Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00509 ATGAACTTCATGGCTGGGGTAGGGCTGCTGTCCACACCATACACGGTCAAAGAAGGCGGATGGGGAAGCTTGGGAGTGCTGCTTGTTTTCGCCATTATGTGCTATTTCACGGCTATGCTTATGAAATATTGCTTTGAGAAGAGAGGCCAAATCAATATCGTTACGTTTCCAGATTTGGGTCAAGCTGCCTTTGGAACTTTTGGACGTCTTTTTGTATCTTGTTGCTGCATTGAGTTCATAATCTTGGAAGAGGACAATCTTAGCAGTCTATTTCCTAATGCGTGGTTGAATCTGGGCGGCCTTCACTTGGACTCTAACCATCTCTTTGGAATCGTTACTGCTCTTCTTGTTTTGCCCACAGTTTGCCTCAGGGATCTCCGTTGGATCTCATATCTCTCTGTGATAGTGCTAACCATAGCATATTTGGGAACACTTGGAGGAATAGGGTTTCGTGAAGTTGAAGCTGGTGAAGTAGTGAATTGGAAGGGCATTCCATTTTCCATTGGGGCTTATGGATTTTGCTTCTCTGGTCATACTCTTTTCCCAAATCTTTACCATTCCATGGCAGATAAAACCAAGTATACTAAGGCTCTCTTAGTATGTTTTGTATTTTGTGTTCTAATATATGGAGGTGTTGCTGTGATGGGATTCCTCATGTTTGGCCAAACTATATTGTCCCAAATAACTTTGAACATGCCACAACATGCCCTTGCCTCCAATGTTGCAAAGTGGACCACGGCAATAGTAATACCAGCCTCCTGCTTTTTGAAAATCATGGGGAAGGAAGCTTCAAGGCTACAGTGGTTTCTGTTTCTTTTTGTTGAACTGGTGGTGGTGGTGGTGGTGATGATGGTGATTGATGGGGGTGCAGAGGGGAGCTCCATTCCTTCATCTCGGATTTCGGACTTAAGAACACTCGAGCAAACTCTTGGATTTCACATAGAAAATGTAGACCTTACTAGAAATCCTTTGTATAATCAGATAAAGTCAAATAGTTCGACTCTGAACAGCAACATCCAGTTTGGTTCTTTAATTAAGAAAGAATCAAATCCAAATTTGGTTTCTACGTCGGGTGGTCCTCATGAAAACTGGGGAGAGTCTAATATGGCCGATGTCAGCACAAGAACTGATACCTCCACGGATGACACTGATGACAAAAGTCAAAGGCTTGACAAGGATCAAGGAAACTCACTTGTCGCGTACGATTCTAGCAACAAATCGAAAGAAAAAACACCTGATCAAAAGAGCTTACGAAGGCTTGCCCAAAATCGTGAAGCTGCTAGAAAAAGTCGTTTAAGGAAAAAAGCATATGTGCAGCAGCTAGAAAGTAGCAGGCTGAAGCTTACTCAACTTGAGCAAGAACTCCAGCGGGCCCGCCAGCAGGGTATATTTATTTCAAATTCTGGAGACCAAGCTCATTCAATGAGTGGAAATGGGGCCCTAGCGTTTGATGCAGAATATTCACGTTGGTTAGAGGAGCATAACAGGCTAATAAATGAGCTTAGAGCTGCAGTTAATTCACATGCGGGCGACACTGAACTTCGAACTGTCGTTGATAACGTGACTACACAGTTTGACGATATTTTCAGGTTGAAAGGCATTGCAGCCAAAGCTGATGTGTTCCACATCTTGTCAGGAATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGCTTCCGTTCATCAGAGATCCTGAAGCTTCTTATAAACCAATTAGAGCCTTTGACTGAGCAGCAGCTAATGGGCATATGTAACCTGCAACAATTATCACAACAAGCAGAAGATGCTCTCTCGCAAGGAATGGATGCATTGCAGCAATCCTTGGCTGAAACATTGGCCAGTGGCACACCTGCAATGTCGGGATCGTCTGGGAACGTCGCAAATTATATGGGTCAAATGGCCATGGCTATGGGAAAGCTTGGAACTCTTGAAGGCTTCCTACGCCAGGCTGATAATCTTCGTCAACAAACTCTTCAACAAATGCATCGCATATTGACAACCCGTCAATCAGCTCGTGCGCTTCTTGCAATAAATGACTACTTCTCCCGCTTAAGAGCCCTCAGCTCTCTCTGGCTTGCACGGCCTCGAGAGTGA 2103 44.41 MNFMAGVGLLSTPYTVKEGGWGSLGVLLVFAIMCYFTAMLMKYCFEKRGQINIVTFPDLGQAAFGTFGRLFVSCCCIEFIILEEDNLSSLFPNAWLNLGGLHLDSNHLFGIVTALLVLPTVCLRDLRWISYLSVIVLTIAYLGTLGGIGFREVEAGEVVNWKGIPFSIGAYGFCFSGHTLFPNLYHSMADKTKYTKALLVCFVFCVLIYGGVAVMGFLMFGQTILSQITLNMPQHALASNVAKWTTAIVIPASCFLKIMGKEASRLQWFLFLFVELVVVVVVMMVIDGGAEGSSIPSSRISDLRTLEQTLGFHIENVDLTRNPLYNQIKSNSSTLNSNIQFGSLIKKESNPNLVSTSGGPHENWGESNMADVSTRTDTSTDDTDDKSQRLDKDQGNSLVAYDSSNKSKEKTPDQKSLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISNSGDQAHSMSGNGALAFDAEYSRWLEEHNRLINELRAAVNSHAGDTELRTVVDNVTTQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKLLINQLEPLTEQQLMGICNLQQLSQQAEDALSQGMDALQQSLAETLASGTPAMSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2477165 