Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma14g00369 | ATGAACAACTCCACAGGCTCCGGCGGATCAGATGCCTCCGGCAACGTCGGCACTTTCCCCTACATAGTCGGAATTTCAGTCGGAGTTCTTTTCCTTCTCACAACCGTAACAATCGCCACCTATTTATGCACCAGAACCACCGTTCCGCAGCTGAATCGCCGTCGTCGGCCGGGGGAACGGCGGGATGTCATCGTCGATTTCGGACCGGGGCTCGAAGATGAGGCCATTAATGAATATCCGAAGATTCTGTACTCGGAAAAGAAATTGGAGGGAAAAATGGAGTCTGCCGCCGCGAGCGGTTGTTCGATTTGTTTGGGGGACTATAAAAACGAGGATGTTCTACGGTTGTTGCCGGATTGTGGTCATATGTTTCACAGCGGCTGTATCGATCCGTGGTTAAGGCTGAACCCTAGCTGCCCTGTTTGCAGAACTTCGCCCGTCCCGACGCCGCTTTCCACCCCTCTGGCGGAGGTGGTTCCGTTGGCCAACGGAAGGAGTTGA | 501 | 54.29 | MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQLNRRRRPGERRDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDCGHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS | 166 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 1676587 | 1677087 | + | CmaCh14G003690.1 | Cma14g00369 | 307352 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma14g00369 | 166 | Pfam | Ring finger domain | 101 | 143 | IPR001841 | - | |
| Cma14g00369 | 166 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 9 | 164 | IPR045899 | - | |
| Cma14g00369 | 166 | PANTHER | RING-H2 FINGER PROTEIN ATL71-RELATED | 9 | 164 | - | - | |
| Cma14g00369 | 166 | SUPERFAMILY | RING/U-box | 75 | 148 | - | - | |
| Cma14g00369 | 166 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 65 | 148 | IPR013083 | - | |
| Cma14g00369 | 166 | ProSiteProfiles | Zinc finger RING-type profile. | 101 | 143 | IPR001841 | - | |
| Cma14g00369 | 166 | SMART | ring_2 | 101 | 142 | IPR001841 | - | |
| Cma14g00369 | 166 | CDD | RING-H2_PA-TM-RING | 101 | 143 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma06g01023 | Cma-Chr6:6909400 | Cma14g00369 | Cma-Chr14:1676587 | 1.72E-32 | dispersed | |
| Cma14g00369 | Cma-Chr14:1676587 | Cma14g02071 | Cma-Chr14:14374980 | 1.61E-30 | dispersed | |
| Cma14g00369 | Cma-Chr14:1676587 | Cma03g01117 | Cma-Chr3:7611890 | 3.18E-50 | wgd | |
| Cma14g00369 | Cma-Chr14:1676587 | Cma07g00821 | Cma-Chr7:3804669 | 4.14E-41 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma14g00369 | - | - | mdm:103454174 | 196.052 |