Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00550 ATGAGTATAGAGAAGTTTCTGAAGGACTTTGAAGTTGAGCCGAAACGTCCTTCTGCGGAAGCTTTGAGGAGATGGAGATCTGCCGTCTCTATCGTCAAAAATCGACGCCGGAGGTTCCGAAATACTGCAGATCTCGACAAACGCTCCGAAGCCGAGAAAAAGAAGCTCAAAATCCAGGAAAAAATTCGAGTTGCTCTTTATGTTCAGAAGGCAGCATTACAATTTATTGATGCCGTAAATCGGGATGAGTACCATGTGTCAGATGAGGCTAGGAATGCTGGCTATAATATTCATCCGGATGAGCTTGCATCCATAGTCCGTAGCCATGATTATAAGGCATTGAAATTCCATGGTGGTGTTGAAGGACTTTCAAGGAAAGTTTCTGTCGCACTAGATGCAGGTGTTAGTGAAAAGGATGTATCCAAGAGACAAGAGATTTATGGTTATAATCGTTACACAGAGAAGCCTTCCAGATCCTTTTTGGTGTTTCTATGGGAAGCATTACATGACGTGACATTAATCATCCTAATATTCTGTGCGCTAATTTCTCTAGGCGTTGGGATTGCCACTGAAGGATGGCCGAAGGGGACCTATGATGGTTTAGGAATTCTACTCAGTATACTATTGGTCGTCTTGGTTACTTCTATTAGTGATTACAGGCAGTCTTTGCAATTCAAGGATCTTGACCGGGAAAAGCAAAAAATTGATGTTGATGTCACTAGGGATGGGCTGAGGAAAAAAGTTTCCATTTATGACCTGGTTGTTGGAGATATTGTTCATCTATCCATTGGAAATCAGGTTCCTGCTGATGGAGTTTTCATATCAGGATACAGTCTGTTAATTGATGAATCCAGTTTATCTGGTGAGAGTGAACCAGTGAACATAGGTGTGGAAAAACCGTTTCTTCTTTCAGGAACCAAAGTGCAAGATGGATCTGGAAAGATGTTGGTAACAACAGTTGGCATGAAAACTGAATGGGGAAAACTAATGGAAACTCTCAGCGAGGGAGGAGAAGATGAGACTCCACTGCAGGTGAAGCTGAATGGTGTAGCAACTCTTATTGGTAAAATTGGGTTGACTTTTGCTGTATTGACATTCCTGGTGATGACAGGAAGGTTTCTCGTTGAAAAAGCTGCTCAACATCAATTTACGAAATGGACTTCAAGTGATGCACTAAAACTCTTAGATTTCTTTGCCATTGCAGTTACAATAATAGTTGTCGCAGTTCCTGAAGGTTTACCACTGGCAGTGACGTTGAGCCTTGCCTTTGCTATGAAGAAACTGATGACCGAAAGAGCACTAGTTAGGCACCTGTCTGCATGTGAAACGATGGGTTCGGCCAGTTGCATTTGCACAGATAAGACAGGGACGTTAACCACAAACCACATGATAGTTAGCCGTGCATGGGTTTGTGAACATTTTATGGAGAATAAAGACCATGGGAGTGTAGACAAATTGAAATCAGAGATCTCTGAAAACGTTTTAGGCATACTTTTGCAGTCCATATTTCAAAATACTAGCTGCGAAGTGACTAAAGATAAAGACGGGCAGAACTCGATCGTTGGTGGAACACCAACGGAATCAGCACTATTAGAGTTTGGCATCCATTTGGGTGGGGATTTTCATTCCCAACGTACAGAATATAATATACTTAAGGTTGAGCCTTTCAATTCTGTTAGGAAGAAGATGTCTGTACTTGTAGCACTTCCTAATGGTGGTGGGGTTAGAGCTTTTGTCAAAGGTGCATCAGAAATTATACTAGGAATGTGTGACAAGTATATTGATTCCAATGGAGAATCTATTGATTTAACAGAGGAGACGGTAAAGAATGCTACAGACGTTATCAATAGTTTTGCCAATGAAGCTTTGAGGACACTTTGCTTGGCCTTCAAAGATTTAGGGGACCCCAGTGACAAATCTATTCCAGTTGATGGATATACATTAATTACAGTTGTTGGAATCAAGGATCCTGTACGCCCAGGGGTCAAGGAAGCTGTTAAAACTTGTTTAAAAGCTGGAATAACTGTGCGTATGGTTACTGGTGACAATATTAATACAGCGAAGGCCATTGCCAAAGAATGTGGTATACTTACACACGGTGGTTTAGCTATAGAAGGACCAGACTTCCGTAATTTATCTCCAGAACAGATGAAACAAGTTATACCAAAACTCCAGGTGATGGCTCGGTCCTTGCCGCTGGACAAATACACATTGGTTAACAATTTGCGGAGTATGTTTGGTGAGGTCGTTGCAGTGACTGGAGATGGGACAAATGATGCTCCAGCTTTGCATGAGTCAGATATTGGACTAGCTATGGGCATTGCCGGGACTGAGGTGGCCAAAGAAAATGCCGATGTTATCATAATGGATGACAATTTTTCAACCATTGTAAATGTTGCACGATGGGGACGTGCGGTGTATATTAACATACAAAAGTTTGTGCAGTTTCAGCTAACAGTTAACATTGTTGCTCTAGTGATCAATTTTGTTTCTGCTTGCCTCTCAGGATCTGCTCCTCTTACGGCTGTTCAGTTGCTTTGGGTGAACTTGATTATGGACACTCTTGGTGCCTTGGCCCTGGCCACAGAGCCTCCAAATGATGCACTCATGCAGAGACCTCCAATTCCCAAGGGGGTTAGCTTTATTACCAAAGCCATGTGGAGGAACATTGTTGGTCAGAGTATCTATCAACTTGCTGTTCTTGCAGTTCTTAATTTTAGGGGAAAGCAACTTCTTGGACTTAGTGGAGCCGATTCCACGAAAGAACTTAATACTTTGATATTTAACTCATTTGTGTTCTGCCAGGTTTTCAACGAAATCAACAGCCGTGAGATAGAAAAGATCAACATATTCCGAGGGATGTTCAGCAGCTGGATATTTTTGGGAGTAATGGCATCCACAGTTGGGTTTCAAATAATCATTGTTGAACTTCTGGGTGCTTTTGCAAGCACTGTACCACTGAGCTGGGAACTGTGGGGACTGAGCGTTTTGATTGGATTTGTAAGCATGCCAGTCTCAGTTGTGTTGAAGTTCATCCCTGTTCGCAAGGAAACAGTCCATCATGATGGCTACGAACCACTCCCTTCTGGCCCAGAGCTGGCTTGA 3105 42.42 MSIEKFLKDFEVEPKRPSAEALRRWRSAVSIVKNRRRRFRNTADLDKRSEAEKKKLKIQEKIRVALYVQKAALQFIDAVNRDEYHVSDEARNAGYNIHPDELASIVRSHDYKALKFHGGVEGLSRKVSVALDAGVSEKDVSKRQEIYGYNRYTEKPSRSFLVFLWEALHDVTLIILIFCALISLGVGIATEGWPKGTYDGLGILLSILLVVLVTSISDYRQSLQFKDLDREKQKIDVDVTRDGLRKKVSIYDLVVGDIVHLSIGNQVPADGVFISGYSLLIDESSLSGESEPVNIGVEKPFLLSGTKVQDGSGKMLVTTVGMKTEWGKLMETLSEGGEDETPLQVKLNGVATLIGKIGLTFAVLTFLVMTGRFLVEKAAQHQFTKWTSSDALKLLDFFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMTERALVRHLSACETMGSASCICTDKTGTLTTNHMIVSRAWVCEHFMENKDHGSVDKLKSEISENVLGILLQSIFQNTSCEVTKDKDGQNSIVGGTPTESALLEFGIHLGGDFHSQRTEYNILKVEPFNSVRKKMSVLVALPNGGGVRAFVKGASEIILGMCDKYIDSNGESIDLTEETVKNATDVINSFANEALRTLCLAFKDLGDPSDKSIPVDGYTLITVVGIKDPVRPGVKEAVKTCLKAGITVRMVTGDNINTAKAIAKECGILTHGGLAIEGPDFRNLSPEQMKQVIPKLQVMARSLPLDKYTLVNNLRSMFGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFSTIVNVARWGRAVYINIQKFVQFQLTVNIVALVINFVSACLSGSAPLTAVQLLWVNLIMDTLGALALATEPPNDALMQRPPIPKGVSFITKAMWRNIVGQSIYQLAVLAVLNFRGKQLLGLSGADSTKELNTLIFNSFVFCQVFNEINSREIEKINIFRGMFSSWIFLGVMASTVGFQIIIVELLGAFASTVPLSWELWGLSVLIGFVSMPVSVVLKFIPVRKETVHHDGYEPLPSGPELA 1034
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2735274 2746272 + CmaCh14G005500.1 Cma14g00550 307533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00550 1034 SMART Cation_ATPase_N_a_2 110 188 IPR004014 -
Cma14g00550 1034 PANTHER CALCIUM-TRANSPORTING ATPASE 8 1020 - -
Cma14g00550 1034 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 1015 IPR023298 -
Cma14g00550 1034 Pfam E1-E2 ATPase 233 429 - -
Cma14g00550 1034 Gene3D - 166 1012 - -
Cma14g00550 1034 Gene3D - 448 798 IPR023214 -
Cma14g00550 1034 Gene3D - 134 334 - -
Cma14g00550 1034 Pfam Cation transporter/ATPase, N-terminus 117 183 IPR004014 -
Cma14g00550 1034 PRINTS H+-transporting ATPase (proton pump) signature 611 629 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma14g00550 1034 PRINTS H+-transporting ATPase (proton pump) signature 753 769 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma14g00550 1034 PRINTS H+-transporting ATPase (proton pump) signature 785 810 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma14g00550 1034 ProSitePatterns E1-E2 ATPases phosphorylation site. 453 459 IPR018303 -
