Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00361 ATGGCGACCTACCTTCATGCCAATTCTGATCACTTCCAGTCACCTGATGCCGCCCTTCAAACCCTCGTTTTAAGGAACCCAACCTATGTCCAATTCTCCGACACTCCGCCGCCTCCTCCTCCTCCCTCGCACCCTAATCTCCTCTTCTTCAATTCCCCTGCCCCTGCCCCTGCCCCTGCTGCTCCTAATTCCTTCTCTACACAGCAATTCGTTGGAATCCCCACGTCCCAAGACAACAATTCCCATTCCTTGAACCCCCACCATGATATCTCCGCCTTCCACGGTTTTCTCCCCCGTGTTCAACCCAACATTTGGAACTCAATTGACCCTTCCACGGCGGCGCGTGATTCTTCACGCGCTCAGCAGGGCTTGTCGTTGAGTCTCTCTTCGCAACACCCTCCTGGTTTTGGGTCGAGAGATGTTCAATCGCATACTCAGCAGGCGGTTTCTGGCGAGGAGACTCTGCGGATCTCTGGTGGATCGTCTTCTTCAGCTTCTGGTGTCTCCAATGGCGTTGCTGGAATTCAGGGTGTTTTAATCAGCTCTAAGTATCTCAAGGCTGCGCAAGAACTTCTAGATGAGGTTGTCAATGTCACCCAAAACGAAATTAAAAACGAATCGTCTCCCAGAAAGGGAAACGGAAATCAAACTAAGATGAACGGAGATGCATCCGCTGCTACTGGAACTGCAGATGTTTCCTTAGAAGGTGAAGCCGATGGAAAACGCGCCGTCGAGCTCACCACCGCCGAGAGACAAGAAATTCAGATGAAGAAAGTAAAGCTTATTAGCATGCTTGATGAGGTGGAGCAGAGGTACAGACAGTACCACCACCAGATGCAGATAGTGATATCCACTTTCGATCAGGCGGCCGGCGCCGGGTCGGCGAGAACCTACACAGCCCTTGCCCTTCAAACGATCTCAAAGCAATTCCGCTGGTTAAAAGACGCCATCGCCGGCCAAATCCGAGCAGCCAGCAAGAGCTTGGGTGAAGAAGAATGCGTCGGAAAAAAAACGGAAGGTTCCCGGTTGAAATTCGTCGATCATCATCTCCGGCAACAGCGGGCTCTGCAACAATTGGGTATGATCCAACACAATGCTTGGAGACCCCAGAGAGGCTTACCGGAGCGCTCTGTTTCGATTCTTCGCGCTTGGCTTTTCGAACACTTCCTCCACCCTTACCCTAAGGATTCGGATAAACACATGCTCGCTAAGCAAACAGGGCTCACCCGAAGCCAGGTTTCGAATTGGTTCATAAACGCGAGAGTTCGGCTATGGAAGCCAATGGTGGAAGAGATGTACATGGAGGAAATCAAGGATCAAGAACAGAAGGGAGGTGGATCGACACCGGCGACGGTGGGGGAAAGAAACAACGAAGATTCAGTTTCAAAGTCCATGGAGACAGAAAGCCCCAATTCAAAACAAGAGAATTCCCCGAACCAAAACGTTCATCCTTCAGTTTCAATCTCAAATTCCTCCGGGGGAAATGTCCGAAACCCATCTGGGTTTACACTAATTGGAACCTCATCGGAGCTGGATGGAATCACTCAAAGAAGCGCCAAGAAACAGAGAGGCCCCGAAATCCTCCATTCCTCAGACAACAGCGTGGCGTTCATAAACATGGACATCAAACCCCGAGAAGAAGGAGGACAGAATCAACAGAATCAGAACCAAAATCACGATGTACCAATGAAATTCGACGAGGAGAGACAAAACAGAGATGGGTATTCATTTCTAGGCCAACCCCATTTCAACCTCGGCGGATTCGGGCAATACCCAATAGGGGAAATGGCGAGATTCGAGGCGGATGAGTTCACTCCAAGATTCTCCGGCAACAATGGCGTGTCTTTGACTCTAGGGCTTCCCCATTGCGAAAATCTGTCCCTAAACGCAGCAACCCACCAAAGGTTCCTCCCAAATCAGGGCATCCAATTAGGAAGACGAACAGAATTAGGAAAAGCCGCCGATTATTCCGCCATGAACGCCTCCACAACAGCTCATTCCTCCACCGCCTTTGAGACCATGAACATCCAAAATGGAAAACGGTTCGCCGCCCAGTTACTGCCAGACTTCGTGGCCTAA 2079 50.6 