Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00431 ATGTTCCATGGAAACAGAGAATCATCAAACTGGACCGTGGTTTTTGGAGAAATGCTCCAACAGCGTCTGTTTGGGTATTTTAATGTCGTTTTCTATTTGACGATTCTGACATCGCTGGCTAGGGCCTTCACTAATCCGTCGGATGTTGCAGCTCTTCAGGATCTGTACAGTGCCATGAACTATCCACTCGAGCTTAAAGGATGGAGAAAAGAAGGTGGAGATCCTTGTGAGGAATCATGGACTGGAGTGTCTTGCTCCGGTTTCTCTGTAATGTACCTTAAGCTCCATGGACTAAATCTCACTGGGAATCTTGGAGGACAGCTTAACAATCTCATAAATTTGAAGCAAATGGATGTTAGCTCTAATAGACTTACGGGTGAAATTCCGCACAACTTGCCTCCTAATGCGACTCATATAAATATGGCATTCAACCGTTTAAGCAAAAATCTTCCACATACTTTATCTTACATGGGAAATCTCCGACATATAAATCTGAGCCATAATACTCTATCTGGTGTGCTTGGAAATGTGTTTGCTGGTTTACAGAATTTGAGAGAGATGGATTTATCATATAATGACTTTGCTGGAGATTTGCCAAATTCCTTCAGTTCTCTGACGAACATCACTAGACTGTTCTTGCAGCATAACCAATTCACTGGATCAGTTGCCTACTTGTCCCACCTTCCATTAATTGACTTGAACATCCAAGACAATTATTTTAATGGCATTATTCCAGACAATTTTAGAAACATTCCAAATTTGTGGATTGGGAGCAATAGGCTTCGTCCACAAGTTAATTCTCCACCCTGGGATTTTCCCCTGGGAAAAGATCCTATAATGCAGAACATCAGTGGTCCTCCAACAACCAAGTCAAACGCCATCCAGAATTATCCCTCTCGTGGTGCCGTGAGGCATGAGAAGAGAAGGCATGGTTCTGGTGGAATAGGTCTCCTGGTAGGAGGAGTGACACTAGTAGTAACCTTCGCAGCTCTCTTTGTCGTATTTTCCATGAAGAAAGTTCATGAAAAGAAAATAAATTTGAAGATTAGCAATACGTTACCTCGTTCTCTTTCTCTGGGCAAAGCTGAAGATGGTTCGTCAACTGCACCTGAAGAAGGCTCACAAAGCTTGCCCCTGAGTTCTCAATTCATGGGCTGTCCAAGGCCTATACCTATATTAAATCACACGAGAACAGAGAAATTTTCAGGAAGAAAAGGTTTCTCAAACAGATGTAGGCTCCCAGTGAGAACAAAAATTTACACCCTGGCAGAGGTTCAATCCACTACAAACAACTTTAGTCAAGAGAATCTTCTGGGAGAGGGATCTCTTGGTGCTGTTTATAGAGCTGAATTTCCTGATGGCCAAGTTTTGGCAGTAAAAAATCTCAACATGGGAGCTCTCTCCTTTACAGAAGAAGAGCAATTTCTGGATGTGGTATGGACTGCTTCCCGTTTGGGGCACCCGAACATTGTTACGCTGCTTGGATATTGTGTAGAGCATGGACAACATATTCTCGGATATGAATACGTTCGAAATCTGTCTCTTGATGACGCTTTACACTGTGAAGCATACATGCCTCTGTCATGGACTGTCCGTCTCCAGATTGCTCTTGGAATTGCTAGGGCTTTAGATTATTTGCATACAAGTTTTTTCCCTCCATTTGCTCACTGCAGTCTGAAGGCTGCCAACATCTTACTTGATGAAGAACTGATGCCTCGTATTTGTGATTGTGGGCTGTCTGTTTTGAGGCCATTTGTGACCAATGGAGTTAAAACGAAGGCTTCAGAGATTGTCAGCGGTGACATAGGCTACCTTGCACCTGAACATGGGCAGCCAGGATTTGATAATACTAGAAGTGACGTGTATACCTTTGGGGTGTTGCTTTTGGAGCTTGTCACAGGAAGAAAACCATTTGACAATTCGAAACCGAGGGAAGAGCAATCGCTGGTGAAATGGGCTTCATCTCGGCTTCATGACAACGAGAGTTTAGAACAGATGGTTGATCCAAGCATTAAAGGAACATTTTCCTCCAAGTCCCTCTCACGCTTTGTCGATATCATCTCCCTTTGTATACAGCCTGCGAAGGAATTCCGACCACCAATGTCCGAAATAGTGGAACATTTAACGAACCTTCAAAGGAAGATGGAGAAAGCCGAACGTGCTGCTATAGAAGGAACTGAAGTGGATCTTTTTGAAAAATCATTTCGTTCTACCAACACTGGCTACGTAATCTCAGTTTACACTCCGCGCTGCTCTGCTCTGCTTTCTTTGGACCTTTTGACGTTCTTTACTGTTCGAAAATCTACGAGAAGCAGTTCGACTGACCCGAAATTTCTACATTCCTCGTTACATTTCCGCTCTGCTCTGCTGATTCGTTTTGCGGATTGCGATTGA 2394 43.02 