Cma14g00550 1034 Pfam Ca2+-ATPase N terminal autoinhibitory domain 8 50 IPR024750 GO:0005516
Cma14g00550 1034 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 457 662 IPR023299 GO:0000166
Cma14g00550 1034 Pfam Cation transport ATPase (P-type) 507 592 - -
Cma14g00550 1034 PANTHER CATION TRANSPORTING ATPASE 8 1020 - -
Cma14g00550 1034 SUPERFAMILY Calcium ATPase, transduction domain A 237 332 IPR008250 -
Cma14g00550 1034 CDD P-type_ATPase_Ca_PMCA-like 140 886 - -
Cma14g00550 1034 Gene3D - 461 657 IPR023299 GO:0000166
Cma14g00550 1034 SUPERFAMILY HAD-like 450 858 IPR036412 -
Cma14g00550 1034 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 718 841 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma14g00550 1034 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 203 477 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma14g00550 1034 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 549 698 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma14g00550 1034 Pfam Cation transporting ATPase, C-terminus 838 1012 IPR006068 -
Cma14g00550 1034 Gene3D - 17 78 - -
Cma14g00550 1034 PRINTS P-type cation-transporting ATPase superfamily signature 282 296 - -
Cma14g00550 1034 PRINTS P-type cation-transporting ATPase superfamily signature 451 465 - -
Cma14g00550 1034 PRINTS P-type cation-transporting ATPase superfamily signature 650 661 - -
Cma14g00550 1034 PRINTS P-type cation-transporting ATPase superfamily signature 672 682 - -
Cma14g00550 1034 PRINTS P-type cation-transporting ATPase superfamily signature 753 772 - -
Cma14g00550 1034 PRINTS P-type cation-transporting ATPase superfamily signature 777 789 - -
Cma14g00550 1034 SFLD C1.7: P-type atpase like 433 805 - -
Cma14g00550 1034 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 107 1015 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cma14g00550 1034 SFLD p-type atpase 433 805 IPR044492 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01785 Cma-Chr1:11948321 Cma14g00550 Cma-Chr14:2735274 0 dispersed
Cma03g00914 Cma-Chr3:6618043 Cma14g00550 Cma-Chr14:2735274 0 dispersed
Cma09g00290 Cma-Chr9:1192471 Cma14g00550 Cma-Chr14:2735274 0 dispersed
Cma12g00923 Cma-Chr12:7124315 Cma14g00550 Cma-Chr14:2735274 0 dispersed
Cma12g01119 Cma-Chr12:8851127 Cma14g00550 Cma-Chr14:2735274 0 dispersed
Cma14g00550 Cma-Chr14:2735274 Cma15g00783 Cma-Chr15:3900023 0 dispersed
Cma14g00550 Cma-Chr14:2735274 Cma07g00648 Cma-Chr7:2816696 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00550 K01537 - csv:101206199 1802.33