Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00450 ATGAATAACTTGACTGTTGAAACGGAAGATGCCTTTTCGAGCTTGCTCGAGCTTGCTGCTAATGATGATGTTGATGCCTTCAAGAGATCGATTGAGCGTGATCTTTCTGGCATTGATGAGATTGGTTTCTGGTATGGTCGATTACGAGGCTCGAAGCAGATGACTAATGAGCAGAGAACTCCTTTAATGGTTGCTGCTACTTATGGTAGCATTGAGGTTCTGAAGCTTATTCTTTCTCTTTCTTGTGCTGATGTGAACCGCGCTGTAGGTCTTGATAGAAGCACTGCCCTTCACTGTGCAGCCTCTGGTGGGGCTGCGGATGCTGTAGATATAGTGAAGCTGCTCTTAGCTGCTGGTGCTGATCCTAATATGGTTGATGGGAATGGACATCGACCGGTTGATGTGGTTGTTGCCCCGCTAAGGCACGCTGAGCTTAAATCAACCCTTACCGAACTTCTTAAGACAAATGGTTTCTCTGGTGATGGAAATCTTGATGTTTTAACAGGTGCTAGAAATTCTCTTTCTCCTCGCCCTTCGTCTCCTCTGAATGCTCCCTCGTTCGCATCGGAGTTAGTTTCATCTCCAACAAAGTCGAAACTAAGTGATTTTTCGATGTATCCTGCATCTGAGAAGAAAGAATACCCTGTCGATCTTTCTCTTCCAGATATCAAGAACAGTATCTACTCAACTGATGAATTCCGAATGTATTCGTTCAAGGTTCGACCTTGCTCACGTGCCTACTCTCATGATTGGACTGAGTGTCCCTTTGTCCACCCTGGAGAAAATGCTAGGAGGAGGGATCCTAGAAAGTTCCATTATAGCTGTGTAACCTGTCCTGATTTTCGGAAGGGTGCTTGCAGACGGGGAGATATGTGCGAATATGCTCATGGGGTGTTTGAGTGTTGGCTGCACCCAGCACAATATCGAACCCGCCTTTGCAAAGATGGCACAAATTGCTCAAGGAGAGTTTGCTTCTTTGCACACACCACTGAGGAACTGCGACCTCTGTATGTTTCGACTGGCTCTGCTGTTCCCTCACCACGTTCTTGTACTTCTGGGGCTTCTGCTATGGATTATACTACAGTCATGAACCTTCTACCTGGTTCTCCATCTTCGGTCCCTGTGATGTCTCCATCACCATTCACTCCTCCGATGTCTCCATCTGCCAATGGCATGTCTCATCCGTCCATGGCTTGGCCCCAACCAAATGTACCTGCCTTGCTTCTTCCAGGAAGCAATATTCAATCCAGCCGCCTAAGATCTTCCTTGAGTGCAAGAGATATTCCTGTCGAGGACTTCGATTATCTGAGTGATTTCGAACTGCAGCAGCAGCAGCAGCTCGTAAATGACTTGAATTGTCTTTCTCAACCACCATTAAGTTCAAATTCATTGAGCCGTTCTGGTCGACTGAAAACTATGACCCCTTCAAATCTTGACGATCTCTTCTCTGCTGAGAGTTCATCTCCCAGATACTCTGATCAAGCTCTGGCTTCAGCTGTTTTCTCCCCTACACACAAATCAGCAGTTATCAATCAATTTCAGCAGCAACAGAATATGTTGTCACCAATCAATACAAATTTCTCTCCTAAAAATGTTGATCATCCTCTATTGCAAGCCTCTTTTGGGGTTCCATCATCTGGGAGGATGTCTCCACGAAATCTGGAACCCCCCATCTCTCCAGTGGGCTCACGCTTGTCCATGTTAGCTCAAAGAGAGAAACAGCAACAGTTTCGCAGCCTCAGCTCCCGTGAACTCGGTGCCAATTCTGCTTCTATTGTTGGTTCCCCTGCAAGCTCTTGGTCTAAATGGGGACCTTCTAATGGAAGGCCTGACTGGGCAGTCAATGCGGATGAAATGGGTAAACTTCGACGTTCATCATCATTTGAGCTTGGGAACAACGGCGAAGAGCCAGATTTATCATGGGTTCAATCACTAGTGAAAGAATCTCCAACTGAGATAAAAGAAAAGCAGGCTCATCCAAATTTGGGTGGCGATAGTGTCGTATCTTCTGGTGAGAGTTCTAACGTGAACTCGCAAATGGAGTCAGTCGATCATGCTGCATTAGGAGCATGGCTGGAACAAATGCAGCTCGATCATCTCGTCGCGCTACAGAACTAA 2118 46.41 MNNLTVETEDAFSSLLELAANDDVDAFKRSIERDLSGIDEIGFWYGRLRGSKQMTNEQRTPLMVAATYGSIEVLKLILSLSCADVNRAVGLDRSTALHCAASGGAADAVDIVKLLLAAGADPNMVDGNGHRPVDVVVAPLRHAELKSTLTELLKTNGFSGDGNLDVLTGARNSLSPRPSSPLNAPSFASELVSSPTKSKLSDFSMYPASEKKEYPVDLSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVTCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTTEELRPLYVSTGSAVPSPRSCTSGASAMDYTTVMNLLPGSPSSVPVMSPSPFTPPMSPSANGMSHPSMAWPQPNVPALLLPGSNIQSSRLRSSLSARDIPVEDFDYLSDFELQQQQQLVNDLNCLSQPPLSSNSLSRSGRLKTMTPSNLDDLFSAESSSPRYSDQALASAVFSPTHKSAVINQFQQQQNMLSPINTNFSPKNVDHPLLQASFGVPSSGRMSPRNLEPPISPVGSRLSMLAQREKQQQFRSLSSRELGANSASIVGSPASSWSKWGPSNGRPDWAVNADEMGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKQAHPNLGGDSVVSSGESSNVNSQMESVDHAALGAWLEQMQLDHLVALQN 