Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00440 ATGGATGACCCTTCCACTAACTTCTTCAAAAATCTCTTCAAATTCAACCCTTCTCCACCAAACCCTCATCCTCCTCCTCCTCCTCCACCTTACTTCCTCCCCACTCACCTCCACGCGCCGCCGTCCTCTCCTCCTCTCCGTCAAGCTCTCCCTCTCCTCCGCCTCAGCCCCACCAGATCATCCCAAAACAACAACGCCCCACAAAATTTTTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCGGCCGCCAACGTTTCGGTGACTGTTGCACTCCACATAGGGTTACCAAGCCCTAGCGCCTCAGAAATGGCAACCCTTTTGCTGTCTAGTAATCAAAATCAAGAGGAAGAAGACGAGGACGAAGACGACGATGAACACGAATTAGAAGAAGAAGAAGAAGAAGAAGAAGTAGCAGCCATTAGTGGACTATGTTTAAGCAATAGCCGACTCAACAAAGGACAATATTGGATCCCAACTCCTTCACAAATCCTCATTGGTCCTACTCAATTCTCTTGTCCTGTTTGTTTCAAAACCTTCAATAGATATAACAACATGCAGATGCACATGTGGGGGCATGGCTCGCAATACAGGCGAGGGCCAGAATCATTAAGAGGCACACAACCAACAGGGATGCTTAGGCTGCCATGCTATTGCTGCTCGCCAGGGTGCCGCAACAACATCGACCATCCACGAGCCAAGCCCTTGAAGGACTTCAGAACCCTTCAAACTCACTACAAACGCAAGCATGGGATCAAGCCGTTCATGTGTAGGAAGTGTGGGAAAGCCTTTGCTGTTAGAGGGGATTGGAGGACTCATGAGAAGAATTGTGGGAAGCTTTGGTATTGCATTTGTGGCTCTGATTTTAAGCACAAGAGATCCCTTAAAGACCATATCAAGGCCTTTGGCAATGGCCATGCTGCTTACAACAATTCTAATGCTAATAACAATCCCGATCATCGTCATCGCCATCATCACTGTCATCATCATCGTCATCATGGGATCGATGAAGACGAGGACCCGGCTTATTCAGAAGTCGAACAAGATCATGATTGA 1053 48.72 MDDPSTNFFKNLFKFNPSPPNPHPPPPPPPYFLPTHLHAPPSSPPLRQALPLLRLSPTRSSQNNNAPQNFSSSSSSSSAAAAANVSVTVALHIGLPSPSASEMATLLLSSNQNQEEEDEDEDDDEHELEEEEEEEEVAAISGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNNSNANNNPDHRHRHHHCHHHRHHGIDEDEDPAYSEVEQDHD 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2082202 2084484 - CmaCh14G004400.1 Cma14g00440 307423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00440 350 PANTHER ZINC FINGER PROTEIN WIP2 1 328 IPR043584 GO:0003700|GO:0010468
Cma14g00440 350 Gene3D Classic Zinc Finger 231 308 - -
Cma14g00440 350 PANTHER ZINC FINGER PROTEIN WIP2 1 328 - -
Cma14g00440 350 SUPERFAMILY beta-beta-alpha zinc fingers 236 274 IPR036236 -
Cma14g00440 350 Coils Coil 111 134 - -
Cma14g00440 350 MobiDBLite consensus disorder prediction 54 76 - -
Cma14g00440 350 MobiDBLite consensus disorder prediction 109 133 - -
Cma14g00440 350 SMART c2h2final6 254 274 IPR013087 -
Cma14g00440 350 SMART c2h2final6 170 192 IPR013087 -
Cma14g00440 350 MobiDBLite consensus disorder prediction 331 350 - -
Cma14g00440 350 MobiDBLite consensus disorder prediction 308 350 - -
Cma14g00440 350 MobiDBLite consensus disorder prediction 113 133 - -
Cma14g00440 350 ProSiteProfiles Zinc finger C2H2 type domain profile. 254 274 IPR013087 -
Cma14g00440 350 MobiDBLite consensus disorder prediction 17 47 - -
Cma14g00440 350 Gene3D Classic Zinc Finger 169 192 - -
Cma14g00440 350 ProSiteProfiles Zinc finger C2H2 type domain profile. 170 197 IPR013087 -
Cma14g00440 350 MobiDBLite consensus disorder prediction 1 76 - -
Cma14g00440 350 ProSitePatterns Zinc finger C2H2 type domain signature. 172 192 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00080 Cma14g00440 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g01295 Cma-Chr7:7333650 Cma14g00440 Cma-Chr14:2082202 4.83E-130 dispersed
Cma08g00533 Cma-Chr8:3088730 Cma14g00440 Cma-Chr14:2082202 1.57E-102 dispersed
Cma14g00440 Cma-Chr14:2082202 Cma20g00075 Cma-Chr20:330635 1.06E-126 dispersed
Cma14g00440 Cma-Chr14:2082202 Cma17g00951 Cma-Chr17:7075795 1.57E-105 wgd
Cma14g00440 Cma-Chr14:2082202 Cma06g00080 Cma-Chr6:448777 2.60E-173 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36201 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00440 - - csv:101208110 440.269