPAPINGFPPPSSSTPPPPPSSSSYPHFPLPFMSSSGRHPIYKGIRQRTTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGQDAELNFPNSAASLPVPASRSASDIQAAAASAAAALGAAAAAIEARNNNGRRRSNFSGTNSSYGTRYDENELGNEFVDEDLIFDMPNVLINMAEGMLLSPPRFNVHGNDDRDDGNQNLWNFP 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1229251 1230619 + CmaCh14G002870.1 Cma14g00287 307270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00287 252 Gene3D AP2/ERF domain 81 139 IPR036955 GO:0003700|GO:0006355
Cma14g00287 252 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 74 252 - -
Cma14g00287 252 MobiDBLite consensus disorder prediction 44 66 - -
Cma14g00287 252 CDD AP2 80 140 IPR001471 GO:0003700|GO:0006355
Cma14g00287 252 Pfam AP2 domain 80 130 IPR001471 GO:0003700|GO:0006355
Cma14g00287 252 MobiDBLite consensus disorder prediction 1 22 - -
Cma14g00287 252 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700|GO:0006355
Cma14g00287 252 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Cma14g00287 252 MobiDBLite consensus disorder prediction 44 69 - -
Cma14g00287 252 SUPERFAMILY DNA-binding domain 81 140 IPR016177 GO:0003677
Cma14g00287 252 SMART rav1_2 81 144 IPR001471 GO:0003700|GO:0006355
Cma14g00287 252 ProSiteProfiles AP2/ERF domain profile. 81 138 IPR001471 GO:0003700|GO:0006355
Cma14g00287 252 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 74 252 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00287 Cma-Chr14:1229251 Cma16g00151 Cma-Chr16:665860 2.72E-40 dispersed
Cma18g01218 Cma-Chr18:9619192 Cma14g00287 Cma-Chr14:1229251 1.27E-42 dispersed
Cma14g00287 Cma-Chr14:1229251 Cma14g00288 Cma-Chr14:1234638 3.46E-27 tandem
Cma14g00287 Cma-Chr14:1229251 Cma06g00454 Cma-Chr6:2105391 2.47E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36184 PF00847 AP2 3.60E-11 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00287 - - csv:101203380 231.491