MFHGNRESSNWTVVFGEMLQQRLFGYFNVVFYLTILTSLARAFTNPSDVAALQDLYSAMNYPLELKGWRKEGGDPCEESWTGVSCSGFSVMYLKLHGLNLTGNLGGQLNNLINLKQMDVSSNRLTGEIPHNLPPNATHINMAFNRLSKNLPHTLSYMGNLRHINLSHNTLSGVLGNVFAGLQNLREMDLSYNDFAGDLPNSFSSLTNITRLFLQHNQFTGSVAYLSHLPLIDLNIQDNYFNGIIPDNFRNIPNLWIGSNRLRPQVNSPPWDFPLGKDPIMQNISGPPTTKSNAIQNYPSRGAVRHEKRRHGSGGIGLLVGGVTLVVTFAALFVVFSMKKVHEKKINLKISNTLPRSLSLGKAEDGSSTAPEEGSQSLPLSSQFMGCPRPIPILNHTRTEKFSGRKGFSNRCRLPVRTKIYTLAEVQSTTNNFSQENLLGEGSLGAVYRAEFPDGQVLAVKNLNMGALSFTEEEQFLDVVWTASRLGHPNIVTLLGYCVEHGQHILGYEYVRNLSLDDALHCEAYMPLSWTVRLQIALGIARALDYLHTSFFPPFAHCSLKAANILLDEELMPRICDCGLSVLRPFVTNGVKTKASEIVSGDIGYLAPEHGQPGFDNTRSDVYTFGVLLLELVTGRKPFDNSKPREEQSLVKWASSRLHDNESLEQMVDPSIKGTFSSKSLSRFVDIISLCIQPAKEFRPPMSEIVEHLTNLQRKMEKAERAAIEGTEVDLFEKSFRSTNTGYVISVYTPRCSALLSLDLLTFFTVRKSTRSSSTDPKFLHSSLHFRSALLIRFADCD 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2014953 2021500 + CmaCh14G004310.1 Cma14g00431 307414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00431 797 SUPERFAMILY L domain-like 44 255 - -
Cma14g00431 797 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 2 ISOFORM X1 25 720 - -
Cma14g00431 797 SUPERFAMILY Protein kinase-like (PK-like) 408 709 IPR011009 -
Cma14g00431 797 SMART LRR_typ_2 157 180 IPR003591 -
Cma14g00431 797 SMART LRR_typ_2 111 135 IPR003591 -
Cma14g00431 797 SMART LRR_typ_2 181 204 IPR003591 -
Cma14g00431 797 SMART LRR_typ_2 205 228 IPR003591 -
Cma14g00431 797 MobiDBLite consensus disorder prediction 358 381 - -
Cma14g00431 797 Gene3D Ribonuclease Inhibitor 44 276 IPR032675 -
Cma14g00431 797 Pfam Leucine rich repeat N-terminal domain 46 86 IPR013210 -
Cma14g00431 797 Pfam Leucine rich repeat 135 194 IPR001611 GO:0005515
Cma14g00431 797 Gene3D Phosphorylase Kinase; domain 1 397 509 - -
Cma14g00431 797 ProSiteProfiles Protein kinase domain profile. 432 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma14g00431 797 Gene3D Transferase(Phosphotransferase) domain 1 510 734 - -
Cma14g00431 797 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 25 720 - -
Cma14g00431 797 Coils Coil 701 728 - -
Cma14g00431 797 Pfam Protein kinase domain 433 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00431 - - - cpep:111791529 1391.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00431 Cma-Chr14:2014953 Cma18g00568 Cma-Chr18:3822270 1.76E-174 dispersed
Cma14g00431 Cma-Chr14:2014953 Cma14g00432 Cma-Chr14:2021563 0 tandem
Cma14g00431 Cma-Chr14:2014953 Cma06g00088 Cma-Chr6:488977 5.17E-39 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma19g00972 CST 34 762 Strubbelig Receptor Gene Family AT4G03390 61.2 6.8e-205 711.4
