Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00365 ATGGATCCGGAAAATACACCACTGGGCAGGATGCTGCTGGAAGAGATCACTCCGGTTATCATGGTGCTGAATACCCCACTTGTTGAAGAAGCCTGCCTGAAGAATGGTCTCTCATTCATCCAGATGCTCAGCCCCTTCTGCTCGTTTAACAACATTGACGTGCCCGTACGGACCGCCAGTGATCAACCTTACAGGATTAAGAAATTCAGTTCACGGTTGTTTTACGGTTCGGATATTCGTCAACCAAATTTCGAGGCATCAAAAGAGCGACTGAAACAAGTCATTACACAAGCCAGCGAGAAAGATCTTTCTAAACTATGTTCTGATCCACCTCAAATTAATGAAGCAGTTGACTGTTTTGAGTCTGCAATTCTACCTTCGTGGTTTCAGTTATTTAACAAAGAGCTTATACGTCTTTTGGTTGTCTCTTCAAGCGATGATCATCCTGTCAACAAATTTGTTGACCTCTTTAACACAATCAAATTGGCCTCTCTTCTAAATGATGATGCCATGGACCCTAAGATTATGAAGCATTATTTGTTGTTGCATGATAATCAAGATGGCTCTTCAGAGAAGGCAAGTAAAATACTAACTGAAATGAGGAGTGCGTTCGGTGCGAATGACTGCCAATTACTTTCTATCAATTCTTCTCATGATGAACTCATTGAACGGGAAGATGATCCTTGGGGTTTGTTTAAGCCCGATGTTTTGATTGGTAAGCAACTTGGCTGCTTTCTTAGCAATGAGGATCTAATTGAGATCAGAGAGTTAATGCAAGATTTTTCGTCAAAACATATCATTCCTTACATGGAGCAAAAAATACGAGCATTAAACCAACAGGTGTCTGCTACAAGGAAAGGTTTCAGAAATCAGATCAAAAACTTATGGTGGAGAAAAGGGAAAGAAGACACAGTAGATTCTCCAAGCGGCCCAACGTATACCTATAACTCTATTGAGTCTCAGATTAGAGTTTTGGGTGACTATGCCTTCATGTTGCGGGATTATGAACTTGCATTGTCCAATTATCGCCTGATTTCTACTGATTACAAACTTGATAAAGCTTGGAAACGCTATGCTGGTGTCCAGGAGATGATGGGGCTTACGTACTTTTTGCTAGATCAATCAAGGAAGGAAGCTGAGTATTGCATGGAAAATGCCCTCAATACTTATTTGAAAATGGGCCCCTCTGGTCACCTAAATGCAACACGCTGTGGTCTTTGGTCAGCAGAGATGTTGAAGGCAAGAGAGCAATACAGAGAGGCTGCTGCTGTTTATTTTCGTATTTGTAATGAGGAACCTTTACATTCAGCTGTCATGCTTGAGCAAGCATCTTACTGTTACCTGCTTTCTAAACCTCCTTTGATACGCAAATATGGATTTCATCTTGTTCTCTCTGGTGATCGTTACAAAAGAATGGATCAAGAACAGAATGGAGCCACATCAAAGATCATGTGGTATGCTTCGCTTGGTCTATATGACGTTGCTGTTACTCAAATGCTGGAAATTCTCGACTGTAATCATCAGTCAAAGGCAACGCAGGAATTGTTTCTGAAGGATTTTCTAAAAATTATTCAGATACAGAAGGCAGGAAAGACAGTCAAGGTGTTAAAACTACCATTGCCCAAGATCAGCATTTCATCATTAAAGGTCATCTTTGATGATCATCGAACTTATGCATCACCTACGGCTGCTAATGTTCGAGAAAGCGTATGGCGCTCATTGGAGGAGGACATGATTCCATCGTTATCATCAGGAAGGACAAATTGGTTGGAGTTACAGTCAAAGATTATGTCGAAAAAGTATAAAGAATCAAATATCTGTGTGGCAGGAGAACCTGTGAAAGTGAATATTGTATTTAAAAACCCTCTTCAGATCCCTATTTCCATCTCTTGCGTTTCCCTGATATGTGATCTTTCTTCAAAATCTGACGGAACTAAATCTGATACAAATAACATAACTGCTGGTTTCCAGAATAATACTGAACTCAAGTGGTCATCTGATTGGGAGATGGGATCTAACAATGCTTCATTTACTTCGACTGAAGTTCACCTCTCATTAGAAGGAAATGAAGAAAAAATTGTGCAACTGACAGTTACTCCCAAAATAGAAGGCATCCTACAAGTTGTTGGTATTAGATGGAAACTGTCCGATTCTATCATGGGCTTTCACAATTTTATTAACAATTTAGGACAGAAGAATATTGCGAAGGGGAGACAGAAAGTTAAGTATTCTCTTGCTGATAACCTGAAGTTCATAGTGATCAAGAGTCTACCAAAGCTTGAGGGCAGCATTCTTTCACTTCCTAAAGTTGCATATGCTGGAGATTTACAGCGCCTTGTCCTTGAACTGACGAATCAATCTAAATTTTCTGTAAAGAATCTGAAAATGAAGATCAGTCAATCACGATTCTTGAAAATCGGGAAGCAAGAAAATATGAATGCAGACTTTCCTGCTTGCTTGGAGAAGCCAATTAATGGTGAACAGGGAGTACGCCCTATACCTAATACAACATCAAATGATACATTTTTGTTTCCAGTGGACACTTCAATTCAAGGCGGAACACCCTTATTGTTGCCCCTTTGGCTTCGAGCTGCTGTTCCTGGAAATATATCCTTATACATAAGTATATATTATGAGATGGAAGGTGTATCAGATATCATGAGATATCGCATTCTACGCATGCATTACAATATTCAGGTTTTGCCATCCCTGGATTTATCGTTCCAAGTCAATCCATGTCCATCAAGATTGCATGAGTTTCTTGTCCGAATGGATGTTATGAACAAGACTAGCTCCGAGGTTTTCCAAATTCATCAGTTGTCATCTATTGGACAGAACTGGGAACTTTCGTTACTTCAACCTGTTGATAATATTTTTCCTTCTCGAGCTTTAATGCCTAATCAAGCATTGTCATGTTTCTTCGTTCTCAAGAATGTTAACAAATTGTTCAGTTCTGAAAAAAAAGTATCTTCTGTCCCGGTGCTACTTGGAAGTGATCTAAAGTTGGGTTCTCAGAGTAGCGATGAACAGCTCTTTGATACGGCTAATTTTCCTCTAGCTGCTTTCCATTATTCTGAAAGAGCATACCAAGGAACTTCAAACCAGGACCTAAATACAGTAGACTTTATATTGATCACTCGGCCACTTAAGAATACTACTGATCCTGGAGTTTCTGAATCATCGCGTCTATTCTCTCATCATGTGTGCCATTGCAGTACTTCAAGCAACAGTCCTATATCTTGGCTACTTGAAGGGCCTCGGAGTTCATATCACAACTTCTCTTCTTCTTTCAGCGAAATCAATTTCAAAATGACAATCTTTAACTCTTCAGATTCAATTGCATCCATACGCATTAAAACAATTGACTCAGCTGAAGGTAATGAATCTGCTCCTCCATCCCCTAGCTCTGCGAACCAAACAGGATGGCACTATGCCTCACTTACACAGGACATTAAGGTCACATCTGATGTTCTGGGAGCACAAATGGCTAAGTCATCTTCACTTGAAAGTGTCTCTCCATTTATCTGGTCCGGAACAAGCTCAACAACACTACAAATTGAACCCAACTCCATGGCTGAAGCTCCTCTTCAGATCTGTATCTTTTCTCCTGGAATATATGATCTCTCAAACTATATTTTACAGTGGAAACTTCTGCCGTCATCTCGATCAGGAAACGACGAAACTAACGTCTCATCAGGAACTTGCCAGGGCTATCCATACTATCTTACTGGGAGAGGAGGAGAGATTAGAGAGCGAAAGAGATCGAAAACGACCAAGTCAAAGGCAGTCTCCAAACGCCACTCTTCCGCCCACCCCATTGACTTCTCTTTGTCCGCTTCAGATTCCTCGGTTTGTAGTCCATTTGACCCAGATTCCCGCTTTTCTCATATAACCCTTCAATTCCTCTTCTGGAAGAAATTCAAAGGGCTGCCAATGAACGATTTGTTCTCTTCTCGCTCTTTCTCCCGCGACAGCCATGTCGTTGAGATGGGCAACGCCTCCTCTTCTCCCACTGCTGTTAATCTCGACAAGTTCTTTGAAGATGTTGAGTCCGTTAAAGATGAGCTCAAGGAGCTTGATCGACTCTGCAGCAAACTCCATGACTCCCATGAACAGAGCAAGACGCTTCACAATGCTAAGGCTGTCAAAGACCTCCGATCTCGCATGGATTCCGATGTTTCTCTTGCTCTCAAGAAGGCCAAACTCATTAAGGTCCGATTGGAGGCTCTTGATCGCTCCAATGCCGCCAATCGGAGCCTCCCGGGTTGCGGCCCTGGTTCCTCTTCTGATCGAACTCGGACTTCTGTAGTCAACGGCTTGAGGAAGAAATTGCAGGATTCCATGGAGAGCTTCAACAATCTCAGGCAACAGATCTCCTCCGAGTACAGGGAGACCGTTCAGCGAAGATATTTCACTGTTACTGGTGAAAATCCGGACGAGAAGACCATTGACATATTGATATCTACAGGTGAAAGTGAGACATTTTTGCAGAAAGCCATTCAAGAACAAGGCAGAGGCAGAATCTTAGACACCATTAGCGAGATCCAGGAGAGGCATGATGCTGTAAAAGACCTGGAAAGGAACCTCAAGGAGCTGCACCAGGTTTTCATGGACATGGCAGTCTTGGTGCACGAACAAGGCGAGAAACTCGACGACATCGAGAGCCAAGTGAACCGTGCTCATTCTTTTGTCCGAGGTGGTACACAGGAGTTGACTACAGCCAGAGTGTACCAGAAAAACACCCGAAAATGGACAATTATTGGCATCATCATTTTGCTCATCATTGTCTTGATTATTGTCCTCAGCCTTCGCCCTTGGAAGAACAATAACAGCCTCGTAGTCTCCTGCCAAAAAACTCTCGATCGAGCCCTCACGCCATTCCACAGACATCAGGATCCTTTCATCTATACATGGAGAGATCAGAGATGGAGTGGCTTGTTTGATGAAAACCTTGAGGGCCTTGATGTGTCATTGAATAGCCAGGAATGGTTCCTGTTGACATTATTGTATACTCCCTTTGGATTTTTGGATTCTTTTGTTCGAGGTCATTTCTCTCTCTTTACCTTACGAATTCGAAGCAATTTCAAGCAACTTCAATCAAAGCTCATCTTTCTAGATCTTCTCTCGCTTTCGAGCATGGGAACACTGCGAATGATAGCCCGCCAAACGCTATCATTTCCCGCTTCTTTACACAATCGAGCTGCAATTAACTCTTTTCGCCTTTCTATCAATGCTGTCTCGCAGATATTGCGGTCAATTTTACAGTATTTTGAATGCACAGATGGTATGTTCAAAGGAATCTACCACGGGAAGCAATACCACGCAGCTGACATAGCAGCTGTATTGAGCAGGGCTTGGAGTGCTGGCGTTCAGCGAATCATTGTGACTGGTGGATCACTCGAGGAATCAAGGGAGGCCCTTAAAATTGCAGAAACAGATGGAAGGCTTTTTTGTACTGTGGGTGTGCATCCAACAAGATGCAAGGAATTTGAAGAGAGTGGTGACCCAGAAACCTATTTTCAGGCTCTTCTTTCATTGACCAAAGAGGGAATTGAGAAAGGAAAGGTCGTTGCAGTTGGTGAATGTGGATTAGATTATGATAGGCTTCACTTTTGCCCTGCCGATGTTCAAAAGAAATATTTCGAGAAGCAGTTTGAATTAGCAAACGCAACAAAGCTTCCTATGTTTCTACACATGCGTGCAGCTGCTGAGGATTTTTGTGGTATTGTAGAGAGAAATAAGCAAAGGTTTTGTGCTGGAGTTGTTCATTCTTTCACAGATAGTGCAGAAGATCGTGACAGGCTTCTGCTATTCAGTAATTTGTACATAGGGATTAATGGTTGCTCCCTGAAAACTGCGGAAAACCTTGATGTCGTGAGGGGTATACCAATTGAGAGATTGATGATTGAGACGGACTCTCCGTATTGTGAAATCAAGAATACACATGCTGGGATTAAGTTTGTTAAGTCTGTCTGGGCTTCTAAGAAGAAAGAGAAGCATGACGAGCAGTGCATAGTGAAAGGCCGGAATGAACCATGTTTAGTTCGGCAAGTTCTTGAGGTCATGGCTGGATGCAAAGGCATTACAGATATCAATCAGCTTAGTGAAACTTTGTACCACAATACTTGCAGAGTTTTCTTTCCTCAAGACCTGGACTCTGCAGCAGATGCCCTCCTTGCTGGTTCTCATGCACTGATACTTGTAAGCAATTCATTGCTGTCGATGGTATTCTCAGTCCTTGTGAATGCTGCTGGAGAAGTTGGGGCCCGGTCTGCAGCCATGTTCAAACGAAGTGGTCGCCCTTCAACTTCC 6312 42.4 