2489692 - CmaCh14G005090.1 Cma14g00509 307492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00509 700 Pfam Seed dormancy control 498 572 IPR025422 GO:0006351|GO:0043565
Cma14g00509 700 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 312 700 - -
Cma14g00509 700 SMART brlzneu 411 474 IPR004827 GO:0003700|GO:0006355
Cma14g00509 700 MobiDBLite consensus disorder prediction 406 427 - -
Cma14g00509 700 PANTHER TRANSCRIPTION FACTOR TGA9 312 700 - -
Cma14g00509 700 Pfam bZIP transcription factor 415 455 IPR004827 GO:0003700|GO:0006355
Cma14g00509 700 Coils Coil 434 461 - -
Cma14g00509 700 CDD bZIP_HBP1b-like 415 466 - -
Cma14g00509 700 MobiDBLite consensus disorder prediction 350 376 - -
Cma14g00509 700 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 418 433 IPR004827 GO:0003700|GO:0006355
Cma14g00509 700 SUPERFAMILY Leucine zipper domain 415 458 IPR046347 GO:0003700|GO:0006355
Cma14g00509 700 MobiDBLite consensus disorder prediction 377 392 - -
Cma14g00509 700 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 413 457 IPR004827 GO:0003700|GO:0006355
Cma14g00509 700 MobiDBLite consensus disorder prediction 350 431 - -
Cma14g00509 700 Gene3D - 414 466 - -
Cma14g00509 700 Pfam Transmembrane amino acid transporter protein 3 243 IPR013057 -
Cma14g00509 700 ProSiteProfiles DOG1 domain profile. 480 697 IPR025422 GO:0006351|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00509 K14431 TGA; transcription factor TGA - csv:101219149 734.176
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00087 Cma14g00509 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00023 Cma-Chr6:143293 Cma14g00509 Cma-Chr14:2477165 2.16E-99 dispersed
Cma06g00025 Cma-Chr6:157073 Cma14g00509 Cma-Chr14:2477165 0 dispersed
Cma06g00028 Cma-Chr6:165976 Cma14g00509 Cma-Chr14:2477165 6.30E-110 dispersed
Cma12g00124 Cma-Chr12:511435 Cma14g00509 Cma-Chr14:2477165 0 dispersed
Cma13g00600 Cma-Chr13:5892568 Cma14g00509 Cma-Chr14:2477165 3.10E-10 dispersed
Cma14g00434 Cma-Chr14:2044200 Cma14g00509 Cma-Chr14:2477165 4.50E-117 dispersed
Cma14g00509 Cma-Chr14:2477165 Cma15g00908 Cma-Chr15:4699844 1.67E-159 dispersed
Cma15g00474 Cma-Chr15:2109147 Cma14g00509 Cma-Chr14:2477165 8.58E-74 dispersed
Cma18g00662 Cma-Chr18:6076920 Cma14g00509 Cma-Chr14:2477165 4.56E-51 dispersed
