Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00454 ATGGAAAATCACGGCGATGATCCAAATAGCTCCGAGAGGGCGGAGCCGGTGAGGTCACGGTGGACGCCGAAGCCGGAGCAGATTCTGATTCTTGAATCTATTTTCAATAGTGGAATGGTGAATCCACCAAAAGATGAGACTGTCAGAATTAGAAAGCTGCTTGAGAAATTTGGCTCTGTTGGCGACGCCAATGTTTTCTACTGGTTTCAGAATCGCCGCTCCCGGTCTCGCCGCCGCCAGCGTCAGCTTCAGGCTGCCGCCAATCACCAAGCTACCGGCGGCGGCGGCGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCGGTGGTAACGGCGGTCGCTACAATAGTGGTGTTATGAATTTTGCTGGTTCCTCCTCTTACTTCGGAGGTGAGTCGTCGTCGTCCTCCTCCTCTGCTTCTGGTGGCGGTGGCGGCGGCGGTACTAGTGAAAGTGGGTGTTTTTCCATGGTGGGTCATATGGGTTTGTCGGAAATTGATCAGCAGATGGGTGTGGCGCCGTCTTTTTGCCCGCCGGAAACCTTAAACTTGGAGTTTCAATCAGGGTATAATGTTATAATATTCATAAATGGAGTTCCGACAGAAGTGCCAAAAGGGCCAGTGGACATGAAGGCAATGTTTGGGCAAGAGACAGTGTTGGTTCATTCATCAGGACTCCCAGTTCTTACCAATGAATTTGGAATCTCTCTGCACTCTTTGCAGCATGGTGAAAGCTATTTTCTGGGTTGA 744 51.61 MENHGDDPNSSERAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQLQAAANHQATGGGGGGGGGGGGGGGGNGGRYNSGVMNFAGSSSYFGGESSSSSSSASGGGGGGGTSESGCFSMVGHMGLSEIDQQMGVAPSFCPPETLNLEFQSGYNVIIFINGVPTEVPKGPVDMKAMFGQETVLVHSSGLPVLTNEFGISLHSLQHGESYFLG 247
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
14 2171571 2172766 + CmaCh14G004540.1 Cma14g00454 307437
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00454 247 ProSiteProfiles 'Homeobox' domain profile. 14 79 IPR001356 GO:0003677
Cma14g00454 247 MobiDBLite consensus disorder prediction 1 20 - -
Cma14g00454 247 MobiDBLite consensus disorder prediction 77 107 - -
Cma14g00454 247 MobiDBLite consensus disorder prediction 1 21 - -
Cma14g00454 247 SMART HOX_1 16 83 IPR001356 GO:0003677
Cma14g00454 247 SUPERFAMILY Homeodomain-like 10 87 IPR009057 -
Cma14g00454 247 PANTHER WUSCHEL-RELATED HOMEOBOX 11 9 246 IPR044558 GO:0003700|GO:0048830
Cma14g00454 247 Gene3D - 18 85 - -
Cma14g00454 247 PANTHER WUSCHEL-RELATED HOMEOBOX 11 9 246 - -
Cma14g00454 247 Pfam Homeodomain 18 78 IPR001356 GO:0003677
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01305 Cma-Chr3:8445997 Cma14g00454 Cma-Chr14:2171571 1.45E-14 dispersed
Cma07g00209 Cma-Chr7:966712 Cma14g00454 Cma-Chr14:2171571 5.66E-15 dispersed
Cma14g00454 Cma-Chr14:2171571 Cma13g00993 Cma-Chr13:7684742 1.20E-16 dispersed
Cma14g00454 Cma-Chr14:2171571 Cma06g00070 Cma-Chr6:396091 5.33E-106 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36205 PF00046 Homeodomain 6.20E-13 CL0123 Cma TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00454 - - csv:101207317 323.939