MDPENTPLGRMLLEEITPVIMVLNTPLVEEACLKNGLSFIQMLSPFCSFNNIDVPVRTASDQPYRIKKFSSRLFYGSDIRQPNFEASKERLKQVITQASEKDLSKLCSDPPQINEAVDCFESAILPSWFQLFNKELIRLLVVSSSDDHPVNKFVDLFNTIKLASLLNDDAMDPKIMKHYLLLHDNQDGSSEKASKILTEMRSAFGANDCQLLSINSSHDELIEREDDPWGLFKPDVLIGKQLGCFLSNEDLIEIRELMQDFSSKHIIPYMEQKIRALNQQVSATRKGFRNQIKNLWWRKGKEDTVDSPSGPTYTYNSIESQIRVLGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFLLDQSRKEAEYCMENALNTYLKMGPSGHLNATRCGLWSAEMLKAREQYREAAAVYFRICNEEPLHSAVMLEQASYCYLLSKPPLIRKYGFHLVLSGDRYKRMDQEQNGATSKIMWYASLGLYDVAVTQMLEILDCNHQSKATQELFLKDFLKIIQIQKAGKTVKVLKLPLPKISISSLKVIFDDHRTYASPTAANVRESVWRSLEEDMIPSLSSGRTNWLELQSKIMSKKYKESNICVAGEPVKVNIVFKNPLQIPISISCVSLICDLSSKSDGTKSDTNNITAGFQNNTELKWSSDWEMGSNNASFTSTEVHLSLEGNEEKIVQLTVTPKIEGILQVVGIRWKLSDSIMGFHNFINNLGQKNIAKGRQKVKYSLADNLKFIVIKSLPKLEGSILSLPKVAYAGDLQRLVLELTNQSKFSVKNLKMKISQSRFLKIGKQENMNADFPACLEKPINGEQGVRPIPNTTSNDTFLFPVDTSIQGGTPLLLPLWLRAAVPGNISLYISIYYEMEGVSDIMRYRILRMHYNIQVLPSLDLSFQVNPCPSRLHEFLVRMDVMNKTSSEVFQIHQLSSIGQNWELSLLQPVDNIFPSRALMPNQALSCFFVLKNVNKLFSSEKKVSSVPVLLGSDLKLGSQSSDEQLFDTANFPLAAFHYSERAYQGTSNQDLNTVDFILITRPLKNTTDPGVSESSRLFSHHVCHCSTSSNSPISWLLEGPRSSYHNFSSSFSEINFKMTIFNSSDSIASIRIKTIDSAEGNESAPPSPSSANQTGWHYASLTQDIKVTSDVLGAQMAKSSSLESVSPFIWSGTSSTTLQIEPNSMAEAPLQICIFSPGIYDLSNYILQWKLLPSSRSGNDETNVSSGTCQGYPYYLTGRGGEIRERKRSKTTKSKAVSKRHSSAHPIDFSLSASDSSVCSPFDPDSRFSHITLQFLFWKKFKGLPMNDLFSSRSFSRDSHVVEMGNASSSPTAVNLDKFFEDVESVKDELKELDRLCSKLHDSHEQSKTLHNAKAVKDLRSRMDSDVSLALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQQISSEYRETVQRRYFTVTGENPDEKTIDILISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLERNLKELHQVFMDMAVLVHEQGEKLDDIESQVNRAHSFVRGGTQELTTARVYQKNTRKWTIIGIIILLIIVLIIVLSLRPWKNNNSLVVSCQKTLDRALTPFHRHQDPFIYTWRDQRWSGLFDENLEGLDVSLNSQEWFLLTLLYTPFGFLDSFVRGHFSLFTLRIRSNFKQLQSKLIFLDLLSLSSMGTLRMIARQTLSFPASLHNRAAINSFRLSINAVSQILRSILQYFECTDGMFKGIYHGKQYHAADIAAVLSRAWSAGVQRIIVTGGSLEESREALKIAETDGRLFCTVGVHPTRCKEFEESGDPETYFQALLSLTKEGIEKGKVVAVGECGLDYDRLHFCPADVQKKYFEKQFELANATKLPMFLHMRAAAEDFCGIVERNKQRFCAGVVHSFTDSAEDRDRLLLFSNLYIGINGCSLKTAENLDVVRGIPIERLMIETDSPYCEIKNTHAGIKFVKSVWASKKKEKHDEQCIVKGRNEPCLVRQVLEVMAGCKGITDINQLSETLYHNTCRVFFPQDLDSAADALLAGSHALILVSNSLLSMVFSVLVNAAGEVGARSAAMFKRSGRPSTS 2104