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2142180 2144297 - CmaCh14G004500.1 Cma14g00450 307433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00450 705 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Cma14g00450 705 Gene3D - 8 156 IPR036770 -
Cma14g00450 705 PANTHER UNKEMPT FAMILY MEMBER 1 702 IPR045234 -
Cma14g00450 705 Gene3D - 272 335 - -
Cma14g00450 705 MobiDBLite consensus disorder prediction 574 606 - -
Cma14g00450 705 MobiDBLite consensus disorder prediction 663 681 - -
Cma14g00450 705 SMART ANK_2a 57 87 IPR002110 GO:0005515
Cma14g00450 705 SMART ANK_2a 92 124 IPR002110 GO:0005515
Cma14g00450 705 PRINTS Ankyrin repeat signature 58 73 IPR002110 GO:0005515
Cma14g00450 705 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515
Cma14g00450 705 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 277 297 IPR000571 GO:0046872
Cma14g00450 705 SUPERFAMILY Ankyrin repeat 5 137 IPR036770 -
Cma14g00450 705 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 1 702 - -
Cma14g00450 705 Pfam Ankyrin repeats (3 copies) 55 126 IPR002110 GO:0005515
Cma14g00450 705 MobiDBLite consensus disorder prediction 574 605 - -
Cma14g00450 705 ProSiteProfiles Zinc finger C3H1-type profile. 277 299 IPR000571 GO:0046872
Cma14g00450 705 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Cma14g00450 705 MobiDBLite consensus disorder prediction 650 681 - -
Cma14g00450 705 SMART c3hfinal6 272 298 IPR000571 GO:0046872
Cma14g00450 705 SMART c3hfinal6 307 330 IPR000571 GO:0046872
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00074 Cma14g00450 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00227 Cma-Chr1:1049928 Cma14g00450 Cma-Chr14:2142180 0 dispersed
Cma02g00741 Cma-Chr2:4498059 Cma14g00450 Cma-Chr14:2142180 2.09E-163 dispersed
Cma04g01112 Cma-Chr4:5737546 Cma14g00450 Cma-Chr14:2142180 1.71E-166 dispersed
Cma10g00690 Cma-Chr10:3123164 Cma14g00450 Cma-Chr14:2142180 3.60E-62 dispersed
Cma14g00450 Cma-Chr14:2142180 Cma14g01003 Cma-Chr14:5270069 0 dispersed
Cma19g00995 Cma-Chr19:8638814 Cma14g00450 Cma-Chr14:2142180 7.39E-59 dispersed
Cma14g00450 Cma-Chr14:2142180 Cma06g00074 Cma-Chr6:416221 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36204 PF12796 Ank_2 6.80E-10 CL0465 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00450 - - csv:101207646 1244.95