Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma14g00411 | ATGGATTCTGTCAAATGTTCATTGATTGAAGAAGAAACTAAGCTGGTGCCGCCAATCGCACGGCGCCACACACGCTTCTTCATCAGATCTCAGCCGCTCGATTCCATCGCTGATCGGTGGGCGGACCTTTCACGGCGAATCAGCTCGAACGCAGCGGGGTCTGAGGGGAAGACAAAGCCGCTTTCGAACTCGGTTCTTCAAATTGAAGATGTGAATTTAGCTGATTTGACTGAGGATCCTGTTCATAGATTTGGGGAAGCTATCAGGTTTAGGACGAGACAGCGGTGGCGAAGGCGTCAAGTCCAAATTCCTTCTGAGACTCAGAATATTACTATGGAATTGAGTGAAATCATGGTCAATTCAGGCAATGGGAATACATTGCAGCCATTACAGGCTGGTGAGGGCAGTATCACTGCTGAGGAAAGGAAGAACGAAGCGGGGAAAACATGTGAAATCAACAATGAAGCTCTGGAAGATGAAAAGACAGAGAATAAAAGTGATGTTGAAAAGGGCAGCGATTCTGATGGGAGTTTCTTTGATTGCAATATATGTCTGGATTTGGCTAGGGACCCCGTTGTAACTTGTTGCGGTCATCTTTACTGTTGGCCGTGCCTTTATCGATGGTTACATCTACATTCAGAGGCTAAGGAATGCCCTGTATGTAAAGGAGAGGTCACTACAAAAAACGTAACTCCGATCTATGGGCGTGGTGGTAATACCCCCGTGACAGAGGAGGATGCTACACTTAAGATTCCTCTAAGGCCCCACGCTCGGAAAGTTGAAAGTTTGAGGCAAACCATCCAGAGGACTGCATTGAGTTTCCCAGTGGAGGATATGATTCGTCGATTGGGAAACAGATTTGATTTTAATCGTGACCTTGACCAACCGCCTGAACCAGACAGCTCACACGAAACCTTTGGTAGATCTCCAACCTTGTTGAATAGGCTTTTAACATCCAGGGGAATTCGTAGAGAACAAATTTCACTGCCCCCCCATGATGATGTAGGAGATTTATCACACGCCGATGTGTCTGGCATTGAGACTGGGGAAACCCGTCTTCAGTCTCTCCCCGTGCTTCGATCATTACTACACCGGACAAGAGTTTCTTCTCTTACTTCTGCATTTAACTCCACTGATAGGCTTCCAGATGGTCTTCTATATACCGATCCGCTCATTCCTAGAATTCAAGAGCAGCCTCCTCCACCTGTTGAGGATAGAGATTCATTCTCTAGCATTGCTGCTGTTATCAATTCAGAGAGTCAAATGGACACTGCTGTAGAAATTGATTCCATGGTCTCCATTTCAACTTCATCCTCCAGAAGGAGAACTGATGCCTTACAGGTTTCTGATGTCGACAGTGGAAACTCTCGGGCACCCAGACGGAGAAGATTGGCTTGA | 1398 | 46.57 | MDSVKCSLIEEETKLVPPIARRHTRFFIRSQPLDSIADRWADLSRRISSNAAGSEGKTKPLSNSVLQIEDVNLADLTEDPVHRFGEAIRFRTRQRWRRRQVQIPSETQNITMELSEIMVNSGNGNTLQPLQAGEGSITAEERKNEAGKTCEINNEALEDEKTENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSEAKECPVCKGEVTTKNVTPIYGRGGNTPVTEEDATLKIPLRPHARKVESLRQTIQRTALSFPVEDMIRRLGNRFDFNRDLDQPPEPDSSHETFGRSPTLLNRLLTSRGIRREQISLPPHDDVGDLSHADVSGIETGETRLQSLPVLRSLLHRTRVSSLTSAFNSTDRLPDGLLYTDPLIPRIQEQPPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSISTSSSRRRTDALQVSDVDSGNSRAPRRRRLA | 465 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 1923257 | 1925939 | - | CmaCh14G004110.1 | Cma14g00411 | 307394 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma14g00411 | 465 | ProSitePatterns | Zinc finger RING-type signature. | 196 | 205 | IPR017907 | - | |
Cma14g00411 | 465 | SMART | ring_2 | 181 | 221 | IPR001841 | - | |
Cma14g00411 | 465 | MobiDBLite | consensus disorder prediction | 290 | 310 | - | - | |
Cma14g00411 | 465 | MobiDBLite | consensus disorder prediction | 434 | 465 | - | - | |
Cma14g00411 | 465 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 131 | 236 | IPR013083 | - | |
Cma14g00411 | 465 | PANTHER | OS01G0830200 PROTEIN | 57 | 456 | - | - | |
Cma14g00411 | 465 | SUPERFAMILY | RING/U-box | 177 | 234 | - | - | |
Cma14g00411 | 465 | Pfam | Zinc finger, C3HC4 type (RING finger) | 181 | 226 | - | - | |
Cma14g00411 | 465 | CDD | RING-HC_AtRMA_like | 179 | 223 | - | - | |
Cma14g00411 | 465 | MobiDBLite | consensus disorder prediction | 434 | 454 | - | - | |
Cma14g00411 | 465 | ProSiteProfiles | Zinc finger RING-type profile. | 181 | 222 | IPR001841 | - | |
Cma14g00411 | 465 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 57 | 456 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma14g00411 | Cma-Chr14:1923257 | Cma12g00497 | Cma-Chr12:2578149 | 1.58E-27 | dispersed | |
Cma11g01553 | Cma-Chr11:10101587 | Cma14g00411 | Cma-Chr14:1923257 | 1.64E-07 | transposed | |
Cma14g01031 | Cma-Chr14:5440296 | Cma14g00411 | Cma-Chr14:1923257 | 4.67E-34 | transposed | |
Cma14g00411 | Cma-Chr14:1923257 | Cma06g00107 | Cma-Chr6:576243 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma14g00411 | K10666 | - | csv:101220497 | 729.939 |