Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00411 ATGGATTCTGTCAAATGTTCATTGATTGAAGAAGAAACTAAGCTGGTGCCGCCAATCGCACGGCGCCACACACGCTTCTTCATCAGATCTCAGCCGCTCGATTCCATCGCTGATCGGTGGGCGGACCTTTCACGGCGAATCAGCTCGAACGCAGCGGGGTCTGAGGGGAAGACAAAGCCGCTTTCGAACTCGGTTCTTCAAATTGAAGATGTGAATTTAGCTGATTTGACTGAGGATCCTGTTCATAGATTTGGGGAAGCTATCAGGTTTAGGACGAGACAGCGGTGGCGAAGGCGTCAAGTCCAAATTCCTTCTGAGACTCAGAATATTACTATGGAATTGAGTGAAATCATGGTCAATTCAGGCAATGGGAATACATTGCAGCCATTACAGGCTGGTGAGGGCAGTATCACTGCTGAGGAAAGGAAGAACGAAGCGGGGAAAACATGTGAAATCAACAATGAAGCTCTGGAAGATGAAAAGACAGAGAATAAAAGTGATGTTGAAAAGGGCAGCGATTCTGATGGGAGTTTCTTTGATTGCAATATATGTCTGGATTTGGCTAGGGACCCCGTTGTAACTTGTTGCGGTCATCTTTACTGTTGGCCGTGCCTTTATCGATGGTTACATCTACATTCAGAGGCTAAGGAATGCCCTGTATGTAAAGGAGAGGTCACTACAAAAAACGTAACTCCGATCTATGGGCGTGGTGGTAATACCCCCGTGACAGAGGAGGATGCTACACTTAAGATTCCTCTAAGGCCCCACGCTCGGAAAGTTGAAAGTTTGAGGCAAACCATCCAGAGGACTGCATTGAGTTTCCCAGTGGAGGATATGATTCGTCGATTGGGAAACAGATTTGATTTTAATCGTGACCTTGACCAACCGCCTGAACCAGACAGCTCACACGAAACCTTTGGTAGATCTCCAACCTTGTTGAATAGGCTTTTAACATCCAGGGGAATTCGTAGAGAACAAATTTCACTGCCCCCCCATGATGATGTAGGAGATTTATCACACGCCGATGTGTCTGGCATTGAGACTGGGGAAACCCGTCTTCAGTCTCTCCCCGTGCTTCGATCATTACTACACCGGACAAGAGTTTCTTCTCTTACTTCTGCATTTAACTCCACTGATAGGCTTCCAGATGGTCTTCTATATACCGATCCGCTCATTCCTAGAATTCAAGAGCAGCCTCCTCCACCTGTTGAGGATAGAGATTCATTCTCTAGCATTGCTGCTGTTATCAATTCAGAGAGTCAAATGGACACTGCTGTAGAAATTGATTCCATGGTCTCCATTTCAACTTCATCCTCCAGAAGGAGAACTGATGCCTTACAGGTTTCTGATGTCGACAGTGGAAACTCTCGGGCACCCAGACGGAGAAGATTGGCTTGA 1398 46.57 MDSVKCSLIEEETKLVPPIARRHTRFFIRSQPLDSIADRWADLSRRISSNAAGSEGKTKPLSNSVLQIEDVNLADLTEDPVHRFGEAIRFRTRQRWRRRQVQIPSETQNITMELSEIMVNSGNGNTLQPLQAGEGSITAEERKNEAGKTCEINNEALEDEKTENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSEAKECPVCKGEVTTKNVTPIYGRGGNTPVTEEDATLKIPLRPHARKVESLRQTIQRTALSFPVEDMIRRLGNRFDFNRDLDQPPEPDSSHETFGRSPTLLNRLLTSRGIRREQISLPPHDDVGDLSHADVSGIETGETRLQSLPVLRSLLHRTRVSSLTSAFNSTDRLPDGLLYTDPLIPRIQEQPPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSISTSSSRRRTDALQVSDVDSGNSRAPRRRRLA 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1923257 1925939 - CmaCh14G004110.1 Cma14g00411 307394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00411 465 ProSitePatterns Zinc finger RING-type signature. 196 205 IPR017907 -
Cma14g00411 465 SMART ring_2 181 221 IPR001841 -
Cma14g00411 465 MobiDBLite consensus disorder prediction 290 310 - -
Cma14g00411 465 MobiDBLite consensus disorder prediction 434 465 - -
Cma14g00411 465 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 236 IPR013083 -
Cma14g00411 465 PANTHER OS01G0830200 PROTEIN 57 456 - -
Cma14g00411 465 SUPERFAMILY RING/U-box 177 234 - -
Cma14g00411 465 Pfam Zinc finger, C3HC4 type (RING finger) 181 226 - -
Cma14g00411 465 CDD RING-HC_AtRMA_like 179 223 - -
Cma14g00411 465 MobiDBLite consensus disorder prediction 434 454 - -
Cma14g00411 465 ProSiteProfiles Zinc finger RING-type profile. 181 222 IPR001841 -
Cma14g00411 465 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 57 456 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00411 Cma-Chr14:1923257 Cma12g00497 Cma-Chr12:2578149 1.58E-27 dispersed
Cma11g01553 Cma-Chr11:10101587 Cma14g00411 Cma-Chr14:1923257 1.64E-07 transposed
Cma14g01031 Cma-Chr14:5440296 Cma14g00411 Cma-Chr14:1923257 4.67E-34 transposed
Cma14g00411 Cma-Chr14:1923257 Cma06g00107 Cma-Chr6:576243 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00411 K10666 - csv:101220497 729.939