MATYLHANSDHFQSPDAALQTLVLRNPTYVQFSDTPPPPPPPSHPNLLFFNSPAPAPAPAAPNSFSTQQFVGIPTSQDNNSHSLNPHHDISAFHGFLPRVQPNIWNSIDPSTAARDSSRAQQGLSLSLSSQHPPGFGSRDVQSHTQQAVSGEETLRISGGSSSSASGVSNGVAGIQGVLISSKYLKAAQELLDEVVNVTQNEIKNESSPRKGNGNQTKMNGDASAATGTADVSLEGEADGKRAVELTTAERQEIQMKKVKLISMLDEVEQRYRQYHHQMQIVISTFDQAAGAGSARTYTALALQTISKQFRWLKDAIAGQIRAASKSLGEEECVGKKTEGSRLKFVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSILRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEIKDQEQKGGGSTPATVGERNNEDSVSKSMETESPNSKQENSPNQNVHPSVSISNSSGGNVRNPSGFTLIGTSSELDGITQRSAKKQRGPEILHSSDNSVAFINMDIKPREEGGQNQQNQNQNHDVPMKFDEERQNRDGYSFLGQPHFNLGGFGQYPIGEMARFEADEFTPRFSGNNGVSLTLGLPHCENLSLNAATHQRFLPNQGIQLGRRTELGKAADYSAMNASTTAHSSTAFETMNIQNGKRFAAQLLPDFVA 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1592554 1595227 + CmaCh14G003610.1 Cma14g00361 307344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00361 692 Pfam Homeobox KN domain 384 423 IPR008422 GO:0003677|GO:0006355
Cma14g00361 692 MobiDBLite consensus disorder prediction 108 168 - -
Cma14g00361 692 Gene3D - 363 441 - -
Cma14g00361 692 MobiDBLite consensus disorder prediction 438 535 - -
Cma14g00361 692 Coils Coil 251 271 - -
Cma14g00361 692 SUPERFAMILY Homeodomain-like 368 434 IPR009057 -
Cma14g00361 692 PANTHER HOMEOTIC PROTEIN, PUTATIVE-RELATED 17 640 - -
Cma14g00361 692 MobiDBLite consensus disorder prediction 203 227 - -
Cma14g00361 692 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 17 640 - -
Cma14g00361 692 ProSiteProfiles 'Homeobox' domain profile. 364 427 IPR001356 GO:0003677
Cma14g00361 692 CDD homeodomain 367 428 IPR001356 GO:0003677
Cma14g00361 692 SMART HOX_1 367 431 IPR001356 GO:0003677
Cma14g00361 692 MobiDBLite consensus disorder prediction 444 515 - -
Cma14g00361 692 MobiDBLite consensus disorder prediction 203 238 - -
Cma14g00361 692 Pfam Associated with HOX 178 318 IPR006563 -
Cma14g00361 692 SMART prehox3 173 319 IPR006563 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00526 Cma14g00361 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00374 Cma-Chr2:1882851 Cma14g00361 Cma-Chr14:1592554 2.96E-109 dispersed
Cma12g00634 Cma-Chr12:3359268 Cma14g00361 Cma-Chr14:1592554 2.48E-42 dispersed
Cma14g00361 Cma-Chr14:1592554 Cma20g00823 Cma-Chr20:3913634 2.18E-106 dispersed
Cma14g00361 Cma-Chr14:1592554 Cma02g01304 Cma-Chr2:7678031 3.59E-157 wgd
Cma14g00361 Cma-Chr14:1592554 Cma20g00147 Cma-Chr20:726212 9.35E-15 wgd
Cma14g00361 Cma-Chr14:1592554 Cma06g00526 Cma-Chr6:2460707 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36191 PF07526 POX 4.60E-47 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00361 - - csv:101208201 1076.23