Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00410 ATGGAGTTGGCTTTGAGCCTCGGCGATGCGCCCATTTCCAATAAGCCATTTGGGTTTCTCTCTAATGGAGTTTCTAAGCTCTCCTCCTCTTCTTCTTCCTCTCTAATGGCTTTAGGGTTTTGTGTTGGTTTGGCTCATGATTCTGCTTCCGCTTCCGCTTCCGGTTCGCCTTCTGGTTCTGTTCATGACGACGACGATGAAGAAGATGATGATAATCATGATCGGAAAATGGTTCTTTCCGGTTCGGATCCGCCGGTTCAGCTGGATCTTCTTCCTTCAGCTCCTGTTCCTCGTTCTTCTCATCTCCGATTTCCATGGCTTTCCGATCACTTAATCCCAGAAGGAGAAGAAAGGGTAGCGCTGGATGTAAACCGGCGCCCTGCGGTGGCGGCTGCGGAGGAGACAGAAGACAGGGCGACGGTGACGGCGGCGTTGTCATCTCCGAACAGTACGGTTTCGTCTTTCCAGATGGATTTTGGGGTCAGAGCTTCCTCAAGAATCAGTGACGATGAAGAAAATGGGTCTGCAAGAAAAAAGCTTCGACTTTCTAAAGATCAATCGGCTTTTCTTGAAGAAAGCTTCAAAGAACATAGCACTCTCAATCCAAAGCAGAAGCTAGCACTAGCCAAGCAGCTCAACCTCCGACCAAGACAAGTGGAAGTTTGGTTCCAAAATAGAAGAGCTAGGACAAAGTTGAAGCAGACAGAAGTAGATTGTGAGTATTTAAGGAGATGTTGTGAGACATTGACAGAAGAGAACAGAAGATTACAAAAGGAGCTTCAAGAATTAAGAGCTTTAAAAACATCTCAGCCCTTTTACATGCAGCTTCCGGCCACCACCCTCACCATGTGTCCGTCGTGCGAGCGCGTCGCCACCACCACTCCTGCTGCCTCTGTTGCTACCAAAACCACCGCCACCGTCGCCACCACCGCCACTGCCCCCAACCCAGCGGCTCTATGCCTTGCAAACAAGGCGAGGATCTTGCCATTTCCTCATTTGCATCAAGCTGCCTCATAA 1017 49.46 MELALSLGDAPISNKPFGFLSNGVSKLSSSSSSSLMALGFCVGLAHDSASASASGSPSGSVHDDDDEEDDDNHDRKMVLSGSDPPVQLDLLPSAPVPRSSHLRFPWLSDHLIPEGEERVALDVNRRPAVAAAEETEDRATVTAALSSPNSTVSSFQMDFGVRASSRISDDEENGSARKKLRLSKDQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATTTPAASVATKTTATVATTATAPNPAALCLANKARILPFPHLHQAAS 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1912100 1913605 - CmaCh14G004100.1 Cma14g00410 307393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00410 338 ProSiteProfiles 'Homeobox' domain profile. 173 233 IPR001356 GO:0003677
Cma14g00410 338 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 55 312 - -
Cma14g00410 338 Pfam Homeobox associated leucine zipper 233 267 IPR003106 GO:0006355|GO:0043565
Cma14g00410 338 Pfam Homeodomain 177 231 IPR001356 GO:0003677
Cma14g00410 338 CDD homeodomain 177 234 IPR001356 GO:0003677
Cma14g00410 338 Coils Coil 239 269 - -
Cma14g00410 338 Gene3D - 181 231 - -
Cma14g00410 338 MobiDBLite consensus disorder prediction 49 94 - -
Cma14g00410 338 ProSitePatterns 'Homeobox' domain signature. 208 231 IPR017970 GO:0000981|GO:0006355
Cma14g00410 338 SUPERFAMILY Homeodomain-like 156 234 IPR009057 -
Cma14g00410 338 SMART HOX_1 175 237 IPR001356 GO:0003677
Cma14g00410 338 SMART halz 233 276 IPR003106 GO:0006355|GO:0043565
Cma14g00410 338 PANTHER - 55 312 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00108 Cma14g00410 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00207 Cma-Chr1:941182 Cma14g00410 Cma-Chr14:1912100 2.80E-58 dispersed
Cma08g00556 Cma-Chr8:3178646 Cma14g00410 Cma-Chr14:1912100 3.58E-97 dispersed
Cma14g00410 Cma-Chr14:1912100 Cma16g01122 Cma-Chr16:8618431 7.91E-75 dispersed
Cma14g00410 Cma-Chr14:1912100 Cma17g00930 Cma-Chr17:6988226 2.48E-106 wgd
Cma14g00410 Cma-Chr14:1912100 Cma06g00108 Cma-Chr6:584033 1.48E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36195 PF00046 Homeodomain 1.20E-15 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00410 K09338 - csv:101222778 358.992