Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00333 ATGTCTATAAACCACTTCTCTCAAGACTTCCATCAACCCCTCTTCTCATCTCCCCACCTCCCCATCATGCTTAGTAATAACCCCAAATCCTCCCTCTCTGACAACCTCAAGCAGCCCATGTTCGAGAAGCCCTTAACCCCCAGCGACGTTGGGAAACTCAACCGCCTCGTTATCCCCAAGCAGTATGCGGAGAGATACTTTCCCCTCTCACCCTCCTCCTCCGCCGCCGCCGCCGCCACTGCCCACTCTGCTGACAAGGCCTTGCTCCTCACCTTCGAAGATGAGTCTGGAAAGCTGTGGCGCTTTCGTTACTCTTATTGGAATAGTAGCCAGAGCTATGTGTTGACTAAGGGCTGGAGCCGCTTTGTCAAAGAGAAGCGCCTTGACGCTGGTGATTGCGTCGTTTTTGAACGCCACCGCTCTGATGGCGACAGGTTGTTCATTGGCTGGAAGCGGCGCTCGGCGCCCTCTCCGGCGGAGACTGCTGTGGCGCCAAGTGGCAGTGGCGGTGGGTGTTGGACTAGAATGTTCTACTCTGCAAACCCATATCCTTCTCATCATCATCTTCCTTCACCGCCATACCAATCTTCGGGTTCTACTCTTCAAGAGTCCTCTGTTCAGAGTCAAACAGTGTCGGTTGGGAATTCAAAGATTCTGCGGCTGTTCGGGGTGGACTTAGAGTGCCAAACCGACATGTCGGAACCTGAACCACCGTCGACGGTCGGAGGCGTGTCAAGTATGTCGGGCCGGGATCCGACCCGCCACATTTTCTACTCACATTATTCTTCTGCCGTTCCTCATCACATGGATTTCACTTTCCCACAAGATGTCAAGCAGACGAAATATCAAGGATAG 855 53.45 MSINHFSQDFHQPLFSSPHLPIMLSNNPKSSLSDNLKQPMFEKPLTPSDVGKLNRLVIPKQYAERYFPLSPSSSAAAAATAHSADKALLLTFEDESGKLWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDCVVFERHRSDGDRLFIGWKRRSAPSPAETAVAPSGSGGGCWTRMFYSANPYPSHHHLPSPPYQSSGSTLQESSVQSQTVSVGNSKILRLFGVDLECQTDMSEPEPPSTVGGVSSMSGRDPTRHIFYSHYSSAVPHHMDFTFPQDVKQTKYQG 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1480443 1483724 - CmaCh14G003330.1 Cma14g00333 307316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00333 284 MobiDBLite consensus disorder prediction 190 208 - -
Cma14g00333 284 CDD B3_DNA 39 143 IPR003340 GO:0003677
Cma14g00333 284 Gene3D - 30 161 IPR015300 -
Cma14g00333 284 SMART B3_2 41 154 IPR003340 GO:0003677
Cma14g00333 284 ProSiteProfiles B3 DNA-binding domain profile. 41 154 IPR003340 GO:0003677
Cma14g00333 284 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 32 237 IPR044800 GO:0003700
Cma14g00333 284 SUPERFAMILY DNA-binding pseudobarrel domain 38 154 IPR015300 -
Cma14g00333 284 MobiDBLite consensus disorder prediction 188 208 - -
Cma14g00333 284 Pfam B3 DNA binding domain 41 153 IPR003340 GO:0003677
Cma14g00333 284 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 32 237 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00333 Cma-Chr14:1480443 Cma16g00597 Cma-Chr16:3085688 4.04E-48 dispersed
Cma14g00333 Cma-Chr14:1480443 Cma06g00497 Cma-Chr6:2341282 1.03E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36189 PF02362 B3 9.90E-30 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00333 - - csv:101214938 417.542