Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00415 ATGTCCGTACATCATATTCGGATTCGTCTCATCGTTCATTGCCATCGCCATTGCCATCACCTCAACAGTTTCGAGTTCACAAAGCTTTATTCATTTCAAAGACCATTCGCAATGGCAGATTCCGAGGATATTCAGCCGCTCGTTTGCGATAATGGAACAGGGATGGTCAAGGCTGGATTTGCTGGAGACGATGCTCCAAGGGCTGTATTTCCTAGCATCGTTGGACGCCCCAGACACACTGGCGTTATGGTTGGTATGGGCCAAAAGGATGCCTATGTTGGTGATGAGGCTCAATCGAAGAGAGGTATTTTGACTTTAAAATATCCCATTGAGCATGGTATAGTTAGCAATTGGGATGATATGGAAAAAATTTGGCATCACACTTTCTACAATGAGCTTCGAGTTGCTCCAGAAGAGCATCCAGTTCTGCTCACCGAAGCACCCCTGAATCCCAAGGCGAATAGAGAGAAAATGACCCAAATAATGTTCGAGACTTTCAACGCCCCCGCTATGTATGTTGCTATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGCACAACTGGGATTGTTATGGATTCTGGTGATGGTGTCAGCCACACAGTTCCAATCTACGAAGGTTATGCTCTCCCACATGCAATCCTCCGTCTAGACCTGGCTGGCCGCGATCTCACAGATGCTCTAATGAAAATCCTGACTGAACGTGGTTACTCTTTCACCACCAGCGCGGAGCGTGAAATTGTGAGAGATATGAAGGAGAAACTAGCTTACATAGCCCTGGACTATGAGCAAGAGCTAGAGACATCAAAAACCAGCTCTTCTGTGGAGAAGAGCTATGAACTACCAGATGGACAGGTGATCACCATTGGAGCTGAAAGATTCCGATGCCCTGAAGTCCTCTTCCAGCCATCCATGATTGGAATGGAAGCAGCTGGTATTCATGAAACCACATATAACTCTATCATGAAATGTGATGTCGATATTAGAAAGGATCTCTATGGCAATATTGTCCTCAGTGGTGGTTCCACCATGTTCACTGGCATTGCTGACAGGATGAGCAAGGAGATCACTGCATTGGCTCCTAGTAGCATGAAGATCAAAGTGGTAGCTCCACCTGAAAGAAAGTACAGTGTCTGGATTGGCGGCTCTATTTTAGCTTCCCTCAGCACTTTCCAACAGATGTGGATTGCTAAGGCGGAATATGATGAATCTGGGCCATCAATTGTCCACAGGAAATGCTTCTGA 1245 46.43 MSVHHIRIRLIVHCHRHCHHLNSFEFTKLYSFQRPFAMADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFTGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1949873 1954048 + CmaCh14G004150.1 Cma14g00415 307398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00415 414 Pfam Actin 42 414 IPR004000 -
Cma14g00415 414 ProSitePatterns Actins signature 1. 92 102 IPR004001 -
Cma14g00415 414 ProSitePatterns Actins and actin-related proteins signature. 143 155 IPR020902 -
Cma14g00415 414 CDD NBD_sugar-kinase_HSP70_actin 47 220 - -
Cma14g00415 414 Gene3D - 177 377 - -
Cma14g00415 414 PRINTS Actin signature 100 122 IPR004000 -
Cma14g00415 414 PRINTS Actin signature 179 198 IPR004000 -
Cma14g00415 414 PRINTS Actin signature 154 167 IPR004000 -
Cma14g00415 414 PRINTS Actin signature 88 99 IPR004000 -
Cma14g00415 414 PRINTS Actin signature 275 291 IPR004000 -
Cma14g00415 414 PRINTS Actin signature 65 74 IPR004000 -
Cma14g00415 414 ProSitePatterns Actins signature 2. 395 403 IPR004001 -
Cma14g00415 414 PANTHER ACTIN-97 38 413 - -
Cma14g00415 414 Gene3D Actin; Chain A, domain 4 219 310 - -
Cma14g00415 414 SMART actin_3 44 414 IPR004000 -
Cma14g00415 414 Gene3D - 47 408 - -
Cma14g00415 414 SUPERFAMILY Actin-like ATPase domain 186 414 IPR043129 -
Cma14g00415 414 PANTHER ACTIN 38 413 IPR004000 -
Cma14g00415 414 SUPERFAMILY Actin-like ATPase domain 43 191 IPR043129 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00806 Cma-Chr2:4772408 Cma14g00415 Cma-Chr14:1949873 0 dispersed
Cma07g00992 Cma-Chr7:5110022 Cma14g00415 Cma-Chr14:1949873 0 dispersed
Cma14g00415 Cma-Chr14:1949873 Cma15g00386 Cma-Chr15:1755346 0 dispersed
Cma14g00415 Cma-Chr14:1949873 Cma06g00102 Cma-Chr6:551928 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00415 K10355 - aof:109833817 744.191