Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00416 ATGTTTTCGTGGCTGGCAAGGATGGCATCGGCTTGTTGGAAACCAGTGAGACGGTATGCCCGTATGAACAAGGATGATGATGAAGATTGTTCTTTAGAGGACTCTTTGTTGTGGAGCAGAGACCTCGAAAATCACTCTTATGGGGATTTTTCTTTCGCTGTGGTTCAGGCGAATGAGGTAATTGAGGATTTTAGTCAGGTTGAGATTGGCCGTGATGCCACTTTCGTCGGCGTTTATGATGGCCATGGCGGCCCTGATGCTTCTCGCTTTATCTGTGATCATCTTTTCAAGAACCTAATGAAACTTGCTCAAGAAAGTGGAGACATAACCGGAGATGTTCTTCAAAGGGCATTTATAGCAACTGAGGAAGGGTTTCTTACTCTTGTTCGTCGATCATGGGGAATAAAACCGACGATTGCAGCAATGGGATCTTGTTGCCTGGTGGGAGTTATCTGGAGAGGTACATTATACGTCGGTAACGTCGGTGATTCCCGGGCTGTTATTGGCTGTTTAGGTAAATCTAATAAGATAGTTGCAGAACAGTTGACAAAGGATCACAATGCAAGTATTGAGGAGGTTCGACAAGAGCTCAAGTCGTTGCATCCTGATGACTCGCATATAGTTGTTATGAAACACGGAGTTTGGCGTATAAAAGGCATAATTCAGGTTTCGAGATCGATAGGCGATGCATATTTGAAAAAGCCAGAGTTCTCTCTCGATCCATCCTTTCCACGATTCCACCTTGCAGAGCCTCTCCGACGGCCTGTTCTTACTGCGGAACCATCGTTAAGTACAAGAGTTCTACAACCAAATGACAAATTTCTCATTTTTGCATCTGATGGCCTTTGGGAGCATTTGTCGAATCAACGAGCGGTCGATATTGTGTATAATAACCCAAGAGCAGGAATTGCTAAAAGACTAGTTAAAACAGCCTTAACTGAGGCTGCGAGGAAGAGGGAGATGAGATACGATGATCTCAAGAAGCTCGAAAAGGGCACACGACGATTCTTTCACGATGATATCACAGTTGTTGTCATCTTTCTGGACCATGAGTTTGAAGGGAAGAAGGCACATATACCAGATCTATCTGTTCGTGGGTTCACCGATACCGTTGGACCATCAAAATTCTCTGTTCTTTGA 1140 44.39 MFSWLARMASACWKPVRRYARMNKDDDEDCSLEDSLLWSRDLENHSYGDFSFAVVQANEVIEDFSQVEIGRDATFVGVYDGHGGPDASRFICDHLFKNLMKLAQESGDITGDVLQRAFIATEEGFLTLVRRSWGIKPTIAAMGSCCLVGVIWRGTLYVGNVGDSRAVIGCLGKSNKIVAEQLTKDHNASIEEVRQELKSLHPDDSHIVVMKHGVWRIKGIIQVSRSIGDAYLKKPEFSLDPSFPRFHLAEPLRRPVLTAEPSLSTRVLQPNDKFLIFASDGLWEHLSNQRAVDIVYNNPRAGIAKRLVKTALTEAARKREMRYDDLKKLEKGTRRFFHDDITVVVIFLDHEFEGKKAHIPDLSVRGFTDTVGPSKFSVL 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1953999 1956612 - CmaCh14G004160.1 Cma14g00416 307399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00416 379 Gene3D - 29 358 IPR036457 -
Cma14g00416 379 ProSiteProfiles PPM-type phosphatase domain profile. 49 348 IPR001932 -
Cma14g00416 379 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 6 368 - -
Cma14g00416 379 SUPERFAMILY PP2C-like 53 349 IPR036457 -
Cma14g00416 379 Pfam Protein phosphatase 2C 72 316 IPR001932 -
Cma14g00416 379 CDD PP2Cc 47 348 IPR001932 -
Cma14g00416 379 SMART PP2C_4 43 346 IPR001932 -
Cma14g00416 379 PANTHER ALPHABET, ISOFORM E-RELATED 6 368 - -
Cma14g00416 379 ProSitePatterns PPM-type phosphatase domain signature. 75 83 IPR000222 GO:0043169
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00101 Cma14g00416 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01709 Cma-Chr11:11316431 Cma14g00416 Cma-Chr14:1953999 1.50E-142 dispersed
Cma14g00416 Cma-Chr14:1953999 Cma06g00132 Cma-Chr6:683929 7.79E-148 dispersed
Cma14g00416 Cma-Chr14:1953999 Cma06g00101 Cma-Chr6:548599 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00416 K01102 - csv:101222146 697.197