Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma14g00333 | ATGTCTATAAACCACTTCTCTCAAGACTTCCATCAACCCCTCTTCTCATCTCCCCACCTCCCCATCATGCTTAGTAATAACCCCAAATCCTCCCTCTCTGACAACCTCAAGCAGCCCATGTTCGAGAAGCCCTTAACCCCCAGCGACGTTGGGAAACTCAACCGCCTCGTTATCCCCAAGCAGTATGCGGAGAGATACTTTCCCCTCTCACCCTCCTCCTCCGCCGCCGCCGCCGCCACTGCCCACTCTGCTGACAAGGCCTTGCTCCTCACCTTCGAAGATGAGTCTGGAAAGCTGTGGCGCTTTCGTTACTCTTATTGGAATAGTAGCCAGAGCTATGTGTTGACTAAGGGCTGGAGCCGCTTTGTCAAAGAGAAGCGCCTTGACGCTGGTGATTGCGTCGTTTTTGAACGCCACCGCTCTGATGGCGACAGGTTGTTCATTGGCTGGAAGCGGCGCTCGGCGCCCTCTCCGGCGGAGACTGCTGTGGCGCCAAGTGGCAGTGGCGGTGGGTGTTGGACTAGAATGTTCTACTCTGCAAACCCATATCCTTCTCATCATCATCTTCCTTCACCGCCATACCAATCTTCGGGTTCTACTCTTCAAGAGTCCTCTGTTCAGAGTCAAACAGTGTCGGTTGGGAATTCAAAGATTCTGCGGCTGTTCGGGGTGGACTTAGAGTGCCAAACCGACATGTCGGAACCTGAACCACCGTCGACGGTCGGAGGCGTGTCAAGTATGTCGGGCCGGGATCCGACCCGCCACATTTTCTACTCACATTATTCTTCTGCCGTTCCTCATCACATGGATTTCACTTTCCCACAAGATGTCAAGCAGACGAAATATCAAGGATAG | 855 | 53.45 | MSINHFSQDFHQPLFSSPHLPIMLSNNPKSSLSDNLKQPMFEKPLTPSDVGKLNRLVIPKQYAERYFPLSPSSSAAAAATAHSADKALLLTFEDESGKLWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDCVVFERHRSDGDRLFIGWKRRSAPSPAETAVAPSGSGGGCWTRMFYSANPYPSHHHLPSPPYQSSGSTLQESSVQSQTVSVGNSKILRLFGVDLECQTDMSEPEPPSTVGGVSSMSGRDPTRHIFYSHYSSAVPHHMDFTFPQDVKQTKYQG | 284 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 1480443 | 1483724 | - | CmaCh14G003330.1 | Cma14g00333 | 307316 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma14g00333 | 284 | MobiDBLite | consensus disorder prediction | 190 | 208 | - | - | |
Cma14g00333 | 284 | CDD | B3_DNA | 39 | 143 | IPR003340 | GO:0003677 | |
Cma14g00333 | 284 | Gene3D | - | 30 | 161 | IPR015300 | - | |
Cma14g00333 | 284 | SMART | B3_2 | 41 | 154 | IPR003340 | GO:0003677 | |
Cma14g00333 | 284 | ProSiteProfiles | B3 DNA-binding domain profile. | 41 | 154 | IPR003340 | GO:0003677 | |
Cma14g00333 | 284 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 32 | 237 | IPR044800 | GO:0003700 | |
Cma14g00333 | 284 | SUPERFAMILY | DNA-binding pseudobarrel domain | 38 | 154 | IPR015300 | - | |
Cma14g00333 | 284 | MobiDBLite | consensus disorder prediction | 188 | 208 | - | - | |
Cma14g00333 | 284 | Pfam | B3 DNA binding domain | 41 | 153 | IPR003340 | GO:0003677 | |
Cma14g00333 | 284 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 | 32 | 237 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma14g00333 | Cma-Chr14:1480443 | Cma16g00597 | Cma-Chr16:3085688 | 4.04E-48 | dispersed | |
Cma14g00333 | Cma-Chr14:1480443 | Cma06g00497 | Cma-Chr6:2341282 | 1.03E-121 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36189 | PF02362 | B3 | 9.90E-30 | CL0405 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma14g00333 | - | - | csv:101214938 | 417.542 |