Cma11g01861 CST 103 821 Strubbelig Receptor Gene Family AT4G03390 60.3 5.8e-188 655.2
Cma03g00479 . 29 771 Strubbelig Receptor Gene Family AT4G03390 52.3 1.3e-155 547.7
Cma17g00644 CCT,CST 384 687 Strubbelig Receptor Gene Family AT4G03390 56.5 6.6e-91 332.8
Cma08g00837 CCT,CST 425 719 Strubbelig Receptor Gene Family AT4G03390 57.8 1.2e-89 328.6
Cma14g00431 . 34 743 Strubbelig Receptor Gene Family AT5G06820 53.0 1.0e-178 624.4
Cma04g00965 . 10 695 Strubbelig Receptor Gene Family AT1G78980 59.0 2.4e-185 646.4
Cma15g01427 . 10 653 Strubbelig Receptor Gene Family AT1G78980 50.4 2.5e-166 583.2
Cma14g01226 . 23 718 Strubbelig Receptor Gene Family AT1G78980 51.6 1.6e-152 537.3
Cma01g00022 CCT 574 1255 Strubbelig Receptor Gene Family AT1G78980 52.0 3.4e-147 519.6
Cma08g00837 CCT,CST 43 741 Strubbelig Receptor Gene Family AT1G78980 50.4 2.1e-128 457.2
Cma04g00965 . 5 673 Strubbelig Receptor Gene Family AT3G13065 52.8 8.1e-141 498.4
Cma08g00837 CCT,CST 37 717 Strubbelig Receptor Gene Family AT3G13065 50.6 4.6e-104 376.3
Cma17g00644 CCT,CST 7 685 Strubbelig Receptor Gene Family AT3G13065 50.3 9.0e-100 362.1
Cma18g00568 . 383 676 Strubbelig Receptor Gene Family AT1G11130 54.1 7.4e-86 315.8
Cma13g00416 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.1 4.8e-85 313.2
Cma17g00644 CCT,CST 375 685 Strubbelig Receptor Gene Family AT1G11130 50.8 2.0e-83 307.8
Cma08g00837 CCT,CST 429 717 Strubbelig Receptor Gene Family AT1G11130 52.9 4.5e-83 306.6
Cma14g00431 . 34 743 Strubbelig Receptor Gene Family AT5G06820 53.0 1.0e-178 624.4
Cma19g00972 CST 34 762 Strubbelig Receptor Gene Family AT4G03390 61.2 6.8e-205 711.4
Cma11g01861 CST 103 821 Strubbelig Receptor Gene Family AT4G03390 60.3 5.8e-188 655.2
Cma03g00479 . 29 771 Strubbelig Receptor Gene Family AT4G03390 52.3 1.3e-155 547.7
Cma17g00644 CCT,CST 384 687 Strubbelig Receptor Gene Family AT4G03390 56.5 6.6e-91 332.8
Cma08g00837 CCT,CST 425 719 Strubbelig Receptor Gene Family AT4G03390 57.8 1.2e-89 328.6
Cma04g00965 . 5 673 Strubbelig Receptor Gene Family AT3G13065 52.8 8.1e-141 498.4
Cma08g00837 CCT,CST 37 717 Strubbelig Receptor Gene Family AT3G13065 50.6 4.6e-104 376.3
Cma17g00644 CCT,CST 7 685 Strubbelig Receptor Gene Family AT3G13065 50.3 9.0e-100 362.1
Cma04g00965 . 10 695 Strubbelig Receptor Gene Family AT1G78980 59.0 2.4e-185 646.4
Cma15g01427 . 10 653 Strubbelig Receptor Gene Family AT1G78980 50.4 2.5e-166 583.2
