Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00509 ATGAACTTCATGGCTGGGGTAGGGCTGCTGTCCACACCATACACGGTCAAAGAAGGCGGATGGGGAAGCTTGGGAGTGCTGCTTGTTTTCGCCATTATGTGCTATTTCACGGCTATGCTTATGAAATATTGCTTTGAGAAGAGAGGCCAAATCAATATCGTTACGTTTCCAGATTTGGGTCAAGCTGCCTTTGGAACTTTTGGACGTCTTTTTGTATCTTGTTGCTGCATTGAGTTCATAATCTTGGAAGAGGACAATCTTAGCAGTCTATTTCCTAATGCGTGGTTGAATCTGGGCGGCCTTCACTTGGACTCTAACCATCTCTTTGGAATCGTTACTGCTCTTCTTGTTTTGCCCACAGTTTGCCTCAGGGATCTCCGTTGGATCTCATATCTCTCTGTGATAGTGCTAACCATAGCATATTTGGGAACACTTGGAGGAATAGGGTTTCGTGAAGTTGAAGCTGGTGAAGTAGTGAATTGGAAGGGCATTCCATTTTCCATTGGGGCTTATGGATTTTGCTTCTCTGGTCATACTCTTTTCCCAAATCTTTACCATTCCATGGCAGATAAAACCAAGTATACTAAGGCTCTCTTAGTATGTTTTGTATTTTGTGTTCTAATATATGGAGGTGTTGCTGTGATGGGATTCCTCATGTTTGGCCAAACTATATTGTCCCAAATAACTTTGAACATGCCACAACATGCCCTTGCCTCCAATGTTGCAAAGTGGACCACGGCAATAGTAATACCAGCCTCCTGCTTTTTGAAAATCATGGGGAAGGAAGCTTCAAGGCTACAGTGGTTTCTGTTTCTTTTTGTTGAACTGGTGGTGGTGGTGGTGGTGATGATGGTGATTGATGGGGGTGCAGAGGGGAGCTCCATTCCTTCATCTCGGATTTCGGACTTAAGAACACTCGAGCAAACTCTTGGATTTCACATAGAAAATGTAGACCTTACTAGAAATCCTTTGTATAATCAGATAAAGTCAAATAGTTCGACTCTGAACAGCAACATCCAGTTTGGTTCTTTAATTAAGAAAGAATCAAATCCAAATTTGGTTTCTACGTCGGGTGGTCCTCATGAAAACTGGGGAGAGTCTAATATGGCCGATGTCAGCACAAGAACTGATACCTCCACGGATGACACTGATGACAAAAGTCAAAGGCTTGACAAGGATCAAGGAAACTCACTTGTCGCGTACGATTCTAGCAACAAATCGAAAGAAAAAACACCTGATCAAAAGAGCTTACGAAGGCTTGCCCAAAATCGTGAAGCTGCTAGAAAAAGTCGTTTAAGGAAAAAAGCATATGTGCAGCAGCTAGAAAGTAGCAGGCTGAAGCTTACTCAACTTGAGCAAGAACTCCAGCGGGCCCGCCAGCAGGGTATATTTATTTCAAATTCTGGAGACCAAGCTCATTCAATGAGTGGAAATGGGGCCCTAGCGTTTGATGCAGAATATTCACGTTGGTTAGAGGAGCATAACAGGCTAATAAATGAGCTTAGAGCTGCAGTTAATTCACATGCGGGCGACACTGAACTTCGAACTGTCGTTGATAACGTGACTACACAGTTTGACGATATTTTCAGGTTGAAAGGCATTGCAGCCAAAGCTGATGTGTTCCACATCTTGTCAGGAATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGCTTCCGTTCATCAGAGATCCTGAAGCTTCTTATAAACCAATTAGAGCCTTTGACTGAGCAGCAGCTAATGGGCATATGTAACCTGCAACAATTATCACAACAAGCAGAAGATGCTCTCTCGCAAGGAATGGATGCATTGCAGCAATCCTTGGCTGAAACATTGGCCAGTGGCACACCTGCAATGTCGGGATCGTCTGGGAACGTCGCAAATTATATGGGTCAAATGGCCATGGCTATGGGAAAGCTTGGAACTCTTGAAGGCTTCCTACGCCAGGCTGATAATCTTCGTCAACAAACTCTTCAACAAATGCATCGCATATTGACAACCCGTCAATCAGCTCGTGCGCTTCTTGCAATAAATGACTACTTCTCCCGCTTAAGAGCCCTCAGCTCTCTCTGGCTTGCACGGCCTCGAGAGTGA 2103 44.41 MNFMAGVGLLSTPYTVKEGGWGSLGVLLVFAIMCYFTAMLMKYCFEKRGQINIVTFPDLGQAAFGTFGRLFVSCCCIEFIILEEDNLSSLFPNAWLNLGGLHLDSNHLFGIVTALLVLPTVCLRDLRWISYLSVIVLTIAYLGTLGGIGFREVEAGEVVNWKGIPFSIGAYGFCFSGHTLFPNLYHSMADKTKYTKALLVCFVFCVLIYGGVAVMGFLMFGQTILSQITLNMPQHALASNVAKWTTAIVIPASCFLKIMGKEASRLQWFLFLFVELVVVVVVMMVIDGGAEGSSIPSSRISDLRTLEQTLGFHIENVDLTRNPLYNQIKSNSSTLNSNIQFGSLIKKESNPNLVSTSGGPHENWGESNMADVSTRTDTSTDDTDDKSQRLDKDQGNSLVAYDSSNKSKEKTPDQKSLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISNSGDQAHSMSGNGALAFDAEYSRWLEEHNRLINELRAAVNSHAGDTELRTVVDNVTTQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKLLINQLEPLTEQQLMGICNLQQLSQQAEDALSQGMDALQQSLAETLASGTPAMSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2477165 