Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma14g00494 | ATGAGGGAAGAGGATTCAAATTGGTTCTCAAAATGGGAAGAGGAGCTTCCTTCTCCTGATGAATTGATGCCTCTTTCCCAAACCCTTATCACCCCTGATCTTGCTGTGGCATTTGACATCTCAAGCTCAAATGCTGTCATTGATAATAACAGCCATCCGCCGCCGCCTCCTCCGGTTGTCGCTCAGCCGAGTTCTGCTGATTTTGGGGATTGTGGGGACCTGGGGTCCGGCGAGCCTGCGAGAACCCTGAAGCGGCCGCGCCTGGTCTGGACTCCACAGCTCCATAAGCGATTTGTCGATGCCGTCGCCCATTTGGGGATAAAAAATGCTGTCCCGAAAACCATAATGCAGTTGATGAGCGTCGATGGGTTAACTCGTGAAAACGTAGCTAGCCATTTGCAGAAATACCGTCTCTATTTGAAGCGTATGCAGGGGATTTCCAGCGGCAGCGGTGGCAGTGGCGGTGCTAATGGTGCCGCCACTTCAGATCTCGCTACTGATCATTTGTTCGCCAGTTCCCCTGTTCCGCCTCATTTTCTTCACTCTTCTCGGACTAATTCCGACCATTTCTTGCCGTTTGTACCCGTCGGAGCGCTGCAGCAGCACCACCACATGGCTGCCGCCGCCGCCGCCGCTCAGTACCACCGGCAAGTGGCTCAATTTGGGTCGCCGCCAAATGGGCAATTTGAGCGTCCGTTTTTGGCTCGGCCTATTCACCGGCTTGGGGCTCCGGTGAGTAACCCGGCGACGAATCACATCGAAGATTTGGATTCGGAAATCCGGCTAGAGACCTCTGTTTCACCGGCGGTAATGGCGTTTTTCCGATCTCCAAATCCCAGTATTCCAAAACAGTTCGCCGCCGGCAGCCGGTTAAAGACTCTGAAAACCGCCATTGAAATCCTCAAAACAGAGCTCGAGGATTTTCAGCTCTGTTCATCATCATCTTCATCAAATCCTCTATTTGATCGAGTTCGATCTTTTTTCAAGGCAATAATCTTGAAATCAAAGCACCAGATTCCTTGA | 1023 | 51.91 | MREEDSNWFSKWEEELPSPDELMPLSQTLITPDLAVAFDISSSNAVIDNNSHPPPPPPVVAQPSSADFGDCGDLGSGEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISSGSGGSGGANGAATSDLATDHLFASSPVPPHFLHSSRTNSDHFLPFVPVGALQQHHHMAAAAAAAQYHRQVAQFGSPPNGQFERPFLARPIHRLGAPVSNPATNHIEDLDSEIRLETSVSPAVMAFFRSPNPSIPKQFAAGSRLKTLKTAIEILKTELEDFQLCSSSSSSNPLFDRVRSFFKAIILKSKHQIP | 340 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 2422084 | 2423294 | - | CmaCh14G004940.1 | Cma14g00494 | 307477 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma14g00494 | 340 | PANTHER | HOMEODOMAIN-LIKE PROTEIN-RELATED | 1 | 257 | - | - | |
| Cma14g00494 | 340 | PANTHER | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 1 | 257 | IPR044841 | GO:0003700|GO:0006355 | |
| Cma14g00494 | 340 | Gene3D | - | 82 | 144 | - | - | |
| Cma14g00494 | 340 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 86 | 138 | IPR006447 | GO:0003677 | |
| Cma14g00494 | 340 | Pfam | Myb-like DNA-binding domain | 89 | 137 | IPR001005 | - | |
| Cma14g00494 | 340 | SUPERFAMILY | Homeodomain-like | 82 | 142 | IPR009057 | - | |
| Cma14g00494 | 340 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 90 | 141 | IPR017930 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma07g01099 | Cma-Chr7:5948982 | Cma14g00494 | Cma-Chr14:2422084 | 3.39E-116 | dispersed | |
| Cma13g00110 | Cma-Chr13:754302 | Cma14g00494 | Cma-Chr14:2422084 | 1.25E-34 | dispersed | |
| Cma14g00494 | Cma-Chr14:2422084 | Cma06g01548 | Cma-Chr6:9701157 | 4.53E-24 | dispersed | |
| Cma14g00494 | Cma-Chr14:2422084 | Cma03g00158 | Cma-Chr3:2122692 | 1.01E-113 | wgd | |
| Cma14g00494 | Cma-Chr14:2422084 | Cma06g00034 | Cma-Chr6:206551 | 1.78E-120 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 36211 | PF00249 | Myb_DNA-binding | 2.70E-08 | CL0123 | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma14g00494 | - | - | csv:101216059 | 387.497 |