Cma14g00509 Cma-Chr14:2477165 Cma04g01321 Cma-Chr4:6717277 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1240 . Blo12g00600 . . . . . . Cmo06g00079 Cmo14g00514 . . . . . . Cpe08g01342 . . . . . . . . . . . . . . Cone3ag0081 Cone10ag0067 Cone13ag0546 Cone19ag0496 . . . Cme04g02220 . . Bda03g01602 . . . . Bma04g00464 . . . Cma06g00087 Cma14g00509 Car06g00074 Car14g00399 Cpe03g00385 . . . . . . . . Cla10g01652 Cam10g1699 Cec10g1751 Cco10g1716 Clacu10g1719 Cmu10g2471 Cre10g1850 Lsi03g01716 Csa03g03598 Chy04g01760 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma06g00028 . 108 479 Amino Acid/Auxin Permease AAAP Family AT2G41190 66.6 1.8e-137 486.9
Cma14g00509 CST 1 267 Amino Acid/Auxin Permease AAAP Family AT2G41190 55.8 3.3e-83 306.6
Cma14g01140 . 3 477 Amino Acid/Auxin Permease AAAP Family AT3G30390 65.5 6.1e-169 591.3
Cma09g00312 . 19 446 Amino Acid/Auxin Permease AAAP Family AT3G30390 58.4 3.1e-144 509.2
Cma11g01022 . 38 258 Amino Acid/Auxin Permease AAAP Family AT3G28960 63.3 2.9e-82 303.1
Cma14g01140 . 20 471 Amino Acid/Auxin Permease AAAP Family AT5G38820 64.8 3.2e-162 568.9
Cma09g00312 . 35 446 Amino Acid/Auxin Permease AAAP Family AT5G38820 58.2 1.5e-138 490.3
Cma17g00879 CST 53 538 Amino Acid/Auxin Permease AAAP Family AT1G80510 71.5 2.7e-183 639.0
Cma08g00608 CST 3 468 Amino Acid/Auxin Permease AAAP Family AT1G80510 66.7 1.1e-171 600.5
Cma15g00474 CST 30 549 Amino Acid/Auxin Permease AAAP Family AT5G02180 50.5 7.6e-134 474.9
Cma15g00474 CST 1 483 Amino Acid/Auxin Permease AAAP Family AT2G39130 66.9 1.2e-175 613.6
Cma04g02562 CST 344 765 Amino Acid/Auxin Permease AAAP Family AT2G39130 64.4 6.4e-148 521.5
Cma11g01022 . 95 258 Amino Acid/Auxin Permease AAAP Family AT5G15240 58.8 1.0e-51 201.4
Cma04g01084 CST 10 427 Amino Acid/Auxin Permease AAAP Family AT3G56200 58.9 1.8e-133 473.4
Cma04g00118 CST 6 424 Amino Acid/Auxin Permease AAAP Family AT3G56200 58.8 5.9e-129 458.4
Cma04g01083 . 8 446 Amino Acid/Auxin Permease AAAP Family AT3G56200 54.6 7.4e-124 441.4
Cma15g00474 CST 1 497 Amino Acid/Auxin Permease AAAP Family AT3G54830 61.7 2.9e-165 579.3
Cma04g02562 CST 344 765 Amino Acid/Auxin Permease AAAP Family AT3G54830 61.7 3.8e-141 499.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000424 3 12 2 4 3 3 5 3 3 3 3 2 7 3 3 5 3 4 3 3 3 3 3 3 3 2 3 9 14 2 122
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36213 PF01490 Aa_trans 1.40E-26 CL0062 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g00509 Cma_Chr14 FPKM 14.160123 14.269269 18.532444 18.127338 7.644754 8.434883 8.307714 22.984617 21.448854 21.05176