2489692 - CmaCh14G005090.1 Cma14g00509 307492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00509 700 Pfam Seed dormancy control 498 572 IPR025422 GO:0006351|GO:0043565
Cma14g00509 700 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 312 700 - -
Cma14g00509 700 SMART brlzneu 411 474 IPR004827 GO:0003700|GO:0006355
Cma14g00509 700 MobiDBLite consensus disorder prediction 406 427 - -
Cma14g00509 700 PANTHER TRANSCRIPTION FACTOR TGA9 312 700 - -
Cma14g00509 700 Pfam bZIP transcription factor 415 455 IPR004827 GO:0003700|GO:0006355
Cma14g00509 700 Coils Coil 434 461 - -
Cma14g00509 700 CDD bZIP_HBP1b-like 415 466 - -
Cma14g00509 700 MobiDBLite consensus disorder prediction 350 376 - -
Cma14g00509 700 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 418 433 IPR004827 GO:0003700|GO:0006355
Cma14g00509 700 SUPERFAMILY Leucine zipper domain 415 458 IPR046347 GO:0003700|GO:0006355
Cma14g00509 700 MobiDBLite consensus disorder prediction 377 392 - -
Cma14g00509 700 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 413 457 IPR004827 GO:0003700|GO:0006355
Cma14g00509 700 MobiDBLite consensus disorder prediction 350 431 - -
Cma14g00509 700 Gene3D - 414 466 - -
Cma14g00509 700 Pfam Transmembrane amino acid transporter protein 3 243 IPR013057 -
Cma14g00509 700 ProSiteProfiles DOG1 domain profile. 480 697 IPR025422 GO:0006351|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00087 Cma14g00509 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00023 Cma-Chr6:143293 Cma14g00509 Cma-Chr14:2477165 2.16E-99 dispersed
Cma06g00025 Cma-Chr6:157073 Cma14g00509 Cma-Chr14:2477165 0 dispersed
Cma06g00028 Cma-Chr6:165976 Cma14g00509 Cma-Chr14:2477165 6.30E-110 dispersed
Cma12g00124 Cma-Chr12:511435 Cma14g00509 Cma-Chr14:2477165 0 dispersed
Cma13g00600 Cma-Chr13:5892568 Cma14g00509 Cma-Chr14:2477165 3.10E-10 dispersed
Cma14g00434 Cma-Chr14:2044200 Cma14g00509 Cma-Chr14:2477165 4.50E-117 dispersed
Cma14g00509 Cma-Chr14:2477165 Cma15g00908 Cma-Chr15:4699844 1.67E-159 dispersed
Cma15g00474 Cma-Chr15:2109147 Cma14g00509 Cma-Chr14:2477165 8.58E-74 dispersed
Cma18g00662 Cma-Chr18:6076920 Cma14g00509 Cma-Chr14:2477165 4.56E-51 dispersed
Cma14g00509 Cma-Chr14:2477165 Cma04g01321 Cma-Chr4:6717277 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36213 PF01490 Aa_trans 1.40E-26 CL0062 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00509 K14431 - csv:101219149 734.176