Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma14g00454 | ATGGAAAATCACGGCGATGATCCAAATAGCTCCGAGAGGGCGGAGCCGGTGAGGTCACGGTGGACGCCGAAGCCGGAGCAGATTCTGATTCTTGAATCTATTTTCAATAGTGGAATGGTGAATCCACCAAAAGATGAGACTGTCAGAATTAGAAAGCTGCTTGAGAAATTTGGCTCTGTTGGCGACGCCAATGTTTTCTACTGGTTTCAGAATCGCCGCTCCCGGTCTCGCCGCCGCCAGCGTCAGCTTCAGGCTGCCGCCAATCACCAAGCTACCGGCGGCGGCGGCGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCGGTGGTAACGGCGGTCGCTACAATAGTGGTGTTATGAATTTTGCTGGTTCCTCCTCTTACTTCGGAGGTGAGTCGTCGTCGTCCTCCTCCTCTGCTTCTGGTGGCGGTGGCGGCGGCGGTACTAGTGAAAGTGGGTGTTTTTCCATGGTGGGTCATATGGGTTTGTCGGAAATTGATCAGCAGATGGGTGTGGCGCCGTCTTTTTGCCCGCCGGAAACCTTAAACTTGGAGTTTCAATCAGGGTATAATGTTATAATATTCATAAATGGAGTTCCGACAGAAGTGCCAAAAGGGCCAGTGGACATGAAGGCAATGTTTGGGCAAGAGACAGTGTTGGTTCATTCATCAGGACTCCCAGTTCTTACCAATGAATTTGGAATCTCTCTGCACTCTTTGCAGCATGGTGAAAGCTATTTTCTGGGTTGA | 744 | 51.61 | MENHGDDPNSSERAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQLQAAANHQATGGGGGGGGGGGGGGGGNGGRYNSGVMNFAGSSSYFGGESSSSSSSASGGGGGGGTSESGCFSMVGHMGLSEIDQQMGVAPSFCPPETLNLEFQSGYNVIIFINGVPTEVPKGPVDMKAMFGQETVLVHSSGLPVLTNEFGISLHSLQHGESYFLG | 247 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 2171571 | 2172766 | + | CmaCh14G004540.1 | Cma14g00454 | 307437 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma14g00454 | 247 | ProSiteProfiles | 'Homeobox' domain profile. | 14 | 79 | IPR001356 | GO:0003677 | |
| Cma14g00454 | 247 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Cma14g00454 | 247 | MobiDBLite | consensus disorder prediction | 77 | 107 | - | - | |
| Cma14g00454 | 247 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Cma14g00454 | 247 | SMART | HOX_1 | 16 | 83 | IPR001356 | GO:0003677 | |
| Cma14g00454 | 247 | SUPERFAMILY | Homeodomain-like | 10 | 87 | IPR009057 | - | |
| Cma14g00454 | 247 | PANTHER | WUSCHEL-RELATED HOMEOBOX 11 | 9 | 246 | IPR044558 | GO:0003700|GO:0048830 | |
| Cma14g00454 | 247 | Gene3D | - | 18 | 85 | - | - | |
| Cma14g00454 | 247 | PANTHER | WUSCHEL-RELATED HOMEOBOX 11 | 9 | 246 | - | - | |
| Cma14g00454 | 247 | Pfam | Homeodomain | 18 | 78 | IPR001356 | GO:0003677 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma03g01305 | Cma-Chr3:8445997 | Cma14g00454 | Cma-Chr14:2171571 | 1.45E-14 | dispersed | |
| Cma07g00209 | Cma-Chr7:966712 | Cma14g00454 | Cma-Chr14:2171571 | 5.66E-15 | dispersed | |
| Cma14g00454 | Cma-Chr14:2171571 | Cma13g00993 | Cma-Chr13:7684742 | 1.20E-16 | dispersed | |
| Cma14g00454 | Cma-Chr14:2171571 | Cma06g00070 | Cma-Chr6:396091 | 5.33E-106 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 36205 | PF00046 | Homeodomain | 6.20E-13 | CL0123 | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma14g00454 | - | - | csv:101207317 | 323.939 |