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1632018 1661970 + CmaCh14G003650.1 Cma14g00365 307348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00365 2104 CDD TatD_DNAse 1775 2047 IPR001130 GO:0016788
Cma14g00365 2104 SUPERFAMILY Metallo-dependent hydrolases 1774 2047 IPR032466 -
Cma14g00365 2104 ProSitePatterns TatD deoxyribonuclease family signature 2. 1894 1904 IPR018228 -
Cma14g00365 2104 Gene3D - 1340 1472 - -
Cma14g00365 2104 CDD SynN 1342 1499 IPR006011 GO:0016020
Cma14g00365 2104 ProSitePatterns Syntaxin / epimorphin family signature. 1518 1557 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cma14g00365 2104 PANTHER TRANSPORT PROTEIN TRAPP 8 1243 IPR024420 -
Cma14g00365 2104 Gene3D - 1755 2053 - -
Cma14g00365 2104 Coils Coil 1437 1461 - -
Cma14g00365 2104 Coils Coil 1515 1535 - -
Cma14g00365 2104 CDD SNARE_syntaxin1-like 1511 1573 - -
Cma14g00365 2104 SUPERFAMILY t-snare proteins 1341 1567 IPR010989 GO:0016020|GO:0016192
Cma14g00365 2104 Pfam Syntaxin 1344 1547 IPR006011 GO:0016020
Cma14g00365 2104 Gene3D - 1509 1603 - -
Cma14g00365 2104 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 1512 1574 IPR000727 -
Cma14g00365 2104 SMART tSNARE_6 1507 1574 IPR000727 -
Cma14g00365 2104 Pfam ER-Golgi trafficking TRAPP I complex 85 kDa subunit 150 477 IPR024420 -
Cma14g00365 2104 Pfam TatD related DNase 1775 2046 IPR001130 GO:0016788
Cma14g00365 2104 ProSitePatterns TatD deoxyribonuclease family signature 3. 1958 1974 IPR018228 -
Cma14g00365 2104 Coils Coil 1342 1369 - -
Cma14g00365 2104 SMART SynN_4 1337 1463 IPR006011 GO:0016020
Cma14g00365 2104 Pfam SNARE domain 1549 1600 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00530 Cma-Chr6:2498494 Cma14g00365 Cma-Chr14:1632018 1.65E-07 dispersed
Cma13g00676 Cma-Chr13:6245413 Cma14g00365 Cma-Chr14:1632018 3.27E-107 dispersed
Cma14g00365 Cma-Chr14:1632018 Cma18g00344 Cma-Chr18:1843481 2.75E-109 dispersed
Cma06g01160 Cma-Chr6:7810343 Cma14g00365 Cma-Chr14:1632018 7.90E-07 transposed
Cma14g00365 Cma-Chr14:1632018 Cma06g00529 Cma-Chr6:2476680 0 wgd
Cma14g00365 Cma-Chr14:1632018 Cma07g00822 Cma-Chr7:3806629 2.78E-136 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00365 K20305 - csv:101219226 2137.07