Cma14g01226 . 23 718 Strubbelig Receptor Gene Family AT1G78980 51.6 1.6e-152 537.3
Cma01g00022 CCT 574 1255 Strubbelig Receptor Gene Family AT1G78980 52.0 3.4e-147 519.6
Cma08g00837 CCT,CST 43 741 Strubbelig Receptor Gene Family AT1G78980 50.4 2.1e-128 457.2
Cma14g01226 . 1 718 Strubbelig Receptor Gene Family AT1G53730 60.1 1.2e-211 733.8
Cma01g00022 CCT 526 1249 Strubbelig Receptor Gene Family AT1G53730 60.6 5.0e-210 728.4
Cma08g00837 CCT,CST 31 730 Strubbelig Receptor Gene Family AT1G53730 59.1 1.6e-179 627.1
Cma17g00644 CCT,CST 1 698 Strubbelig Receptor Gene Family AT1G53730 59.7 1.5e-177 620.5
Cma13g00416 . 4 689 Strubbelig Receptor Gene Family AT1G53730 51.6 6.9e-135 478.8
Cma11g01861 CST 518 810 Strubbelig Receptor Gene Family AT1G53730 56.3 2.9e-88 323.9
Cma14g01226 . 11 713 Strubbelig Receptor Gene Family AT3G14350 51.8 1.8e-180 630.2
Cma01g00022 CCT 536 1253 Strubbelig Receptor Gene Family AT3G14350 50.6 7.5e-179 624.8
Cma08g00837 CCT,CST 39 728 Strubbelig Receptor Gene Family AT3G14350 53.5 7.0e-161 565.1
Cma17g00644 CCT,CST 6 702 Strubbelig Receptor Gene Family AT3G14350 53.0 1.4e-156 550.8
Cma11g01861 CST 517 818 Strubbelig Receptor Gene Family AT3G14350 51.6 1.8e-76 284.6
Cma18g00568 . 332 706 Strubbelig Receptor Gene Family AT4G22130 81.6 2.2e-173 606.3
Cma13g00416 . 344 711 Strubbelig Receptor Gene Family AT4G22130 80.2 4.4e-169 592.0
Cma14g01226 . 402 725 Strubbelig Receptor Gene Family AT4G22130 63.2 2.1e-118 423.7
Cma01g00022 CCT 943 1265 Strubbelig Receptor Gene Family AT4G22130 63.4 4.6e-118 422.5
Cma17g00644 CCT,CST 391 707 Strubbelig Receptor Gene Family AT4G22130 64.9 6.0e-118 422.2
Cma08g00837 CCT,CST 423 732 Strubbelig Receptor Gene Family AT4G22130 66.0 3.9e-117 419.5
Cma11g01861 CST 486 821 Strubbelig Receptor Gene Family AT4G22130 55.6 4.8e-107 386.0
Cma19g00972 CST 459 754 Strubbelig Receptor Gene Family AT4G22130 60.9 1.5e-105 380.9
Cma04g00965 . 378 695 Strubbelig Receptor Gene Family AT4G22130 55.4 4.3e-100 362.8
Cma03g00479 . 485 771 Strubbelig Receptor Gene Family AT4G22130 60.5 1.4e-98 357.8
Cma14g00431 . 404 726 Strubbelig Receptor Gene Family AT4G22130 52.0 2.5e-92 337.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003013 1 3 1 1 1 1 2 1 1 2 1 0 3 2 1 2 1 1 3 1 2 2 2 1 2 2 2 1 0 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69060 PF00069 Pkinase 2.30E-33 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g00431 Cma_Chr14 FPKM 0.032999 0.029156 0.491249 0.389836 0.342888 0.357704 0.228863 0.130064 0.150789 0.163823