Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00288 ATGCCTTCTTCATCCTCCAGCTCAACCAATGAACACCTTCCGCCGTCGCAGAAGACGGCCTCCACGAAGCGGAAGGCCGGCCGGAAAAAGTTTCAGGAGACCCGCCACCCGATTTACAAAGGCGTCCGCCAGAGAAATGGAAAATGGGTCAGCGAGCTCCGGTGGCCCAACAAAAATTCCACCTTTTGGGTCGGAACTTTTTGCAGCCCGGAAATGGCGGCGGTGGCGTACGACGTAGTTGCCTTGACCATTAAAGGTGAGTCTGCACCACTCAATTTTCCAAATTGGACTCACTTATTTCCCCGAGTTACGTCGTCGTCATCGTCCATAAACGATATTCGAACGATGGCAATGGAGGCGGCGGAGGCATTTACATCAAGCAATAGATTATCGTCTTTGTCGTCGTCATTGTTATGTTCTTCTTTGATGTCGGAGGAGAAGATGATACCGGAAGTTTTAACGGAAAGGTTGGTTTTGGATGAGGAGGAGGTGTTTAACATGCCGGTGATAATCGCCGGTATGGCGGAAGGGTTGATTCTAACACCGCCAGGAATGAAGAGAGGTTTTAACTGGGAGGAGTATGAAGATACGGTGGAGTTGTCATTATGGAGCGACGACCGAGAGAAAAACTAG 633 49.92 MPSSSSSSTNEHLPPSQKTASTKRKAGRKKFQETRHPIYKGVRQRNGKWVSELRWPNKNSTFWVGTFCSPEMAAVAYDVVALTIKGESAPLNFPNWTHLFPRVTSSSSSINDIRTMAMEAAEAFTSSNRLSSLSSSLLCSSLMSEEKMIPEVLTERLVLDEEEVFNMPVIIAGMAEGLILTPPGMKRGFNWEEYEDTVELSLWSDDREKN 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1234638 1235270 - CmaCh14G002880.1 Cma14g00288 307271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00288 210 SMART rav1_2 38 100 IPR001471 GO:0003700|GO:0006355
Cma14g00288 210 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Cma14g00288 210 PRINTS Ethylene responsive element binding protein signature 76 96 IPR001471 GO:0003700|GO:0006355
Cma14g00288 210 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Cma14g00288 210 MobiDBLite consensus disorder prediction 1 21 - -
Cma14g00288 210 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 5 204 IPR045277 GO:0003700
Cma14g00288 210 MobiDBLite consensus disorder prediction 1 38 - -
Cma14g00288 210 CDD AP2 37 95 IPR001471 GO:0003700|GO:0006355
Cma14g00288 210 ProSiteProfiles AP2/ERF domain profile. 38 94 IPR001471 GO:0003700|GO:0006355
Cma14g00288 210 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1B-LIKE 5 204 - -
Cma14g00288 210 Gene3D AP2/ERF domain 38 95 IPR036955 GO:0003700|GO:0006355
Cma14g00288 210 SUPERFAMILY DNA-binding domain 38 95 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00454 Cma14g00288 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00288 Cma-Chr14:1234638 Cma16g00151 Cma-Chr16:665860 3.61E-36 dispersed
Cma14g00287 Cma-Chr14:1229251 Cma14g00288 Cma-Chr14:1234638 3.46E-27 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36185 PF00847 AP2 3.40E-09 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00288 - - mcha:111014370 276.944